Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_samantha

Chromosome

Unknown

Orthogroup ID

OG0002010

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG197700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2190 bp

ATGGAAACCCCAAACTTCTTCCGCTTCTGCTCTCTCTCTATCTGCGCCGGACTTGTCCTCCTCTTCACTTGGTCTCACTTCCCTTCCGGACCGGACCTCCTTGACTGCACCACCAACTCTGCATGGTGCACCTCCAAGAACCGCTTCCAATCCAAGCAACCAAGCCACCTCAAAAACCGCCACAACAACCCAGCGCGCCACCGCAACCACGCCTCCGACACGCCCCATCACCCGCTAGACCCGCTCACGGTTCAAGAGATCAACAAAATCAGAACCATCATCTCCTCCCACCCGATCTTCTCAACCTCCGCTGGCTACGCGCTCCACTCCATCGAGCTGGAGGAGCCGGAGAAGCCTCTCGTCCTGAAATGGAAAGAGGGCGACCCGCTGTTTCCGAGGAAGGCATCCGTCGTCGCGCGTGTGAAAGGCGAGTCGCACGTGCTGACCGTCGACTTGACCACCAGCGAGGTCACCGTGCATCAGACCGGTCCCCATTCCGGTTATCCTACGATGACGCTGGAGGACATGACCACGGCCACGTGGGCCCCGCTGGCGGACGCGACGTTCAACCGGACGATCATCGAGCGAGGGGTTGATCTGACGGACCTGGCTTGCCTGCCGATTTCGCTGGGATGGTACGGTAAAACGGAGGAGAACAGGAGGCTGATTAAGGTGCAGTGCTACTCCATGAAAGATACGGTGAACTTCTACATGAGGCCAATCGAAGGGTTGACCGTGCTTCTTGACTTGGACACTAAACAAGTGGTAGAGATTTCAGATAAGGGCGCGAACATTCCTATACCAACTGCCGCCAACACGGACTATAGGTACGCGGCTCAGAAGCAAAACCAGGTGATCAAGCTACTAAAGCCAATATCAATAGAGCAACCCCAGGGTCCGAGTTTTACAGTAGAGGATGACCACTTGGTCAAGTGGGCAAATTGGGAATTTCATGTGAAGCCCGACGCCAGGGCCGGGGTGATCGTGTCTCGGGCCAAGGTCCGAGACCCCGATACCGGAGAATTGAGGGATGTCATGTACAAAGGGTTCACTTCGGAGTTGTTTGTGCCTTACATGGACCCTACCGATGCTTGGTACTTCAAGACTTATATGGATGCGGGCGAATATGGGTTTGGATTGCAAGCCATGCCTCTCGAACCCCTTAATGATTGCCCGCGTAACGCCCATTATATGGATGGGGTGTTTGCAGCGGCCGACGGAACACCTTATGTCCGATCGAATATGGTTTGCATTTTCGAGAGCTATGCAGGTGATATCGGGTGGCGCCACACGGAGAGTCCCATAACGGGCATGGAGGTGAGAGAAGTGAGGCCAAAGGTGACACTAGTGGTTAGAATGGCAGCGTCAGTTGGTAACTATGACTATATCGTGGACTGGGAGTTCCAAACAGACGGATTAATCAGAGTAAAGGTTGGACTTAGTGGCATTTTGATGGTGAAAGGCACACCCTATGAGAACATGAACCAGGTCTTTGACCAAGACAATCTCCACGGCACTCTGTTATCTGAAAACGTTGTTGGAGTTATTCATGACCATTACATAACATTTCATCTTGATATGGATGTAGACGGTTCTGAAAATTCCTTTGTTAAAGTGAATCTCCAAAGGCAGCAAACCTCTCCTGATGAGTCCCCAAGGAAAAGCTTCTTGAAAGCAACTAGAACTGTGGCCAAAACGGAGAAGGATGCACAAGTCAAGCTAAGACTCTATGACCCGTCGGAGTTCCATGTGATCAACCCGTCGAAACAGACCCGGGTTGGGAACCCTGTCGGGTATAAGGTGGTTCCTGGTGCCACTGCTGCTAGTTTGCTTGATCCTGAAGACCCTCCCCAAAAGAGGGCTGCTTTTACGAATAACCAAATCTGGGTCACTCAATACAATCGGAGTGAGCAGTGGGCAGGTGGGTTGTTTGCTTACCAAAGCCATGGAGAAGATACTTTGGCCATGTGGTCTGACAAGGATCGAGAAATTGAGAATAAAGACATTGTGGTTTGGTACACATTAGGGTTTCATCACATGCCATGCCAAGAAGACTTTCCTATAATGCCGACGGTGTCATCTAGCTTTGATTTGAAGCCTGTGAATTTCTTTCAGAGCAACCCCATACTCCGGACGCCGCCTAATGTTGAGAGTGATTTGCCTGTTTGCTCACCTGTTGCTTCAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001505 GO:0006807 GO:0006809 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009987 GO:0010033 GO:0017144 GO:0023052 GO:0032870 GO:0033993 GO:0034641 GO:0042133 GO:0042136 GO:0042221 GO:0044237 GO:0044249 GO:0044271 GO:0046209 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0065008 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0072593 GO:0097305 GO:0097306 GO:1901700 GO:1901701 GO:1903409 GO:2001057

