Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002010

Physical Location & Seq

Genomic Coordinates Forward (+)

10707811 .. 10708392

Gene Structure 582 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g15380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGAAGGTCGGAGATTCCTGCGTTTTTTCTCCCTTTCCCTCTGCATAGGCCTAGTCCTCCTCTTCACTTGGTCCCACCTCCCTTACGCGCCGCCTTACGTCTCCGACCTCCTCGACTGCACAACAAACTCCGCCTGGTGCTCCTCCAAAAACCGCATCCAATCCAAACCCCCTATCCCAACGCGCCGCCTCAAAGACCACAGCTCCGACACCCCCCACCACCCTCTCGACCCCCTCACCATCCAAGAACTCAACGCCGTCCGCACCATCCTCAACTCCCACGCGCTCTTCACCTCCACCTCCGCCTACGCGCTCCACTCCGTCGAGCTCCAGGAGCCCGACAAGTCCCTCGTCCTCGGATGGAAGCACGGCGACCCTCTCTTCCCCAGAAAGGCTTCTATCGTCGCACGTGTCGACAGCAAGTCGCTCGTGCTAACCGTTGACCTGACCACGTCCGAGGTGACCGTTCACGAGACCGGCTCCCACTACGGTTACCCGACGATGACGCTGGAGGAGCTGACCGCTGCCACGTTCAGCCCCCTCAAGAACGCTGATTTCAACCGTACGATCGATCCTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001505 GO:0006807 GO:0006809 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009987 GO:0010033 GO:0017144 GO:0023052 GO:0032870 GO:0033993 GO:0034641 GO:0042133 GO:0042136 GO:0042221 GO:0044237 GO:0044249 GO:0044271 GO:0046209 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0065008 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0072593 GO:0097305 GO:0097306 GO:1901700 GO:1901701 GO:1903409 GO:2001057

KEGG Pathways

Metabolic & Signaling

ko00260 ko00350 ko00360 ko00410 ko00950 ko00960 ko01100 ko01110 map00260 map00350 map00360 map00410 map00950 map00960 map01100 map01110

Pfam Domains

Protein Families

Cu_amine_oxid Cu_amine_oxidN2 Cu_amine_oxidN3

Protein Analysis

194

Amino Acids

21.59

Weight (kDa)

6.75

Isoelectric Point (pI)

