Rroxscaffold_3G00255140

Primary amine

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Reverse (-)
49417405 .. 49422097
4693 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00255140.1

Sequence Viewer

Length: 1050 bp
ATGTTGTCCTCGAACGACTCCGGGCTTGAACCCCGTACTTTATCTGTGTATTTTCTCATGGAAACCCGAAACTTCTTCAGCCTTTTCTTTCTTTCGCTCTGCGTCGGATTTGTCCTCCTCTTCACTTGGGGTCACCTCCCTTACGCGCCTCCATACACGACTGACCTTCTCGACTGCACTACCAACTCAGCATGGTGCGCCTCCAAAAACCGCTGTCAGTCCAAACCGTCCAGCAACCTCATCAAAAACAAAAACCACCGCAGCCACAACCACGCCTCCGACACTCCCCACCACCCTCTCGACCCCCTCACAGTCCAAGAACTCAACAAAATCCGAACCATCCTCTCCTCCCACGCGCTCTTCAAGTCCTCCTCAGCCTACGCGCTCCACTCCATCGAGCTCGAAGAGCCCGACAAGCCTCTCGTCCTCCGATGGAAAAAGGGCGACCCGCTGCTACCCAGAAAGGCCTCCGTCATCGCACGTGCCTCTGGGAAGGCACACGTGCTGACCGTTGACCTGGCCACGAGCGAGGTGTCCGTACAGCAGACCGGAACCCACTTCGGCTATCCGATGCTGACCATGGAGGAAATAACCGCCGCGATCTGGGTCCCACTTTCGAACGCCAAGTTCAACCGCACGATCATCCAGCGCGGCGTTGATCTGGCGGACATTGCGTGTTTGCCGATCTCGTCGGGGTGGTTCGATGAGTACGAGGAGAACAGGAGGAGGTTGATTAAGGTACAGTGCTTCTCCACGAAGGACACTGTGAACTTTTACATGAGGCCAATCGAAGGATTGACCGTTCTCGTTGACTTGGACGCCGAACAAGTGGTGGAGATTTCCGACAAGGGTGGGAACATTCCGATACCGAAGGCCGCCAACACAGACTATAGATACTCCGCCAGCCAGGAGGTCAGTCGAGTGATTAAGCTAGTGAATCCCATTTCCATTGAGCAACCAAAAGGTCCAAGTTTTACCGTGGAGGACGGTCACTTAGTAAAATGGGCAAATTGGGAATTTCATGTAAAACCCGAAGCCGAGCCGGCGTGA

Protein Analysis

349

Amino Acids

39.18

Weight (kDa)

6.64

Isoelectric Point (pI)