KEGG Pathways

Metabolic & Signaling

ko00260 ko00350 ko00360 ko00410 ko00950 ko00960 ko01100 ko01110 map00260 map00350 map00360 map00410 map00950 map00960 map01100 map01110

Pfam Domains

Protein Families

Cu_amine_oxid Cu_amine_oxidN2 Cu_amine_oxidN3

Protein Analysis

729

Amino Acids

82.15

Weight (kDa)

5.75

Isoelectric Point (pI)

39.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_amine_oxidN2	PF02727	77 - 158	2.6e-21	Copper amine oxidase, N2 domain
Cu_amine_oxidN3	PF02728	169 - 268	8.7e-25	Copper amine oxidase, N3 domain
Cu_amine_oxid	PF01179	293 - 709	7e-142	Copper amine oxidase, enzyme domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12270 AT4G12280 AT4G12290 AT4G12290
fragaria_vesca	FvH4_5g00610 FvH4_5g00610 FvH4_5g00610 FvH4_5g00610 FvH4_5g00610
malus_domestica	MD02G1257400.v1.1 MD06G1075500.v1.1 MD16G1192400.v1.1
prunus_persica	Prupe.5G078700_v2.0.a1 Prupe.5G078900_v2.0.a1
pyrus_communis	pycom09g07970 pycom13g04890 pycom15g15380 pycom15g15390
rosa_chinensis	RchiOBHm_Chr5g0060271 RchiOBHm_Chr7g0201651 RchiOBHm_Chr7g0201661
rosa_laevigata	RLG00000003658
rosa_multiflora	Rmu_sc0001512.1_g000015 Rmu_sc0004811.1_g000006 Rmu_sc0004811.1_g000008 Rmu_sc0004811.1_g000009 Rmu_sc0004811.1_g000010 Rmu_sc0004811.1_g000011
rosa_roxburghii	Rroxscaffold_3G00255130 Rroxscaffold_3G00255140 Rroxscaffold_3G00255150 Rroxscaffold_6G00396720
rosa_rugosa	Rorug07G0065300 Rorug07G0065300
rosa_samantha	Rh7AG192300 Rh7AG192500 Rh7BG194400 Rh7BG194500 Rh7BG194600 Rh7CG203500 Rh7CG203600 Rh7CG203700 Rh7DG197700
rosa_wichuraiana	Rw7G016860 Rw7G016870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	1259, 1910
AasI	GACNNNNNNGTC	1 cut(s)	926
Acc36I	ACCTGC	2 cut(s)	1259, 1910
AccB1I	GGYRCC	2 cut(s)	1284, 1811
AccB7I	CCANNNNNTGG	1 cut(s)	1192
AccBSI	CCGCTC	1 cut(s)	244
AccI	GTMKAC	2 cut(s)	450, 1587
AccII	CGCG	8 cut(s)	196, 320, 416, 418, 560, 788, 833, 1177
AccIII	TCCGGA	2 cut(s)	86, 2130
AclI	AACGTT	1 cut(s)	1533
AclWI	GGATC	2 cut(s)	1829, 1989
AcoI	YGGCCR	4 cut(s)	534, 1212, 1689, 1962
AcsI	RAATTY	3 cut(s)	947, 1600, 2104
AcuI	CTGAAG	1 cut(s)	1860
AcvI	CACGTG	2 cut(s)	439, 540
AcyI	GRCGYC	3 cut(s)	966, 1285, 2135
AfaI	GTAC	5 cut(s)	638, 830, 1040, 1097, 2018