36.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_amine_oxidN2	PF02727	74 - 155	1.6e-20	Copper amine oxidase, N2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12270 AT4G12280 AT4G12290 AT4G12290
fragaria_vesca	FvH4_5g00610 FvH4_5g00610 FvH4_5g00610 FvH4_5g00610 FvH4_5g00610
malus_domestica	MD02G1257400.v1.1 MD06G1075500.v1.1 MD16G1192400.v1.1
prunus_persica	Prupe.5G078700_v2.0.a1 Prupe.5G078900_v2.0.a1
pyrus_communis	pycom09g07970 pycom13g04890 pycom15g15380 pycom15g15390
rosa_chinensis	RchiOBHm_Chr5g0060271 RchiOBHm_Chr7g0201651 RchiOBHm_Chr7g0201661
rosa_laevigata	RLG00000003658
rosa_multiflora	Rmu_sc0001512.1_g000015 Rmu_sc0004811.1_g000006 Rmu_sc0004811.1_g000008 Rmu_sc0004811.1_g000009 Rmu_sc0004811.1_g000010 Rmu_sc0004811.1_g000011
rosa_roxburghii	Rroxscaffold_3G00255130 Rroxscaffold_3G00255140 Rroxscaffold_3G00255150 Rroxscaffold_6G00396720
rosa_rugosa	Rorug07G0065300 Rorug07G0065300
rosa_samantha	Rh7AG192300 Rh7AG192500 Rh7BG194400 Rh7BG194500 Rh7BG194600 Rh7CG203500 Rh7CG203600 Rh7CG203700 Rh7DG197700
rosa_wichuraiana	Rw7G016860 Rw7G016870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	414
AccII	CGCG	4 cut(s)	89, 184, 284, 311
AciI	CCGC	7 cut(s)	92, 132, 154, 187, 262, 303, 522
AclWI	GGATC	1 cut(s)	566
AcvI	CACGTG	1 cut(s)	410
AfaI	GTAC	1 cut(s)	565
AfiI	CCNNNNNNNGG	1 cut(s)	391
AflIII	ACRYGT	1 cut(s)	409
AgsI	TTSAA	1 cut(s)	559
AhdI	GACNNNNNGTC	1 cut(s)	421
AjiI	CACGTC	1 cut(s)	453
AjnI	CCWGG	2 cut(s)	134, 330
AluBI	AGCT	3 cut(s)	204, 328, 517
AluI	AGCT	3 cut(s)	204, 328, 517
Alw21I	GWGCWC	2 cut(s)	143, 330
Alw26I	GTCTC	2 cut(s)	106, 467
AlwI	GGATC	1 cut(s)	566
AoxI	GGCC	1 cut(s)	49
ApeKI	GCWGC	1 cut(s)	524
Asp700I	GAANNNNTTC	1 cut(s)	394
AspLEI	GCGC	4 cut(s)	91, 186, 286, 313
AspS9I	GGNCC	1 cut(s)	72
AsuHPI	GGTGA	3 cut(s)	229, 283, 472
AvaII	GGWCC	1 cut(s)	72
BanII	GRGCYC	2 cut(s)	330, 339
BauI	CACGAG	2 cut(s)	428, 470
BbrPI	CACGTG	1 cut(s)	410
Bbv12I	GWGCWC	2 cut(s)	143, 330
BbvI	GCAGC	1 cut(s)	511
BccI	CCATC	3 cut(s)	248, 275, 354
BceAI	ACGGC	2 cut(s)	242, 385
BcgI	CGANNNNNNTGC	2 cut(s)	409, 443
BciT130I	CCWGG	2 cut(s)	136, 332
BcoDI	GTCTC	2 cut(s)	106, 467
BfaI	CTAG	1 cut(s)	53
BisI	GCNGC	3 cut(s)	92, 187, 525
BlsI	GCNGC	3 cut(s)	93, 188, 526
Bme1390I	CCNGG	2 cut(s)	136, 332
Bme18I	GGWCC	1 cut(s)	72
BmeRI	GACNNNNNGTC	1 cut(s)	421