39.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_amine_oxidN2 PF02727 98 - 179 7.4e-24 Copper amine oxidase, N2 domain
Cu_amine_oxidN3 PF02728 190 - 290 2.5e-24 Copper amine oxidase, N3 domain
Cu_amine_oxid PF01179 316 - 344 8.8e-06 Copper amine oxidase, enzyme domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 5 cut(s) 146, 356, 383, 599, 651
AcoI YGGCCR 1 cut(s) 519
AcsI RAATTY 1 cut(s) 1016
AcuI CTGAAG 1 cut(s) 61
AcvI CACGTG 2 cut(s) 482, 502
AcyI GRCGYC 1 cut(s) 819
AfaI GTAC 4 cut(s) 37, 540, 710, 741
AfiI CCNNNNNNNGG 2 cut(s) 603, 791
AflIII ACRYGT 1 cut(s) 499
AgsI TTSAA 3 cut(s) 29, 364, 631
AjnI CCWGG 2 cut(s) 516, 906
AloI GAACNNNNNNTCC 2 cut(s) 786, 818
AluBI AGCT 2 cut(s) 400, 931
AluI AGCT 2 cut(s) 400, 931
Alw21I GWGCWC 1 cut(s) 402
AoxI GGCC 4 cut(s) 465, 519, 782, 873
ApeKI GCWGC 2 cut(s) 261, 451
ApoI RAATTY 1 cut(s) 1016
AspLEI GCGC 5 cut(s) 148, 200, 358, 385, 651
AspS9I GGNCC 2 cut(s) 607, 965
AsuC2I CCSGG 1 cut(s) 22
AsuHPI GGTGA 1 cut(s) 125
AsuII TTCGAA 1 cut(s) 617
AvaII GGWCC 2 cut(s) 607, 965
BalI TGGCCA 1 cut(s) 521
BanII GRGCYC 2 cut(s) 402, 411
BauI CACGAG 1 cut(s) 523
BbrPI CACGTG 2 cut(s) 482, 502
Bbv12I GWGCWC 1 cut(s) 402
BbvCI CCTCAGC 1 cut(s) 373
BbvI GCAGC 2 cut(s) 273, 438
BccI CCATC 3 cut(s) 347, 401, 426
BciT130I CCWGG 2 cut(s) 518, 908
BcnI CCSGG 1 cut(s) 22
BfaI CTAG 1 cut(s) 932
BfmI CTRYAG 1 cut(s) 889
BglI GCCNNNNNGGC 1 cut(s) 1043
BisI GCNGC 5 cut(s) 262, 452, 597, 652, 876
BlsI GCNGC 5 cut(s) 263, 453, 598, 653, 877
Bme1390I CCNGG 3 cut(s) 22, 518, 908
Bme18I GGWCC 2 cut(s) 607, 965
BmgT120I GGNCC 2 cut(s) 607, 965
BmiI GGNNCC 3 cut(s) 553, 608, 609
BmrFI CCNGG 3 cut(s) 22, 518, 908
BmsI GCATC 1 cut(s) 561
Bpu10I CCTNAGC 1 cut(s) 373
Bpu14I TTCGAA 1 cut(s) 617
BpuMI CCSGG 1 cut(s) 22
BsaAI YACGTR 2 cut(s) 482, 502
BsaHI GRCGYC 1 cut(s) 819
BsaJI CCNNGG 2 cut(s) 579, 978
BsaWI WCCGGW 1 cut(s) 548
BsaXI ACNNNNNCTCC 2 cut(s) 260, 290
Bsc4I CCNNNNNNNGG 2 cut(s) 603, 791
Bse118I RCCGGY 1 cut(s) 1042
Bse3DI GCAATG 1 cut(s) 669
BseBI CCWGG 2 cut(s) 518, 908
BseDI CCNNGG 2 cut(s) 579, 978
BseGI GGATG 2 cut(s) 339, 642
BseLI CCNNNNNNNGG 2 cut(s) 603, 791
BseMI GCAATG 1 cut(s) 669
BseMII CTCAG 2 cut(s) 201, 387
BseRI GAGGAG 5 cut(s) 107, 337, 361, 728, 739
BseXI GCAGC 2 cut(s) 273, 438
BsgI GTGCAG 1 cut(s) 160
Bsh1236I CGCG 5 cut(s) 146, 356, 383, 599, 651
BshFI GGCC 4 cut(s) 467, 521, 784, 875
BsiHKAI GWGCWC 1 cut(s) 402
BsiSI CCGG 3 cut(s) 21, 549, 1043