AgeI	ACCGGT	1 cut(s)	485
AgsI	TTSAA	6 cut(s)	254, 568, 1102, 1672, 2095, 2184
AhlI	ACTAGT	1 cut(s)	1345
AjnI	CCWGG	6 cut(s)	606, 849, 891, 968, 1485, 1807
AjuI	GAANNNNNNNTTGG	8 cut(s)	128, 160, 1116, 1148, 1521, 1553, 2040, 2072
AloI	GAACNNNNNNTCC	4 cut(s)	548, 580, 1385, 1417
AluBI	AGCT	6 cut(s)	337, 862, 1263, 1665, 1720, 2085
AluI	AGCT	6 cut(s)	337, 862, 1263, 1665, 1720, 2085
Alw21I	GWGCWC	1 cut(s)	131
Alw26I	GTCTC	3 cut(s)	78, 993, 999
Alw44I	GTGCAC	1 cut(s)	127
AlwI	GGATC	2 cut(s)	1829, 1989
Ama87I	CYCGRG	2 cut(s)	990, 1773
Aor13HI	TCCGGA	2 cut(s)	86, 2130
AoxI	GGCC	9 cut(s)	534, 543, 716, 972, 993, 1212, 1331, 1689, 1962
ApaI	GGGCCC	1 cut(s)	547
ApaLI	GTGCAC	1 cut(s)	127
ApeKI	GCWGC	5 cut(s)	1208, 1361, 1630, 1820, 1862
ApoI	RAATTY	3 cut(s)	947, 1600, 2104
AseI	ATTAAT	1 cut(s)	1418
AsiGI	ACCGGT	1 cut(s)	485
Asp700I	GAANNNNTTC	3 cut(s)	143, 1664, 2055
AspLEI	GCGC	7 cut(s)	47, 196, 198, 322, 418, 788, 1287
AsuC2I	CCSGG	3 cut(s)	976, 1774, 1775
AvaI	CYCGRG	2 cut(s)	990, 1773
AvaII	GGWCC	7 cut(s)	89, 94, 488, 604, 896, 1000, 1078
BaeGI	GKGCMC	2 cut(s)	131, 547
BalI	TGGCCA	2 cut(s)	1691, 1964
BanI	GGYRCC	2 cut(s)	1284, 1811
BanII	GRGCYC	1 cut(s)	547
BbrPI	CACGTG	2 cut(s)	439, 540
BbsI	GAAGAC	2 cut(s)	1848, 2058
Bbv12I	GWGCWC	1 cut(s)	131
BbvI	GCAGC	5 cut(s)	1220, 1373, 1642, 1807, 1849
BccI	CCATC	6 cut(s)	234, 284, 338, 627, 1190, 1447
BceAI	ACGGC	2 cut(s)	549, 1528
BcgI	CGANNNNNNTGC	2 cut(s)	1247, 1281
BciT130I	CCWGG	6 cut(s)	608, 851, 893, 970, 1487, 1809
BclI	TGATCA	2 cut(s)	855, 1752
BcnI	CCSGG	3 cut(s)	976, 1774, 1775
BcoDI	GTCTC	3 cut(s)	78, 993, 999
BcuI	ACTAGT	1 cut(s)	1345
BfaI	CTAG	5 cut(s)	236, 1346, 1680, 1824, 2082
BfmI	CTRYAG	1 cut(s)	823
BfoI	RGCGCY	1 cut(s)	1288
BfuAI	ACCTGC	2 cut(s)	1259, 1910
BglI	GCCNNNNNGGC	2 cut(s)	542, 551
BisI	GCNGC	9 cut(s)	810, 834, 1209, 1212, 1362, 1631, 1821, 1863, 2138
BlsI	GCNGC	9 cut(s)	811, 835, 1210, 1213, 1363, 1632, 1822, 1864, 2139
Bme1390I	CCNGG	9 cut(s)	608, 851, 893, 970, 976, 1487, 1774, 1775, 1809
Bme18I	GGWCC	7 cut(s)	89, 94, 488, 604, 896, 1000, 1078
BmeT110I	CYCGRG	2 cut(s)	990, 1773
BmrFI	CCNGG	9 cut(s)	608, 851, 893, 970, 976, 1487, 1774, 1775, 1809
BmrI	ACTGGG	1 cut(s)	1405
BmsI	GCATC	5 cut(s)	413, 487, 1078, 1105, 1696