BmgBI	CACGTC	1 cut(s)	453
BmgT120I	GGNCC	1 cut(s)	72
BmiI	GGNNCC	3 cut(s)	74, 336, 481
BmrFI	CCNGG	2 cut(s)	136, 332
BmsI	GCATC	1 cut(s)	165
BplI	GAGNNNNNCTC	2 cut(s)	464, 496
BpmI	CTGGAG	2 cut(s)	314, 530
BpuEI	CTTGAG	1 cut(s)	527
Bsa29I	ATCGAT	1 cut(s)	570
BsaAI	YACGTR	1 cut(s)	410
BsaI	GGTCTC	1 cut(s)	467
BsaJI	CCNNGG	2 cut(s)	355, 456
BsaXI	ACNNNNNCTCC	2 cut(s)	188, 218
Bsc4I	CCNNNNNNNGG	1 cut(s)	391
Bse118I	RCCGGY	1 cut(s)	476
BseBI	CCWGG	2 cut(s)	136, 332
BseCI	ATCGAT	1 cut(s)	570
BseDI	CCNNGG	2 cut(s)	355, 456
BseGI	GGATG	4 cut(s)	156, 240, 267, 365
BseLI	CCNNNNNNNGG	1 cut(s)	391
BseRI	GAGGAG	4 cut(s)	50, 101, 133, 527
BseXI	GCAGC	1 cut(s)	511
BsgI	GTGCAG	1 cut(s)	103
Bsh1236I	CGCG	4 cut(s)	89, 184, 284, 311
Bsh1285I	CGRYCG	1 cut(s)	570
BshFI	GGCC	1 cut(s)	51
BshVI	ATCGAT	1 cut(s)	570
BsiEI	CGRYCG	1 cut(s)	570
BsiHKAI	GWGCWC	2 cut(s)	143, 330
BsiSI	CCGG	1 cut(s)	477
BsiWI	CGTACG	1 cut(s)	563
BslFI	GGGAC	2 cut(s)	58, 331
BslI	CCNNNNNNNGG	1 cut(s)	391
BsmAI	GTCTC	2 cut(s)	106, 467
BsmBI	CGTCTC	1 cut(s)	106
BsmFI	GGGAC	2 cut(s)	58, 331
BsnI	GGCC	1 cut(s)	51
Bso31I	GGTCTC	1 cut(s)	467
Bsp1286I	GDGCHC	3 cut(s)	143, 330, 339
Bsp143I	GATC	2 cut(s)	567, 571
BspACI	CCGC	7 cut(s)	92, 132, 154, 187, 262, 303, 522
BspANI	GGCC	1 cut(s)	51
BspDI	ATCGAT	1 cut(s)	570
BspFNI	CGCG	4 cut(s)	89, 184, 284, 311
BspLI	GGNNCC	3 cut(s)	74, 336, 481
BspPI	GGATC	1 cut(s)	566
BspQI	GCTCTTC	1 cut(s)	293
BspTNI	GGTCTC	1 cut(s)	467
BsrFI	RCCGGY	1 cut(s)	476
BssAI	RCCGGY	1 cut(s)	476
BssECI	CCNNGG	2 cut(s)	355, 456
BssMI	GATC	2 cut(s)	567, 571
BssSI	CACGAG	2 cut(s)	428, 470
Bst2BI	CACGAG	2 cut(s)	428, 470
Bst2UI	CCWGG	2 cut(s)	136, 332
Bst4CI	ACNGT	4 cut(s)	439, 466, 491, 563
Bst6I	CTCTTC	3 cut(s)	68, 293, 386
BstBAI	YACGTR	1 cut(s)	410
BstEII	GGTNACC	2 cut(s)	460, 491
BstF5I	GGATG	4 cut(s)	156, 240, 267, 365
BstFNI	CGCG	4 cut(s)	89, 184, 284, 311
BstHHI	GCGC	4 cut(s)	91, 186, 286, 313
BstKTI	GATC	2 cut(s)	570, 574
BstMAI	GTCTC	2 cut(s)	106, 467
BstMBI	GATC	2 cut(s)	567, 571
BstMCI	CGRYCG	1 cut(s)	570
BstMWI	GCNNNNNNNGC	2 cut(s)	334, 514
BstNI	CCWGG	2 cut(s)	136, 332
BstPI	GGTNACC	2 cut(s)	460, 491
BstSCI	CCNGG	2 cut(s)	134, 330
BstUI	CGCG	4 cut(s)	89, 184, 284, 311
BstV1I	GCAGC	1 cut(s)	511
Bsu15I	ATCGAT	1 cut(s)	570
BsuRI	GGCC	1 cut(s)	51
BsuTUI	ATCGAT	1 cut(s)	570