BslFI GGGAC 1 cut(s) 593
BslI CCNNNNNNNGG 2 cut(s) 603, 791
BsmFI GGGAC 1 cut(s) 593
BsnI GGCC 4 cut(s) 467, 521, 784, 875
Bsp119I TTCGAA 1 cut(s) 617
Bsp1286I GDGCHC 2 cut(s) 402, 411
Bsp143I GATC 4 cut(s) 600, 639, 658, 684
Bsp19I CCATGG 1 cut(s) 579
BspANI GGCC 4 cut(s) 467, 521, 784, 875
BspCNI CTCAG 2 cut(s) 200, 386
BspFNI CGCG 5 cut(s) 146, 356, 383, 599, 651
BspLI GGNNCC 3 cut(s) 553, 608, 609
BspQI GCTCTTC 2 cut(s) 365, 399
BspT104I TTCGAA 1 cut(s) 617
BsrDI GCAATG 1 cut(s) 669
BsrFI RCCGGY 1 cut(s) 1042
BssAI RCCGGY 1 cut(s) 1042
BssECI CCNNGG 2 cut(s) 579, 978
BssMI GATC 4 cut(s) 600, 639, 658, 684
BssNI GRCGYC 1 cut(s) 819
BssSI CACGAG 1 cut(s) 523
BssT1I CCWWGG 1 cut(s) 579
Bst2BI CACGAG 1 cut(s) 523
Bst2UI CCWGG 2 cut(s) 518, 908
Bst4CI ACNGT 8 cut(s) 228, 313, 511, 744, 766, 802, 979, 989
Bst6I CTCTTC 3 cut(s) 125, 365, 399
BstACI GRCGYC 1 cut(s) 819
BstBAI YACGTR 2 cut(s) 482, 502
BstBI TTCGAA 1 cut(s) 617
BstC8I GCNNGC 2 cut(s) 904, 1044
BstDEI CTNAG 3 cut(s) 187, 373, 994
BstDSI CCRYGG 2 cut(s) 579, 978
BstEII GGTNACC 1 cut(s) 131
BstF5I GGATG 2 cut(s) 339, 642
BstFNI CGCG 5 cut(s) 146, 356, 383, 599, 651
BstHHI GCGC 5 cut(s) 148, 200, 358, 385, 651
BstKTI GATC 4 cut(s) 603, 642, 661, 687
BstMBI GATC 4 cut(s) 600, 639, 658, 684
BstMWI GCNNNNNNNGC 5 cut(s) 197, 406, 415, 671, 1043
BstNI CCWGG 2 cut(s) 518, 908
BstPI GGTNACC 1 cut(s) 131
BstSCI CCNGG 3 cut(s) 20, 516, 906
BstSFI CTRYAG 1 cut(s) 889
BstUI CGCG 5 cut(s) 146, 356, 383, 599, 651
BstV1I GCAGC 2 cut(s) 273, 438
BsuRI GGCC 4 cut(s) 467, 521, 784, 875
BtgI CCRYGG 2 cut(s) 579, 978
BtgZI GCGATG 1 cut(s) 460
BtsCI GGATG 2 cut(s) 339, 642
BtsIMutI CAGTG 2 cut(s) 749, 762
Cac8I GCNNGC 2 cut(s) 904, 1044
CfoI GCGC 5 cut(s) 148, 200, 358, 385, 651
Cfr10I RCCGGY 1 cut(s) 1042
Cfr13I GGNCC 2 cut(s) 607, 965
CseI GACGC 2 cut(s) 91, 827
Csp6I GTAC 4 cut(s) 36, 539, 709, 740
CviAII CATG 5 cut(s) 58, 192, 580, 778, 1022
CviQI GTAC 4 cut(s) 36, 539, 709, 740
DdeI CTNAG 3 cut(s) 187, 373, 994
DpnI GATC 4 cut(s) 602, 641, 660, 686
DpnII GATC 4 cut(s) 600, 639, 658, 684
EaeI YGGCCR 1 cut(s) 519
Eam1104I CTCTTC 3 cut(s) 125, 365, 399
EarI CTCTTC 3 cut(s) 125, 365, 399
EciI GGCGGA 2 cut(s) 680, 889
Ecl136II GAGCTC 1 cut(s) 400
Eco130I CCWWGG 1 cut(s) 579
Eco147I AGGCCT 1 cut(s) 467
Eco24I GRGCYC 2 cut(s) 402, 411
Eco47I GGWCC 2 cut(s) 607, 965
Eco53kI GAGCTC 1 cut(s) 400
Eco57I CTGAAG 1 cut(s) 61
Eco72I CACGTG 2 cut(s) 482, 502
