Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0002010

Physical Location & Seq

Genomic Coordinates Reverse (-)

16996048 .. 16996387

Gene Structure 340 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1192400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGGAGCAGGATAGGGACGTTGAAAATAAAGACATTGTGTTATGGTACACCATGAGTTTTCATCATGTGCCATTCCAAGAAGATTTTCCCATAATGCCAACGATCAGCGGCCAGTTTGAGCTCCGACAGAGCAATTTCTTCGAAAGCAATCCAGTGTCAAAAAACAAGCCACCCCAATATGTGAGGGGTTCAAATTGCTCATCCAGCTTCAGCATTGTCACAGGAAGAAACTCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0016491 GO:0016638 GO:0016641 GO:0042221 GO:0050896 GO:0051716 GO:0052597 GO:0055114 GO:0070887 GO:0071241 GO:0097184 GO:0097185 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

ko00260 ko00350 ko00360 ko00410 ko00950 ko00960 ko01100 ko01110 map00260 map00350 map00360 map00410 map00950 map00960 map01100 map01110

Pfam Domains

Protein Families

Cu_amine_oxid Cu_amine_oxidN2 Cu_amine_oxidN3

Protein Analysis

80

Amino Acids

9.13

Weight (kDa)

5.51

Isoelectric Point (pI)