BtrI	CACGTC	1 cut(s)	453
BtsCI	GGATG	4 cut(s)	156, 240, 267, 365
CfoI	GCGC	4 cut(s)	91, 186, 286, 313
Cfr10I	RCCGGY	1 cut(s)	476
Cfr13I	GGNCC	1 cut(s)	72
ClaI	ATCGAT	1 cut(s)	570
CseI	GACGC	1 cut(s)	514
Csp6I	GTAC	1 cut(s)	564
CviJI	RGCY	8 cut(s)	51, 204, 328, 337, 395, 480, 517, 537
CviKI_1	RGCY	8 cut(s)	51, 204, 328, 337, 395, 480, 517, 537
CviQI	GTAC	1 cut(s)	564
DpnI	GATC	2 cut(s)	569, 573
DpnII	GATC	2 cut(s)	567, 571
DriI	GACNNNNNGTC	1 cut(s)	421
Eam1104I	CTCTTC	3 cut(s)	68, 293, 386
Eam1105I	GACNNNNNGTC	1 cut(s)	421
EarI	CTCTTC	3 cut(s)	68, 293, 386
EciI	GGCGGA	2 cut(s)	121, 292
Ecl136II	GAGCTC	1 cut(s)	328
Eco147I	AGGCCT	1 cut(s)	51
Eco24I	GRGCYC	2 cut(s)	330, 339
Eco31I	GGTCTC	1 cut(s)	467
Eco47I	GGWCC	1 cut(s)	72
Eco53kI	GAGCTC	1 cut(s)	328
Eco72I	CACGTG	1 cut(s)	410
Eco91I	GGTNACC	2 cut(s)	460, 491
EcoICRI	GAGCTC	1 cut(s)	328
EcoO65I	GGTNACC	2 cut(s)	460, 491
EcoRII	CCWGG	2 cut(s)	134, 330
EcoT38I	GRGCYC	2 cut(s)	330, 339
Esp3I	CGTCTC	1 cut(s)	106
FaiI	YATR	1 cut(s)	47
FaqI	GGGAC	2 cut(s)	58, 331
FblI	GTMKAC	1 cut(s)	414
Fnu4HI	GCNGC	3 cut(s)	92, 187, 525
FokI	GGATG	4 cut(s)	143, 227, 254, 372
FriOI	GRGCYC	2 cut(s)	330, 339
Fsp4HI	GCNGC	3 cut(s)	92, 187, 525
FspBI	CTAG	1 cut(s)	53
GlaI	GCGC	4 cut(s)	90, 185, 285, 312
GluI	GCNGC	3 cut(s)	92, 187, 525
GsuI	CTGGAG	2 cut(s)	314, 530
HaeIII	GGCC	1 cut(s)	51
HapII	CCGG	1 cut(s)	477
HgaI	GACGC	1 cut(s)	514
HhaI	GCGC	4 cut(s)	91, 186, 286, 313
Hin6I	GCGC	4 cut(s)	89, 184, 284, 311
HinP1I	GCGC	4 cut(s)	89, 184, 284, 311
HincII	GTYRAC	2 cut(s)	415, 442
HindII	GTYRAC	2 cut(s)	415, 442
HinfI	GANTC	1 cut(s)	15
HpaII	CCGG	1 cut(s)	477
HphI	GGTGA	3 cut(s)	229, 283, 472
Hpy166II	GTNNAC	3 cut(s)	415, 442, 469
Hpy188I	TCNGA	5 cut(s)	12, 106, 208, 359, 457
Hpy188III	TCNNGA	3 cut(s)	227, 470, 544
Hpy8I	GTNNAC	3 cut(s)	415, 442, 469
Hpy99I	CGWCG	3 cut(s)	326, 407, 502
HpyCH4III	ACNGT	4 cut(s)	439, 466, 491, 563
HpyCH4IV	ACGT	4 cut(s)	99, 409, 452, 530
HpyCH4V	TGCA	2 cut(s)	45, 120
HpyF10VI	GCNNNNNNNGC	2 cut(s)	334, 514
HpySE526I	ACGT	4 cut(s)	99, 409, 452, 530
HspAI	GCGC	4 cut(s)	89, 184, 284, 311
Kzo9I	GATC	2 cut(s)	567, 571
LguI	GCTCTTC	1 cut(s)	293
LmnI	GCTCC	7 cut(s)	146, 209, 318, 333, 334, 485, 514
LpnPI	CCDG	9 cut(s)	32, 121, 148, 317, 344, 400, 458, 490, 494
Lsp1109I	GCAGC	1 cut(s)	511
LweI	GCATC	1 cut(s)	165
