Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0002010

Physical Location & Seq

Genomic Coordinates Reverse (-)

6110793 .. 6111002

Gene Structure 210 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g07970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGGAAGATCGGAGATTCCTGCGTTTTTTCTCCCTTTCCCTCTGCATAGGCCTAGTCCTCCTCTTCACTTGGTCCCACCTCTCTTACGCGCCGCCCGTACGTCTCCGACCTCCGCAACTGCACAACAAACTCCGCCTAGTGCTCCTCCAAAAACCGCATCCAATACAAACCCCCTATCCCAACGCCCCGCCTCAAAGACCACAGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001505 GO:0006807 GO:0006809 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009987 GO:0010033 GO:0017144 GO:0023052 GO:0032870 GO:0033993 GO:0034641 GO:0042133 GO:0042136 GO:0042221 GO:0044237 GO:0044249 GO:0044271 GO:0046209 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0065008 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0072593 GO:0097305 GO:0097306 GO:1901700 GO:1901701 GO:1903409 GO:2001057

KEGG Pathways

Metabolic & Signaling

ko00260 ko00350 ko00360 ko00410 ko00950 ko00960 ko01100 ko01110 map00260 map00350 map00360 map00410 map00950 map00960 map01100 map01110

Pfam Domains

Protein Families

Cu_amine_oxid Cu_amine_oxidN2 Cu_amine_oxidN3

Protein Analysis

70

Amino Acids

8.15

Weight (kDa)

11.31

Isoelectric Point (pI)