BmuI	ACTGGG	1 cut(s)	1405
BpiI	GAAGAC	2 cut(s)	1848, 2058
BpmI	CTGGAG	2 cut(s)	359, 539
BpuMI	CCSGG	3 cut(s)	976, 1774, 1775
BsaAI	YACGTR	2 cut(s)	439, 540
BsaHI	GRCGYC	3 cut(s)	966, 1285, 2135
BsaI	GGTCTC	2 cut(s)	78, 999
BsaWI	WCCGGW	7 cut(s)	86, 91, 485, 497, 570, 1016, 2130
BsaXI	ACNNNNNCTCC	6 cut(s)	42, 72, 81, 111, 197, 227
Bse118I	RCCGGY	1 cut(s)	485
Bse1I	ACTGG	1 cut(s)	1400
BseAI	TCCGGA	2 cut(s)	86, 2130
BseBI	CCWGG	6 cut(s)	608, 851, 893, 970, 1487, 1809
BseGI	GGATG	8 cut(s)	404, 638, 922, 1036, 1120, 1201, 1588, 1711
BseMII	CTCAG	1 cut(s)	851
BseNI	ACTGG	1 cut(s)	1400
BsePI	GCGCGC	1 cut(s)	194
BseRI	GAGGAG	4 cut(s)	50, 274, 356, 665
BseSI	GKGCMC	2 cut(s)	131, 547
BseX3I	CGGCCG	1 cut(s)	1212
BseXI	GCAGC	5 cut(s)	1220, 1373, 1642, 1807, 1849
BseYI	CCCAGC	2 cut(s)	190, 628
BsgI	GTGCAG	2 cut(s)	91, 695
Bsh1236I	CGCG	8 cut(s)	196, 320, 416, 418, 560, 788, 833, 1177
Bsh1285I	CGRYCG	2 cut(s)	1215, 1238
BshFI	GGCC	9 cut(s)	536, 545, 718, 974, 995, 1214, 1333, 1691, 1964
BshNI	GGYRCC	2 cut(s)	1284, 1811
BshTI	ACCGGT	1 cut(s)	485
BsiEI	CGRYCG	2 cut(s)	1215, 1238
BsiHKAI	GWGCWC	1 cut(s)	131
BsiHKCI	CYCGRG	2 cut(s)	990, 1773
BslFI	GGGAC	3 cut(s)	474, 1284, 1636
BsmAI	GTCTC	3 cut(s)	78, 993, 999
BsmFI	GGGAC	3 cut(s)	474, 1284, 1636
BsnI	GGCC	9 cut(s)	536, 545, 718, 974, 995, 1214, 1333, 1691, 1964
Bso31I	GGTCTC	2 cut(s)	78, 999
BsoBI	CYCGRG	2 cut(s)	990, 1773
Bsp120I	GGGCCC	1 cut(s)	543
Bsp1286I	GDGCHC	2 cut(s)	131, 547
Bsp13I	TCCGGA	2 cut(s)	86, 2130
Bsp1407I	TGTACA	1 cut(s)	1038
Bsp19I	CCATGG	1 cut(s)	1945
BspANI	GGCC	9 cut(s)	536, 545, 718, 974, 995, 1214, 1333, 1691, 1964
BspCNI	CTCAG	1 cut(s)	850
BspEI	TCCGGA	2 cut(s)	86, 2130
BspFNI	CGCG	8 cut(s)	196, 320, 416, 418, 560, 788, 833, 1177
BspHI	TCATGA	1 cut(s)	1549
BspMI	ACCTGC	2 cut(s)	1259, 1910
BspPI	GGATC	2 cut(s)	1829, 1989
BspT107I	GGYRCC	2 cut(s)	1284, 1811
BspTNI	GGTCTC	2 cut(s)	78, 999
BsrBI	CCGCTC	1 cut(s)	244
BsrFI	RCCGGY	1 cut(s)	485
BsrGI	TGTACA	1 cut(s)	1038
BsrI	ACTGG	1 cut(s)	1400
BssAI	RCCGGY	1 cut(s)	485
BssHII	GCGCGC	1 cut(s)	194
BssNI	GRCGYC	3 cut(s)	966, 1285, 2135
BssT1I	CCWWGG	3 cut(s)	996, 1655, 1945
Bst2UI	CCWGG	6 cut(s)	608, 851, 893, 970, 1487, 1809
Bst6I	CTCTTC	1 cut(s)	68