Eco91I GGTNACC 1 cut(s) 131
EcoICRI GAGCTC 1 cut(s) 400
EcoO109I RGGNCCY 1 cut(s) 607
EcoO65I GGTNACC 1 cut(s) 131
EcoRII CCWGG 2 cut(s) 516, 906
EcoT14I CCWWGG 1 cut(s) 579
EcoT38I GRGCYC 2 cut(s) 402, 411
ErhI CCWWGG 1 cut(s) 579
FaeI CATG 5 cut(s) 61, 195, 583, 781, 1025
FaiI YATR 7 cut(s) 59, 154, 193, 581, 779, 891, 1023
FaqI GGGAC 1 cut(s) 593
FatI CATG 5 cut(s) 57, 191, 579, 777, 1021
FauI CCCGC 1 cut(s) 456
Fnu4HI GCNGC 5 cut(s) 262, 452, 597, 652, 876
FokI GGATG 2 cut(s) 326, 629
FriOI GRGCYC 2 cut(s) 402, 411
Fsp4HI GCNGC 5 cut(s) 262, 452, 597, 652, 876
FspBI CTAG 1 cut(s) 932
GlaI GCGC 5 cut(s) 147, 199, 357, 384, 650
GluI GCNGC 5 cut(s) 262, 452, 597, 652, 876
HaeIII GGCC 4 cut(s) 467, 521, 784, 875
HapII CCGG 3 cut(s) 21, 549, 1043
HgaI GACGC 2 cut(s) 91, 827
HhaI GCGC 5 cut(s) 148, 200, 358, 385, 651
Hin1I GRCGYC 1 cut(s) 819
Hin1II CATG 5 cut(s) 61, 195, 583, 781, 1025
Hin6I GCGC 5 cut(s) 146, 198, 356, 383, 649
HinP1I GCGC 5 cut(s) 146, 198, 356, 383, 649
HincII GTYRAC 2 cut(s) 514, 811
HindII GTYRAC 2 cut(s) 514, 811
HinfI GANTC 2 cut(s) 17, 937
HpaII CCGG 3 cut(s) 21, 549, 1043
HphI GGTGA 1 cut(s) 125
Hpy166II GTNNAC 3 cut(s) 514, 769, 811
Hpy188I TCNGA 7 cut(s) 107, 280, 335, 431, 570, 844, 864
Hpy188III TCNNGA 2 cut(s) 170, 299
Hpy8I GTNNAC 3 cut(s) 514, 769, 811
Hpy99I CGWCG 2 cut(s) 107, 694
HpyAV CCTTC 5 cut(s) 176, 487, 751, 785, 865
HpyCH4III ACNGT 8 cut(s) 228, 313, 511, 744, 766, 802, 979, 989
HpyCH4IV ACGT 2 cut(s) 481, 501
HpyCH4V TGCA 1 cut(s) 177
HpyF10VI GCNNNNNNNGC 5 cut(s) 197, 406, 415, 671, 1043
HpyF3I CTNAG 3 cut(s) 187, 373, 994
HpySE526I ACGT 2 cut(s) 481, 501
Hsp92I GRCGYC 1 cut(s) 819
Hsp92II CATG 5 cut(s) 61, 195, 583, 781, 1025
HspAI GCGC 5 cut(s) 146, 198, 356, 383, 649
KflI GGGWCCC 1 cut(s) 607
KroI GCCGGC 1 cut(s) 1042
KroNI GCCGGC 1 cut(s) 1044
Kzo9I GATC 4 cut(s) 600, 639, 658, 684
LguI GCTCTTC 2 cut(s) 365, 399
LmnI GCTCC 1 cut(s) 390
Lsp1109I GCAGC 2 cut(s) 273, 438
LweI GCATC 1 cut(s) 561
MaeI CTAG 1 cut(s) 932
MaeII ACGT 2 cut(s) 481, 501
MaeIII GTNAC 2 cut(s) 131, 989
MalI GATC 4 cut(s) 602, 641, 660, 686
MboI GATC 4 cut(s) 600, 639, 658, 684
MboII GAAGA 4 cut(s) 67, 112, 352, 416
MhlI GDGCHC 2 cut(s) 402, 411
MlsI TGGCCA 1 cut(s) 521
MluCI AATT 2 cut(s) 1009, 1016
MluNI TGGCCA 1 cut(s) 521
MlyI GAGTC 1 cut(s) 11
MmeI TCCRAC 3 cut(s) 85, 303, 867
Mox20I TGGCCA 1 cut(s) 521
MroNI GCCGGC 1 cut(s) 1042
MscI TGGCCA 1 cut(s) 521
MseI TTAA 2 cut(s) 735, 927