59.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_amine_oxid	PF01179	2 - 52	1.9e-17	Copper amine oxidase, enzyme domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12270 AT4G12280 AT4G12290 AT4G12290
fragaria_vesca	FvH4_5g00610 FvH4_5g00610 FvH4_5g00610 FvH4_5g00610 FvH4_5g00610
malus_domestica	MD02G1257400.v1.1 MD06G1075500.v1.1 MD16G1192400.v1.1
prunus_persica	Prupe.5G078700_v2.0.a1 Prupe.5G078900_v2.0.a1
pyrus_communis	pycom09g07970 pycom13g04890 pycom15g15380 pycom15g15390
rosa_chinensis	RchiOBHm_Chr5g0060271 RchiOBHm_Chr7g0201651 RchiOBHm_Chr7g0201661
rosa_laevigata	RLG00000003658
rosa_multiflora	Rmu_sc0001512.1_g000015 Rmu_sc0004811.1_g000006 Rmu_sc0004811.1_g000008 Rmu_sc0004811.1_g000009 Rmu_sc0004811.1_g000010 Rmu_sc0004811.1_g000011
rosa_roxburghii	Rroxscaffold_3G00255130 Rroxscaffold_3G00255140 Rroxscaffold_3G00255150 Rroxscaffold_6G00396720
rosa_rugosa	Rorug07G0065300 Rorug07G0065300
rosa_samantha	Rh7AG192300 Rh7AG192500 Rh7BG194400 Rh7BG194500 Rh7BG194600 Rh7CG203500 Rh7CG203600 Rh7CG203700 Rh7DG197700
rosa_wichuraiana	Rw7G016860 Rw7G016870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	108
AcoI	YGGCCR	1 cut(s)	109
AcuI	CTGAAG	1 cut(s)	193
AfaI	GTAC	1 cut(s)	47
AgsI	TTSAA	2 cut(s)	23, 192
AjuI	GAANNNNNNNTTGG	2 cut(s)	69, 101
AluBI	AGCT	2 cut(s)	121, 207
AluI	AGCT	2 cut(s)	121, 207
Alw21I	GWGCWC	1 cut(s)	123
AoxI	GGCC	1 cut(s)	109
Asp700I	GAANNNNTTC	1 cut(s)	84
AsuII	TTCGAA	1 cut(s)	141
BanII	GRGCYC	1 cut(s)	123
Bbv12I	GWGCWC	1 cut(s)	123
BcgI	CGANNNNNNTGC	2 cut(s)	121, 155
BisI	GCNGC	1 cut(s)	109
BlsI	GCNGC	1 cut(s)	110
Bpu14I	TTCGAA	1 cut(s)	141
Bse1I	ACTGG	2 cut(s)	112, 152
BseGI	GGATG	1 cut(s)	200
BseNI	ACTGG	2 cut(s)	112, 152
BshFI	GGCC	1 cut(s)	111
BsiHKAI	GWGCWC	1 cut(s)	123
BslFI	GGGAC	1 cut(s)	29
BsmFI	GGGAC	1 cut(s)	29
BsnI	GGCC	1 cut(s)	111
Bsp119I	TTCGAA	1 cut(s)	141
Bsp1286I	GDGCHC	1 cut(s)	123
Bsp143I	GATC	1 cut(s)	102
BspACI	CCGC	1 cut(s)	108
BspANI	GGCC	1 cut(s)	111
BspT104I	TTCGAA	1 cut(s)	141
BsrI	ACTGG	2 cut(s)	112, 152
BssMI	GATC	1 cut(s)	102
BstBI	TTCGAA	1 cut(s)	141
BstF5I	GGATG	1 cut(s)	200
BstKTI	GATC	1 cut(s)	105
BstMBI	GATC	1 cut(s)	102
BstMWI	GCNNNNNNNGC	1 cut(s)	204
BsuRI	GGCC	1 cut(s)	111
BtsCI	GGATG	1 cut(s)	200
BtsIMutI	CAGTG	1 cut(s)	159
Csp6I	GTAC	1 cut(s)	46
CviAII	CATG	2 cut(s)	52, 65
CviJI	RGCY	4 cut(s)	111, 121, 169, 207
CviKI_1	RGCY	4 cut(s)	111, 121, 169, 207
CviQI	GTAC	1 cut(s)	46
DpnI	GATC	1 cut(s)	104
DpnII	GATC	1 cut(s)	102
EaeI	YGGCCR	1 cut(s)	109
Ecl136II	GAGCTC	1 cut(s)	121
Eco24I	GRGCYC	1 cut(s)	123
Eco53kI	GAGCTC	1 cut(s)	121
Eco57I	CTGAAG	1 cut(s)	193
EcoICRI	GAGCTC	1 cut(s)	121
EcoT38I	GRGCYC	1 cut(s)	123
FaeI	CATG	2 cut(s)	55, 68
FaiI	YATR	5 cut(s)	43, 53, 66, 92, 180
FaqI	GGGAC	1 cut(s)	29
FatI	CATG	2 cut(s)	51, 64
Fnu4HI	GCNGC	1 cut(s)	109
FokI	GGATG	1 cut(s)	187
FriOI	GRGCYC	1 cut(s)	123
Fsp4HI	GCNGC	1 cut(s)	109
GluI	GCNGC	1 cut(s)	109
HaeIII	GGCC	1 cut(s)	111
Hin1II	CATG	2 cut(s)	55, 68
Hpy166II	GTNNAC	1 cut(s)	48
Hpy188I	TCNGA	1 cut(s)	125
Hpy8I	GTNNAC	1 cut(s)	48
HpyCH4IV	ACGT	1 cut(s)	18
HpyF10VI	GCNNNNNNNGC	1 cut(s)	204
HpySE526I	ACGT	1 cut(s)	18
Hsp92II	CATG	2 cut(s)	55, 68
Kzo9I	GATC	1 cut(s)	102
LmnI	GCTCC	2 cut(s)	4, 126
LpnPI	CCDG	4 cut(s)	125, 165, 207, 217
MaeII	ACGT	1 cut(s)	18
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	1 cut(s)	104
MboI	GATC	1 cut(s)	102
MboII	GAAGA	3 cut(s)	92, 130, 237
MhlI	GDGCHC	1 cut(s)	123
MluCI	AATT	2 cut(s)	133, 193
MmeI	TCCRAC	1 cut(s)	148
MnlI	CCTC	1 cut(s)	177
MroXI	GAANNNNTTC	1 cut(s)	84
MspA1I	CMGCKG	1 cut(s)	108
MwoI	GCNNNNNNNGC	1 cut(s)	204
NdeII	GATC	1 cut(s)	102
NlaIII	CATG	2 cut(s)	55, 68
NmuCI	GTSAC	1 cut(s)	217
NspV	TTCGAA	1 cut(s)	141
PdmI	GAANNNNTTC	1 cut(s)	84
PkrI	GCNGC	1 cut(s)	110
Psp124BI	GAGCTC	1 cut(s)	123
RsaI	GTAC	1 cut(s)	47
RsaNI	GTAC	1 cut(s)	46
SacI	GAGCTC	1 cut(s)	123
SatI	GCNGC	1 cut(s)	109
Sau3AI	GATC	1 cut(s)	102
SduI	GDGCHC	1 cut(s)	123
SetI	ASST	3 cut(s)	21, 123, 209
SfuI	TTCGAA	1 cut(s)	141
SgeI	CNNG	9 cut(s)	20, 64, 77, 89, 124, 164, 178, 216, 234
Sse9I	AATT	2 cut(s)	133, 193
SsiI	CCGC	1 cut(s)	108
SstI	GAGCTC	1 cut(s)	123
TaiI	ACGT	1 cut(s)	21
TaqI	TCGA	1 cut(s)	141
TasI	AATT	2 cut(s)	133, 193
TauI	GCSGC	1 cut(s)	111
TscAI	CASTG	1 cut(s)	159
TseFI	GTSAC	1 cut(s)	217
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	1 cut(s)	50
TspRI	CASTG	1 cut(s)	159
XmnI	GAANNNNTTC	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.