70.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12270 AT4G12280 AT4G12290 AT4G12290
fragaria_vesca	FvH4_5g00610 FvH4_5g00610 FvH4_5g00610 FvH4_5g00610 FvH4_5g00610
malus_domestica	MD02G1257400.v1.1 MD06G1075500.v1.1 MD16G1192400.v1.1
prunus_persica	Prupe.5G078700_v2.0.a1 Prupe.5G078900_v2.0.a1
pyrus_communis	pycom09g07970 pycom13g04890 pycom15g15380 pycom15g15390
rosa_chinensis	RchiOBHm_Chr5g0060271 RchiOBHm_Chr7g0201651 RchiOBHm_Chr7g0201661
rosa_laevigata	RLG00000003658
rosa_multiflora	Rmu_sc0001512.1_g000015 Rmu_sc0004811.1_g000006 Rmu_sc0004811.1_g000008 Rmu_sc0004811.1_g000009 Rmu_sc0004811.1_g000010 Rmu_sc0004811.1_g000011
rosa_roxburghii	Rroxscaffold_3G00255130 Rroxscaffold_3G00255140 Rroxscaffold_3G00255150 Rroxscaffold_6G00396720
rosa_rugosa	Rorug07G0065300 Rorug07G0065300
rosa_samantha	Rh7AG192300 Rh7AG192500 Rh7BG194400 Rh7BG194500 Rh7BG194600 Rh7CG203500 Rh7CG203600 Rh7CG203700 Rh7DG197700
rosa_wichuraiana	Rw7G016860 Rw7G016870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	89
AciI	CCGC	5 cut(s)	92, 113, 133, 155, 188
AfaI	GTAC	1 cut(s)	99
AluBI	AGCT	1 cut(s)	205
AluI	AGCT	1 cut(s)	205
Alw21I	GWGCWC	1 cut(s)	144
Alw26I	GTCTC	1 cut(s)	107
AoxI	GGCC	1 cut(s)	49
AspLEI	GCGC	1 cut(s)	91
AspS9I	GGNCC	1 cut(s)	72
AvaII	GGWCC	1 cut(s)	72
Bbv12I	GWGCWC	1 cut(s)	144
BcoDI	GTCTC	1 cut(s)	107
BfaI	CTAG	2 cut(s)	53, 137
BisI	GCNGC	1 cut(s)	92
BlsI	GCNGC	1 cut(s)	93
Bme18I	GGWCC	1 cut(s)	72
BmgT120I	GGNCC	1 cut(s)	72
BmiI	GGNNCC	1 cut(s)	74
BmsI	GCATC	1 cut(s)	166
BseGI	GGATG	1 cut(s)	157
BseRI	GAGGAG	2 cut(s)	50, 134
BsgI	GTGCAG	1 cut(s)	104
Bsh1236I	CGCG	1 cut(s)	89
BshFI	GGCC	1 cut(s)	51
BsiHKAI	GWGCWC	1 cut(s)	144
BsiWI	CGTACG	1 cut(s)	97
BslFI	GGGAC	1 cut(s)	58
BsmAI	GTCTC	1 cut(s)	107
BsmBI	CGTCTC	1 cut(s)	107
BsmFI	GGGAC	1 cut(s)	58
BsnI	GGCC	1 cut(s)	51
Bsp1286I	GDGCHC	1 cut(s)	144
Bsp143I	GATC	1 cut(s)	7
BspACI	CCGC	5 cut(s)	92, 113, 133, 155, 188
BspANI	GGCC	1 cut(s)	51
BspFNI	CGCG	1 cut(s)	89
BspLI	GGNNCC	1 cut(s)	74
BssMI	GATC	1 cut(s)	7
Bst6I	CTCTTC	1 cut(s)	68
BstF5I	GGATG	1 cut(s)	157
BstFNI	CGCG	1 cut(s)	89
BstHHI	GCGC	1 cut(s)	91
BstKTI	GATC	1 cut(s)	10
BstMAI	GTCTC	1 cut(s)	107
BstMBI	GATC	1 cut(s)	7
BstUI	CGCG	1 cut(s)	89
BsuRI	GGCC	1 cut(s)	51
BtsCI	GGATG	1 cut(s)	157
CfoI	GCGC	1 cut(s)	91
Cfr13I	GGNCC	1 cut(s)	72
Csp6I	GTAC	1 cut(s)	98
CviJI	RGCY	2 cut(s)	51, 205
CviKI_1	RGCY	2 cut(s)	51, 205
CviQI	GTAC	1 cut(s)	98
DpnI	GATC	1 cut(s)	9
DpnII	GATC	1 cut(s)	7
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
EciI	GGCGGA	1 cut(s)	122
Eco147I	AGGCCT	1 cut(s)	51
Eco47I	GGWCC	1 cut(s)	72
Esp3I	CGTCTC	1 cut(s)	107
FaiI	YATR	1 cut(s)	47
FaqI	GGGAC	1 cut(s)	58
FauI	CCCGC	1 cut(s)	195
Fnu4HI	GCNGC	1 cut(s)	92
FokI	GGATG	1 cut(s)	144
Fsp4HI	GCNGC	1 cut(s)	92
FspBI	CTAG	2 cut(s)	53, 137
GlaI	GCGC	1 cut(s)	90
GluI	GCNGC	1 cut(s)	92
HaeIII	GGCC	1 cut(s)	51
HhaI	GCGC	1 cut(s)	91
Hin6I	GCGC	1 cut(s)	89
HinP1I	GCGC	1 cut(s)	89
HinfI	GANTC	1 cut(s)	15
Hpy188I	TCNGA	3 cut(s)	12, 107, 209
HpyCH4IV	ACGT	1 cut(s)	100
HpyCH4V	TGCA	2 cut(s)	45, 121
HpySE526I	ACGT	1 cut(s)	100
HspAI	GCGC	1 cut(s)	89
Kzo9I	GATC	1 cut(s)	7
LmnI	GCTCC	1 cut(s)	147
LpnPI	CCDG	1 cut(s)	32
LweI	GCATC	1 cut(s)	166
MaeI	CTAG	2 cut(s)	53, 137
MaeII	ACGT	1 cut(s)	100
MalI	GATC	1 cut(s)	9
MboI	GATC	1 cut(s)	7
MboII	GAAGA	2 cut(s)	17, 55
MhlI	GDGCHC	1 cut(s)	144
MmeI	TCCRAC	1 cut(s)	130
MnlI	CCTC	7 cut(s)	50, 68, 71, 89, 120, 155, 201
MvnI	CGCG	1 cut(s)	89
NdeII	GATC	1 cut(s)	7
NlaIV	GGNNCC	1 cut(s)	74
PceI	AGGCCT	1 cut(s)	51
PcsI	WCGNNNNNNNCGW	1 cut(s)	93
PfeI	GAWTC	1 cut(s)	15
Pfl23II	CGTACG	1 cut(s)	97
PkrI	GCNGC	1 cut(s)	93
PspLI	CGTACG	1 cut(s)	97
PspN4I	GGNNCC	1 cut(s)	74
PspPI	GGNCC	1 cut(s)	72
RsaI	GTAC	1 cut(s)	99
RsaNI	GTAC	1 cut(s)	98
SatI	GCNGC	1 cut(s)	92
Sau3AI	GATC	1 cut(s)	7
Sau96I	GGNCC	1 cut(s)	72
SduI	GDGCHC	1 cut(s)	144
SetI	ASST	4 cut(s)	81, 103, 112, 207
SfaNI	GCATC	1 cut(s)	166
SgeI	CNNG	7 cut(s)	31, 65, 81, 100, 107, 149, 199
SinI	GGWCC	1 cut(s)	72
SseBI	AGGCCT	1 cut(s)	51
SsiI	CCGC	5 cut(s)	92, 113, 133, 155, 188
SspMI	CTAG	2 cut(s)	53, 137
StuI	AGGCCT	1 cut(s)	51
TaiI	ACGT	1 cut(s)	103
TauI	GCSGC	1 cut(s)	94
TfiI	GAWTC	1 cut(s)	15
VpaK11BI	GGWCC	1 cut(s)	72
XspI	CTAG	2 cut(s)	53, 137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.