BstACI	GRCGYC	3 cut(s)	966, 1285, 2135
BstAPI	GCANNNNNTGC	1 cut(s)	1147
BstAUI	TGTACA	1 cut(s)	1038
BstBAI	YACGTR	2 cut(s)	439, 540
BstC8I	GCNNGC	8 cut(s)	196, 313, 552, 613, 617, 1120, 1143, 1175
BstDEI	CTNAG	3 cut(s)	837, 1439, 1721
BstDSI	CCRYGG	3 cut(s)	531, 1510, 1945
BstEII	GGTNACC	1 cut(s)	469
BstF5I	GGATG	8 cut(s)	404, 638, 922, 1036, 1120, 1201, 1588, 1711
BstFNI	CGCG	8 cut(s)	196, 320, 416, 418, 560, 788, 833, 1177
BstH2I	RGCGCY	1 cut(s)	1288
BstHHI	GCGC	7 cut(s)	47, 196, 198, 322, 418, 788, 1287
BstMAI	GTCTC	3 cut(s)	78, 993, 999
BstMCI	CGRYCG	2 cut(s)	1215, 1238
BstNI	CCWGG	6 cut(s)	608, 851, 893, 970, 1487, 1809
BstNSI	RCATGY	1 cut(s)	2041
BstPI	GGTNACC	1 cut(s)	469
BstSCI	CCNGG	9 cut(s)	606, 849, 891, 968, 974, 1485, 1772, 1773, 1807
BstSFI	CTRYAG	1 cut(s)	823
BstSLI	GKGCMC	2 cut(s)	131, 547
BstUI	CGCG	8 cut(s)	196, 320, 416, 418, 560, 788, 833, 1177
BstV1I	GCAGC	5 cut(s)	1220, 1373, 1642, 1807, 1849
BstV2I	GAAGAC	2 cut(s)	1848, 2058
BstXI	CCANNNNNNTGG	2 cut(s)	337, 1946
BstZI	CGGCCG	1 cut(s)	1212
BsuRI	GGCC	9 cut(s)	536, 545, 718, 974, 995, 1214, 1333, 1691, 1964
BtgI	CCRYGG	3 cut(s)	531, 1510, 1945
BtsCI	GGATG	8 cut(s)	404, 638, 922, 1036, 1120, 1201, 1588, 1711
BtsI	GCAGTG	3 cut(s)	683, 1815, 1919
BtsIMutI	CAGTG	3 cut(s)	683, 1815, 1919
BveI	ACCTGC	2 cut(s)	1259, 1910
Cac8I	GCNNGC	8 cut(s)	196, 313, 552, 613, 617, 1120, 1143, 1175
CciI	TCATGA	1 cut(s)	1549
CfoI	GCGC	7 cut(s)	47, 196, 198, 322, 418, 788, 1287
Cfr10I	RCCGGY	1 cut(s)	485
Cfr9I	CCCGGG	1 cut(s)	1773
CpoI	CGGWCCG	1 cut(s)	89
CseI	GACGC	5 cut(s)	523, 566, 974, 1353, 2143
CsiI	ACCWGGT	2 cut(s)	849, 1485
Csp6I	GTAC	5 cut(s)	637, 829, 1039, 1096, 2017
CspAI	ACCGGT	1 cut(s)	485
CspI	CGGWCCG	1 cut(s)	89
CviQI	GTAC	5 cut(s)	637, 829, 1039, 1096, 2017
DdeI	CTNAG	3 cut(s)	837, 1439, 1721
DinI	GGCGCC	1 cut(s)	1286
DrdI	GACNNNNNNGTC	1 cut(s)	926
DseDI	GACNNNNNNGTC	1 cut(s)	926
EaeI	YGGCCR	4 cut(s)	534, 1212, 1689, 1962
EagI	CGGCCG	1 cut(s)	1212
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
EciI	GGCGGA	1 cut(s)	569
EclXI	CGGCCG	1 cut(s)	1212
Eco130I	CCWWGG	3 cut(s)	996, 1655, 1945
Eco24I	GRGCYC	1 cut(s)	547
Eco31I	GGTCTC	2 cut(s)	78, 999
Eco32I	GATATC	1 cut(s)	1276
Eco47I	GGWCC	7 cut(s)	89, 94, 488, 604, 896, 1000, 1078