MaeI	CTAG	1 cut(s)	53
MaeII	ACGT	4 cut(s)	99, 409, 452, 530
MaeIII	GTNAC	2 cut(s)	460, 491
MalI	GATC	2 cut(s)	569, 573
MboI	GATC	2 cut(s)	567, 571
MboII	GAAGA	3 cut(s)	55, 280, 373
MhlI	GDGCHC	3 cut(s)	143, 330, 339
MmeI	TCCRAC	2 cut(s)	129, 231
MroXI	GAANNNNTTC	1 cut(s)	394
MseI	TTAA	1 cut(s)	580
MspA1I	CMGCKG	1 cut(s)	524
MspI	CCGG	1 cut(s)	477
MspR9I	CCNGG	2 cut(s)	136, 332
MvaI	CCWGG	2 cut(s)	136, 332
MvnI	CGCG	4 cut(s)	89, 184, 284, 311
MwoI	GCNNNNNNNGC	2 cut(s)	334, 514
NdeII	GATC	2 cut(s)	567, 571
NlaIV	GGNNCC	3 cut(s)	74, 336, 481
NmuCI	GTSAC	1 cut(s)	460
PceI	AGGCCT	1 cut(s)	51
PciSI	GCTCTTC	1 cut(s)	293
PcsI	WCGNNNNNNNCGW	2 cut(s)	411, 435
PdmI	GAANNNNTTC	1 cut(s)	394
PfeI	GAWTC	1 cut(s)	15
Pfl23II	CGTACG	1 cut(s)	563
PflFI	GACNNNGTC	1 cut(s)	451
PfoI	TCCNGGA	1 cut(s)	330
PkrI	GCNGC	3 cut(s)	93, 188, 526
Ple19I	CGATCG	1 cut(s)	570
PmaCI	CACGTG	1 cut(s)	410
PmlI	CACGTG	1 cut(s)	410
Ppu21I	YACGTR	1 cut(s)	410
Psp124BI	GAGCTC	1 cut(s)	330
Psp6I	CCWGG	2 cut(s)	134, 330
PspCI	CACGTG	1 cut(s)	410
PspEI	GGTNACC	2 cut(s)	460, 491
PspGI	CCWGG	2 cut(s)	134, 330
PspLI	CGTACG	1 cut(s)	563
PspN4I	GGNNCC	3 cut(s)	74, 336, 481
PspPI	GGNCC	1 cut(s)	72
PsyI	GACNNNGTC	1 cut(s)	451
PvuI	CGATCG	1 cut(s)	570
RsaI	GTAC	1 cut(s)	565
RsaNI	GTAC	1 cut(s)	564
SacI	GAGCTC	1 cut(s)	330
SalI	GTCGAC	1 cut(s)	413
SapI	GCTCTTC	1 cut(s)	293
SaqAI	TTAA	1 cut(s)	580
SatI	GCNGC	3 cut(s)	92, 187, 525
Sau3AI	GATC	2 cut(s)	567, 571
Sau96I	GGNCC	1 cut(s)	72
ScrFI	CCNGG	2 cut(s)	136, 332
SduI	GDGCHC	3 cut(s)	143, 330, 339
SfaNI	GCATC	1 cut(s)	165
SinI	GGWCC	1 cut(s)	72
SmlI	CTYRAG	1 cut(s)	542
SmoI	CTYRAG	1 cut(s)	542
SseBI	AGGCCT	1 cut(s)	51
SsiI	CCGC	7 cut(s)	92, 132, 154, 187, 262, 303, 522
SspMI	CTAG	1 cut(s)	53
SstI	GAGCTC	1 cut(s)	330
StuI	AGGCCT	1 cut(s)	51
StyD4I	CCNGG	2 cut(s)	134, 330
TaaI	ACNGT	4 cut(s)	439, 466, 491, 563
TaiI	ACGT	4 cut(s)	102, 412, 455, 533
TaqI	TCGA	5 cut(s)	114, 228, 324, 414, 570
TauI	GCSGC	2 cut(s)	94, 189
TfiI	GAWTC	1 cut(s)	15
Tru1I	TTAA	1 cut(s)	580
Tru9I	TTAA	1 cut(s)	580
TseFI	GTSAC	1 cut(s)	460
TseI	GCWGC	1 cut(s)	524
Tsp45I	GTSAC	1 cut(s)	460
TspGWI	ACGGA	1 cut(s)	310
Tth111I	GACNNNGTC	1 cut(s)	451
VpaK11BI	GGWCC	1 cut(s)	72
XmiI	GTMKAC	1 cut(s)	414
XmnI	GAANNNNTTC	1 cut(s)	394
XspI	CTAG	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.