Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0002010

Physical Location & Seq

Genomic Coordinates Reverse (-)

9281526 .. 9283934

Gene Structure 2409 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G078700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGGCAACAAGTCGGATAGGGGCCGGTCAGGGTGAAGATACCCTAGCCGTCTGGGACCGGCCAATCGAGAACAAGGATATTGTTCTCTGGTACACATTAGGGTTTCATCACATACCATGTCAAGAAGACTTCCCTATAATGCCGACGGTGTCGTCTAGCTTTGACCTAAAGCCTGTGAATTTCTTTGAGAGCAACCCCATACTTCGAACTCCACCTAATGTTGAGACAGATCTGCCTGTTTGCGTCGCTGCTGCTTCAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001505 GO:0006807 GO:0006809 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009987 GO:0010033 GO:0017144 GO:0023052 GO:0032870 GO:0033993 GO:0034641 GO:0042133 GO:0042136 GO:0042221 GO:0044237 GO:0044249 GO:0044271 GO:0046209 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0065008 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0072593 GO:0097305 GO:0097306 GO:1901700 GO:1901701 GO:1903409 GO:2001057

KEGG Pathways

Metabolic & Signaling

ko00260 ko00350 ko00360 ko00410 ko00950 ko00960 ko01100 ko01110 map00260 map00350 map00360 map00410 map00950 map00960 map01100 map01110

Pfam Domains

Protein Families

Cu_amine_oxid Cu_amine_oxidN2 Cu_amine_oxidN3

Protein Analysis

88

Amino Acids

9.59

Weight (kDa)

4.49

Isoelectric Point (pI)