Eco52I	CGGCCG	1 cut(s)	1212
Eco57I	CTGAAG	1 cut(s)	1860
Eco72I	CACGTG	2 cut(s)	439, 540
Eco88I	CYCGRG	2 cut(s)	990, 1773
Eco91I	GGTNACC	1 cut(s)	469
EcoO109I	RGGNCCY	1 cut(s)	544
EcoO65I	GGTNACC	1 cut(s)	469
EcoRII	CCWGG	6 cut(s)	606, 849, 891, 968, 1485, 1807
EcoRV	GATATC	1 cut(s)	1276
EcoT14I	CCWWGG	3 cut(s)	996, 1655, 1945
EcoT38I	GRGCYC	1 cut(s)	547
EgeI	GGCGCC	1 cut(s)	1286
EheI	GGCGCC	1 cut(s)	1286
ErhI	CCWWGG	3 cut(s)	996, 1655, 1945
FalI	AAGNNNNNCTT	2 cut(s)	128, 160
FaqI	GGGAC	3 cut(s)	474, 1284, 1636
FauI	CCCGC	6 cut(s)	240, 249, 393, 555, 1111, 1182
FbaI	TGATCA	2 cut(s)	855, 1752
FblI	GTMKAC	2 cut(s)	450, 1587
Fnu4HI	GCNGC	9 cut(s)	810, 834, 1209, 1212, 1362, 1631, 1821, 1863, 2138
FokI	GGATG	8 cut(s)	391, 645, 929, 1043, 1127, 1208, 1595, 1718
FriOI	GRGCYC	1 cut(s)	547
Fsp4HI	GCNGC	9 cut(s)	810, 834, 1209, 1212, 1362, 1631, 1821, 1863, 2138
FspBI	CTAG	5 cut(s)	236, 1346, 1680, 1824, 2082
GlaI	GCGC	7 cut(s)	46, 195, 197, 321, 417, 787, 1286
GluI	GCNGC	9 cut(s)	810, 834, 1209, 1212, 1362, 1631, 1821, 1863, 2138
GsaI	CCCAGC	2 cut(s)	194, 632
GsuI	CTGGAG	2 cut(s)	359, 539
HaeII	RGCGCY	1 cut(s)	1288
HaeIII	GGCC	9 cut(s)	536, 545, 718, 974, 995, 1214, 1333, 1691, 1964
HgaI	GACGC	5 cut(s)	523, 566, 974, 1353, 2143
HhaI	GCGC	7 cut(s)	47, 196, 198, 322, 418, 788, 1287
Hin1I	GRCGYC	3 cut(s)	966, 1285, 2135
Hin6I	GCGC	7 cut(s)	45, 194, 196, 320, 416, 786, 1285
HinP1I	GCGC	7 cut(s)	45, 194, 196, 320, 416, 786, 1285
HincII	GTYRAC	2 cut(s)	451, 732
HindII	GTYRAC	2 cut(s)	451, 732
HindIII	AAGCTT	1 cut(s)	1663
HinfI	GANTC	5 cut(s)	431, 1297, 1618, 1649, 1725
Hpy166II	GTNNAC	8 cut(s)	129, 451, 703, 732, 1050, 1393, 1588, 2019
Hpy8I	GTNNAC	8 cut(s)	129, 451, 703, 732, 1050, 1393, 1588, 2019
Hpy99I	CGWCG	9 cut(s)	413, 416, 452, 565, 968, 1220, 1741, 1765, 2074
HpyAV	CCTTC	4 cut(s)	93, 394, 719, 1696
HpyCH4IV	ACGT	4 cut(s)	438, 539, 563, 1533
HpyF3I	CTNAG	3 cut(s)	837, 1439, 1721
HpySE526I	ACGT	4 cut(s)	438, 539, 563, 1533
Hsp92I	GRCGYC	3 cut(s)	966, 1285, 2135
HspAI	GCGC	7 cut(s)	45, 194, 196, 320, 416, 786, 1285
KasI	GGCGCC	1 cut(s)	1284
Kpn2I	TCCGGA	2 cut(s)	86, 2130
Ksp22I	TGATCA	2 cut(s)	855, 1752
LmnI	GCTCC	2 cut(s)	327, 343