Msp20I TGGCCA 1 cut(s) 521
MspA1I CMGCKG 2 cut(s) 213, 451
MspI CCGG 3 cut(s) 21, 549, 1043
MspR9I CCNGG 3 cut(s) 22, 518, 908
MvaI CCWGG 2 cut(s) 518, 908
MvnI CGCG 5 cut(s) 146, 356, 383, 599, 651
MwoI GCNNNNNNNGC 5 cut(s) 197, 406, 415, 671, 1043
NaeI GCCGGC 1 cut(s) 1044
NciI CCSGG 1 cut(s) 22
NcoI CCATGG 1 cut(s) 579
NdeII GATC 4 cut(s) 600, 639, 658, 684
NgoMIV GCCGGC 1 cut(s) 1042
NlaIII CATG 5 cut(s) 61, 195, 583, 781, 1025
NlaIV GGNNCC 3 cut(s) 553, 608, 609
NmuCI GTSAC 2 cut(s) 131, 989
NspV TTCGAA 1 cut(s) 617
PceI AGGCCT 1 cut(s) 467
PciSI GCTCTTC 2 cut(s) 365, 399
PcsI WCGNNNNNNNCGW 3 cut(s) 408, 507, 708
PdiI GCCGGC 1 cut(s) 1044
PfeI GAWTC 1 cut(s) 937
PkrI GCNGC 5 cut(s) 263, 453, 598, 653, 877
PleI GAGTC 1 cut(s) 11
PmaCI CACGTG 2 cut(s) 482, 502
PmlI CACGTG 2 cut(s) 482, 502
PpsI GAGTC 1 cut(s) 11
Ppu21I YACGTR 2 cut(s) 482, 502
PpuMI RGGWCCY 1 cut(s) 607
Psp124BI GAGCTC 1 cut(s) 402
Psp5II RGGWCCY 1 cut(s) 607
Psp6I CCWGG 2 cut(s) 516, 906
PspCI CACGTG 2 cut(s) 482, 502
PspEI GGTNACC 1 cut(s) 131
PspGI CCWGG 2 cut(s) 516, 906
PspN4I GGNNCC 3 cut(s) 553, 608, 609
PspPI GGNCC 2 cut(s) 607, 965
PspPPI RGGWCCY 1 cut(s) 607
RsaI GTAC 4 cut(s) 37, 540, 710, 741
RsaNI GTAC 4 cut(s) 36, 539, 709, 740
SacI GAGCTC 1 cut(s) 402
SapI GCTCTTC 2 cut(s) 365, 399
SaqAI TTAA 2 cut(s) 735, 927
SatI GCNGC 5 cut(s) 262, 452, 597, 652, 876
Sau3AI GATC 4 cut(s) 600, 639, 658, 684
Sau96I GGNCC 2 cut(s) 607, 965
SchI GAGTC 1 cut(s) 11
ScrFI CCNGG 3 cut(s) 22, 518, 908
SduI GDGCHC 2 cut(s) 402, 411
SfaNI GCATC 1 cut(s) 561
SfcI CTRYAG 1 cut(s) 889
SfuI TTCGAA 1 cut(s) 617
SinI GGWCC 2 cut(s) 607, 965
Sse9I AATT 2 cut(s) 1009, 1016
SseBI AGGCCT 1 cut(s) 467
SspMI CTAG 1 cut(s) 932
SstI GAGCTC 1 cut(s) 402
StuI AGGCCT 1 cut(s) 467
StyD4I CCNGG 3 cut(s) 20, 516, 906
StyI CCWWGG 1 cut(s) 579
TaaI ACNGT 8 cut(s) 228, 313, 511, 744, 766, 802, 979, 989
TaiI ACGT 2 cut(s) 484, 504
TaqI TCGA 9 cut(s) 11, 171, 300, 396, 402, 617, 702, 789, 919
TasI AATT 2 cut(s) 1009, 1016
TauI GCSGC 3 cut(s) 599, 654, 878
TfiI GAWTC 1 cut(s) 937
Tru1I TTAA 2 cut(s) 735, 927
Tru9I TTAA 2 cut(s) 735, 927
TscAI CASTG 2 cut(s) 749, 769
TseFI GTSAC 2 cut(s) 131, 989
TseI GCWGC 2 cut(s) 261, 451
Tsp45I GTSAC 2 cut(s) 131, 989
TspDTI ATGAA 1 cut(s) 1010
TspGWI ACGGA 2 cut(s) 460, 526
TspRI CASTG 2 cut(s) 749, 769
VpaK11BI GGWCC 2 cut(s) 607, 965
XapI RAATTY 1 cut(s) 1016
XspI CTAG 1 cut(s) 932
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.