52.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12270 AT4G12280 AT4G12290 AT4G12290
fragaria_vesca	FvH4_5g00610 FvH4_5g00610 FvH4_5g00610 FvH4_5g00610 FvH4_5g00610
malus_domestica	MD02G1257400.v1.1 MD06G1075500.v1.1 MD16G1192400.v1.1
prunus_persica	Prupe.5G078700_v2.0.a1 Prupe.5G078900_v2.0.a1
pyrus_communis	pycom09g07970 pycom13g04890 pycom15g15380 pycom15g15390
rosa_chinensis	RchiOBHm_Chr5g0060271 RchiOBHm_Chr7g0201651 RchiOBHm_Chr7g0201661
rosa_laevigata	RLG00000003658
rosa_multiflora	Rmu_sc0001512.1_g000015 Rmu_sc0004811.1_g000006 Rmu_sc0004811.1_g000008 Rmu_sc0004811.1_g000009 Rmu_sc0004811.1_g000010 Rmu_sc0004811.1_g000011
rosa_roxburghii	Rroxscaffold_3G00255130 Rroxscaffold_3G00255140 Rroxscaffold_3G00255150 Rroxscaffold_6G00396720
rosa_rugosa	Rorug07G0065300 Rorug07G0065300
rosa_samantha	Rh7AG192300 Rh7AG192500 Rh7BG194400 Rh7BG194500 Rh7BG194600 Rh7CG203500 Rh7CG203600 Rh7CG203700 Rh7DG197700
rosa_wichuraiana	Rw7G016860 Rw7G016870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	151
AcoI	YGGCCR	1 cut(s)	59
AcsI	RAATTY	1 cut(s)	178
AcuI	CTGAAG	1 cut(s)	240
AfaI	GTAC	1 cut(s)	92
AluBI	AGCT	2 cut(s)	159, 260
AluI	AGCT	2 cut(s)	159, 260
Alw26I	GTCTC	1 cut(s)	218
AoxI	GGCC	2 cut(s)	21, 59
ApeKI	GCWGC	2 cut(s)	248, 251
ApoI	RAATTY	1 cut(s)	178
AspS9I	GGNCC	2 cut(s)	21, 55
AsuHPI	GGTGA	1 cut(s)	44
AsuII	TTCGAA	1 cut(s)	205
AvaII	GGWCC	1 cut(s)	55
BbsI	GAAGAC	1 cut(s)	132
BbvI	GCAGC	2 cut(s)	235, 238
BceAI	ACGGC	1 cut(s)	32
BcoDI	GTCTC	1 cut(s)	218
BfaI	CTAG	2 cut(s)	44, 156
BglII	AGATCT	1 cut(s)	229
BisI	GCNGC	2 cut(s)	249, 252
BlsI	GCNGC	2 cut(s)	250, 253
Bme18I	GGWCC	1 cut(s)	55
BmgT120I	GGNCC	2 cut(s)	21, 55
BmiI	GGNNCC	2 cut(s)	22, 56
BpiI	GAAGAC	1 cut(s)	132
Bpu14I	TTCGAA	1 cut(s)	205
Bse118I	RCCGGY	2 cut(s)	23, 57
BseXI	GCAGC	2 cut(s)	235, 238
BshFI	GGCC	2 cut(s)	23, 61
BsiSI	CCGG	2 cut(s)	24, 58
BslFI	GGGAC	1 cut(s)	68
BsmAI	GTCTC	1 cut(s)	218
BsmFI	GGGAC	1 cut(s)	68
BsnI	GGCC	2 cut(s)	23, 61
Bsp119I	TTCGAA	1 cut(s)	205
Bsp143I	GATC	1 cut(s)	229
BspANI	GGCC	2 cut(s)	23, 61
BspLI	GGNNCC	2 cut(s)	22, 56
BspT104I	TTCGAA	1 cut(s)	205
BsrFI	RCCGGY	2 cut(s)	23, 57
BssAI	RCCGGY	2 cut(s)	23, 57
BssMI	GATC	1 cut(s)	229
Bst4CI	ACNGT	1 cut(s)	148
BstBI	TTCGAA	1 cut(s)	205
BstKTI	GATC	1 cut(s)	232
BstMAI	GTCTC	1 cut(s)	218
BstMBI	GATC	1 cut(s)	229
BstMWI	GCNNNNNNNGC	1 cut(s)	257
BstV1I	GCAGC	2 cut(s)	235, 238
BstV2I	GAAGAC	1 cut(s)	132
BstX2I	RGATCY	1 cut(s)	229
BstYI	RGATCY	1 cut(s)	229
BsuRI	GGCC	2 cut(s)	23, 61
Cfr10I	RCCGGY	2 cut(s)	23, 57
Cfr13I	GGNCC	2 cut(s)	21, 55
CseI	GACGC	1 cut(s)	232
Csp6I	GTAC	1 cut(s)	91
CviAII	CATG	1 cut(s)	117
CviJI	RGCY	6 cut(s)	23, 47, 61, 159, 172, 260
CviKI_1	RGCY	6 cut(s)	23, 47, 61, 159, 172, 260
CviQI	GTAC	1 cut(s)	91
DpnI	GATC	1 cut(s)	231
DpnII	GATC	1 cut(s)	229
DrdI	GACNNNNNNGTC	1 cut(s)	151
DseDI	GACNNNNNNGTC	1 cut(s)	151
EaeI	YGGCCR	1 cut(s)	59
Eco47I	GGWCC	1 cut(s)	55
Eco57I	CTGAAG	1 cut(s)	240
FaeI	CATG	1 cut(s)	120
FaiI	YATR	4 cut(s)	113, 118, 137, 200
FaqI	GGGAC	1 cut(s)	68
FatI	CATG	1 cut(s)	116
Fnu4HI	GCNGC	2 cut(s)	249, 252
Fsp4HI	GCNGC	2 cut(s)	249, 252
FspBI	CTAG	2 cut(s)	44, 156
GluI	GCNGC	2 cut(s)	249, 252
HaeIII	GGCC	2 cut(s)	23, 61
HapII	CCGG	2 cut(s)	24, 58
HgaI	GACGC	1 cut(s)	232
Hin1II	CATG	1 cut(s)	120
HpaII	CCGG	2 cut(s)	24, 58
HphI	GGTGA	1 cut(s)	44
Hpy166II	GTNNAC	1 cut(s)	93
Hpy188I	TCNGA	1 cut(s)	15
Hpy188III	TCNNGA	2 cut(s)	67, 122
Hpy8I	GTNNAC	1 cut(s)	93
Hpy99I	CGWCG	2 cut(s)	148, 248
HpyCH4III	ACNGT	1 cut(s)	148
HpyF10VI	GCNNNNNNNGC	1 cut(s)	257
Hsp92II	CATG	1 cut(s)	120
Kzo9I	GATC	1 cut(s)	229
LpnPI	CCDG	7 cut(s)	14, 37, 37, 71, 73, 186, 249
Lsp1109I	GCAGC	2 cut(s)	235, 238
MaeI	CTAG	2 cut(s)	44, 156
MalI	GATC	1 cut(s)	231
MboI	GATC	1 cut(s)	229
MboII	GAAGA	2 cut(s)	47, 137
MflI	RGATCY	1 cut(s)	229
MluCI	AATT	1 cut(s)	178
MseI	TTAA	1 cut(s)	262
MspI	CCGG	2 cut(s)	24, 58
MwoI	GCNNNNNNNGC	1 cut(s)	257
NdeII	GATC	1 cut(s)	229
NlaIII	CATG	1 cut(s)	120
NlaIV	GGNNCC	2 cut(s)	22, 56
NspV	TTCGAA	1 cut(s)	205
PflFI	GACNNNGTC	1 cut(s)	148
PkrI	GCNGC	2 cut(s)	250, 253
PspN4I	GGNNCC	2 cut(s)	22, 56
PspPI	GGNCC	2 cut(s)	21, 55
PsuI	RGATCY	1 cut(s)	229
PsyI	GACNNNGTC	1 cut(s)	148
RsaI	GTAC	1 cut(s)	92
RsaNI	GTAC	1 cut(s)	91
SaqAI	TTAA	1 cut(s)	262
SatI	GCNGC	2 cut(s)	249, 252
Sau3AI	GATC	1 cut(s)	229
Sau96I	GGNCC	2 cut(s)	21, 55
SetI	ASST	4 cut(s)	161, 168, 217, 262
SfuI	TTCGAA	1 cut(s)	205
SinI	GGWCC	1 cut(s)	55
Sse9I	AATT	1 cut(s)	178
SspMI	CTAG	2 cut(s)	44, 156
TaaI	ACNGT	1 cut(s)	148
TaqI	TCGA	2 cut(s)	66, 205
TasI	AATT	1 cut(s)	178
Tru1I	TTAA	1 cut(s)	262
Tru9I	TTAA	1 cut(s)	262
TseI	GCWGC	2 cut(s)	248, 251
TspDTI	ATGAA	1 cut(s)	95
Tth111I	GACNNNGTC	1 cut(s)	148
VpaK11BI	GGWCC	1 cut(s)	55
XapI	RAATTY	1 cut(s)	178
XspI	CTAG	2 cut(s)	44, 156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.