Lsp1109I	GCAGC	5 cut(s)	1220, 1373, 1642, 1807, 1849
LweI	GCATC	5 cut(s)	413, 487, 1078, 1105, 1696
MabI	ACCWGGT	2 cut(s)	849, 1485
MaeI	CTAG	5 cut(s)	236, 1346, 1680, 1824, 2082
MaeII	ACGT	4 cut(s)	438, 539, 563, 1533
MaeIII	GTNAC	5 cut(s)	469, 1178, 1339, 1373, 1888
MbiI	CCGCTC	1 cut(s)	244
MboII	GAAGA	6 cut(s)	10, 55, 289, 1853, 1964, 2063
MhlI	GDGCHC	2 cut(s)	131, 547
MlsI	TGGCCA	2 cut(s)	1691, 1964
MluCI	AATT	6 cut(s)	940, 947, 1022, 1600, 1989, 2104
MluNI	TGGCCA	2 cut(s)	1691, 1964
Mly113I	GGCGCC	1 cut(s)	1285
MlyI	GAGTC	4 cut(s)	440, 1306, 1658, 1719
MmeI	TCCRAC	4 cut(s)	240, 1414, 1519, 1719
Mox20I	TGGCCA	2 cut(s)	1691, 1964
MroI	TCCGGA	2 cut(s)	86, 2130
MroXI	GAANNNNTTC	3 cut(s)	143, 1664, 2055
MscI	TGGCCA	2 cut(s)	1691, 1964
MseI	TTAA	5 cut(s)	669, 1164, 1418, 1611, 2188
MslI	CAYNNNNRTG	2 cut(s)	1316, 1451
Msp20I	TGGCCA	2 cut(s)	1691, 1964
MspA1I	CMGCKG	4 cut(s)	311, 388, 550, 1211
MspR9I	CCNGG	9 cut(s)	608, 851, 893, 970, 976, 1487, 1774, 1775, 1809
MvaI	CCWGG	6 cut(s)	608, 851, 893, 970, 1487, 1809
MvnI	CGCG	8 cut(s)	196, 320, 416, 418, 560, 788, 833, 1177
NarI	GGCGCC	1 cut(s)	1285
NciI	CCSGG	3 cut(s)	976, 1774, 1775
NcoI	CCATGG	1 cut(s)	1945
NmuCI	GTSAC	3 cut(s)	469, 1339, 1888
NspI	RCATGY	1 cut(s)	2041
PagI	TCATGA	1 cut(s)	1549
PaqCI	CACCTGC	2 cut(s)	1259, 1910
PasI	CCCWGGG	1 cut(s)	892
PauI	GCGCGC	1 cut(s)	194
PcsI	WCGNNNNNNNCGW	1 cut(s)	444
PdmI	GAANNNNTTC	3 cut(s)	143, 1664, 2055
PfeI	GAWTC	1 cut(s)	1618
PflFI	GACNNNGTC	1 cut(s)	2074
PflMI	CCANNNNNTGG	1 cut(s)	1192
PinAI	ACCGGT	1 cut(s)	485
PkrI	GCNGC	9 cut(s)	811, 835, 1210, 1213, 1363, 1632, 1822, 1864, 2139
Ple19I	CGATCG	1 cut(s)	1238
PleI	GAGTC	4 cut(s)	439, 1305, 1657, 1719
PluTI	GGCGCC	1 cut(s)	1288
PmaCI	CACGTG	2 cut(s)	439, 540
PmlI	CACGTG	2 cut(s)	439, 540
PpsI	GAGTC	4 cut(s)	439, 1305, 1657, 1719
Ppu21I	YACGTR	2 cut(s)	439, 540
PshBI	ATTAAT	1 cut(s)	1418
Psp1406I	AACGTT	1 cut(s)	1533
Psp6I	CCWGG	6 cut(s)	606, 849, 891, 968, 1485, 1807
PspCI	CACGTG	2 cut(s)	439, 540
PspEI	GGTNACC	1 cut(s)	469
PspFI	CCCAGC	2 cut(s)	190, 628
PspGI	CCWGG	6 cut(s)	606, 849, 891, 968, 1485, 1807
PspOMI	GGGCCC	1 cut(s)	543
PsrI	GAACNNNNNNTAC	2 cut(s)	1031, 1063
PsyI	GACNNNGTC	1 cut(s)	2074
PteI	GCGCGC	1 cut(s)	194
PvuI	CGATCG	1 cut(s)	1238
RsaI	GTAC	5 cut(s)	638, 830, 1040, 1097, 2018
RsaNI	GTAC	5 cut(s)	637, 829, 1039, 1096, 2017
RseI	CAYNNNNRTG	2 cut(s)	1316, 1451
Rsr2I	CGGWCCG	1 cut(s)	89
RsrII	CGGWCCG	1 cut(s)	89
SalI	GTCGAC	1 cut(s)	449
SaqAI	TTAA	5 cut(s)	669, 1164, 1418, 1611, 2188
SatI	GCNGC	9 cut(s)	810, 834, 1209, 1212, 1362, 1631, 1821, 1863, 2138
SchI	GAGTC	4 cut(s)	440, 1306, 1658, 1719
ScrFI	CCNGG	9 cut(s)	608, 851, 893, 970, 976, 1487, 1774, 1775, 1809
SduI	GDGCHC	2 cut(s)	131, 547
SexAI	ACCWGGT	2 cut(s)	849, 1485
SfaNI	GCATC	5 cut(s)	413, 487, 1078, 1105, 1696
SfcI	CTRYAG	1 cut(s)	823
SfiI	GGCCNNNNNGGCC	1 cut(s)	542
SfoI	GGCGCC	1 cut(s)	1286
SinI	GGWCC	7 cut(s)	89, 94, 488, 604, 896, 1000, 1078
SmaI	CCCGGG	1 cut(s)	1775
SmiMI	CAYNNNNRTG	2 cut(s)	1316, 1451
SpeI	ACTAGT	1 cut(s)	1345
Sse9I	AATT	6 cut(s)	940, 947, 1022, 1600, 1989, 2104
SspDI	GGCGCC	1 cut(s)	1284
SspMI	CTAG	5 cut(s)	236, 1346, 1680, 1824, 2082
StyD4I	CCNGG	9 cut(s)	606, 849, 891, 968, 974, 1485, 1772, 1773, 1807
StyI	CCWWGG	3 cut(s)	996, 1655, 1945
TaiI	ACGT	4 cut(s)	441, 542, 566, 1536
TaqI	TCGA	9 cut(s)	333, 450, 582, 723, 1155, 1238, 1257, 1763, 1984
TasI	AATT	6 cut(s)	940, 947, 1022, 1600, 1989, 2104
TatI	WGTACW	1 cut(s)	1038
TauI	GCSGC	4 cut(s)	812, 836, 1214, 2140
TfiI	GAWTC	1 cut(s)	1618
Tru1I	TTAA	5 cut(s)	669, 1164, 1418, 1611, 2188
Tru9I	TTAA	5 cut(s)	669, 1164, 1418, 1611, 2188
TscAI	CASTG	3 cut(s)	683, 1822, 1919
TseFI	GTSAC	3 cut(s)	469, 1339, 1888
TseI	GCWGC	5 cut(s)	1208, 1361, 1630, 1820, 1862
Tsp45I	GTSAC	3 cut(s)	469, 1339, 1888
TspDTI	ATGAA	6 cut(s)	704, 941, 1496, 1538, 1559, 2021
TspGWI	ACGGA	8 cut(s)	397, 617, 662, 833, 1233, 1307, 1428, 1712
TspMI	CCCGGG	1 cut(s)	1773
TspRI	CASTG	3 cut(s)	683, 1822, 1919
Tth111I	GACNNNGTC	1 cut(s)	2074
Van91I	CCANNNNNTGG	1 cut(s)	1192
VneI	GTGCAC	1 cut(s)	127
VpaK11BI	GGWCC	7 cut(s)	89, 94, 488, 604, 896, 1000, 1078
VspI	ATTAAT	1 cut(s)	1418
XapI	RAATTY	3 cut(s)	947, 1600, 2104
XceI	RCATGY	1 cut(s)	2041
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1193, 1309
XmaI	CCCGGG	1 cut(s)	1773
XmiI	GTMKAC	2 cut(s)	450, 1587
XmnI	GAANNNNTTC	3 cut(s)	143, 1664, 2055
XspI	CTAG	5 cut(s)	236, 1346, 1680, 1824, 2082

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.