AT4G14230

domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0002295
Physical Location & Seq
Reverse (-)
8200334 .. 8203251
2918 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G14230.1

Sequence Viewer

Length: 1488 bp
ATGCATCCGATTAATGCGGTGGTTGCGGCGAGGATGTTAGCCGGAATCAGTCAATCTAACGCCTTACAAAGCGAGGCGATTCCGTTTGGATCGCTTGAGTGGATCACTTACGCCGGAATCTCTTGTTTCCTTGTTCTCTTCGCCGGAATTATGTCTGGTCTCACTTTAGGGCTTATGTCTCTCGGTCTCGTTGAGCTCGAGATTCTCCAACGGAGTGGTACTCCAAAAGAGAAGAAACAATCTGCTGCGATTTTTCCGGTTGTTCAGAAACAGCATCAGCTTTTAGTGACTCTGCTTCTGTTTAATGCTCTTGCTATGGAGGGGCTTCCTATATACTTGGATAAGATATTCAATGAGTATGTTGCTATTATTCTATCCGTCACTTTCGTTCTATTCGTTGGAGAGGTTATTCCTCAAGCTATATGTACTAGATATGGACTAGCAGTGGGAGCTAATTTGGTCTGGCTTGTTCGTATCTTAATGGTTCTATCGTACCCGATATCTTTTCCTATTGCAAAGATGTTGGATTGGGTGTTGGGACACAATGACCCTTTATTTAGGCGAGCTCAGTTAAAAGCTCTTGTGTCCATTCACGGTGAAGCTGCTGGAAAGGGAGGTGAACTTACACATGATGAGACTACAATTATAAGTGGAGCACTTGATTTGACTGAAAAGACCGCTCAAGAAGCCATGACACCAATTGAATCAACGTTTTCCTTGGATGTAAATTCAAAGTTGGACCGGGAAGCTATGGATAAGATTCAAGCACGAGGTCATAGCCGCGTTCCTGTCTACTCCGATAATCCAAAAAATGTTATTGGACTTCTCTTGGTGAAGAGTCTCCTTACAGTTCGCCCTGAAACAGGGACTCTTGTCAGCGCAGTTGGTATACGCCGAATTCCAAGGGTTCCGGCTAATATGCCTCTGTATGATATTCTGAATGAGTTTCAAAAAGGGAGCAGTCACATGGCTGCAGTTGTGAAGGTTAAGGGGAAAAGCAAAGGTCATCCTTCAACTTTGCATGAAGAAAATAGCGGTGAAAGCAACGTCTCAAGTAACAACTCCGAGTTGACTGCACCTCTTTTACTAAAGCGAGAAGGAAACCACGACAGTGTCATTGTCCGCATCGACAAGGCTAATGGACAATCGTTCATCAGCGAGGCCGGCAGACAGGGGTTCTCACATACTTCAGAGGAGATTGAGGATGGAGACGTAATTGGTATCATCACATTAGAAGATGTGTTTGAAGAACTTTTGCAGGAGGAGATTGTGGATGAAACAGATGAGTATATAGACGTGCATAAAAGGATTCGTGTGGCAACTGTAGCAGCAGTGGCCATTTCATCATTAGCGAGAGCACCTTCAGGCCGGAGGTTACTTGGCCCAAAAGGAAGTGGAGGACCAAAAACGCCAAAGGCATCTTCTACTCCCAAACCGGATGATAAACTGATGGGAACCATGACCGGTCCTCCTCAAGGAAACAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF21

Protein Analysis

495

Amino Acids

53.49

Weight (kDa)

6.1

Isoelectric Point (pI)

42.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CNNM PF01595 40 - 209 1.4e-32 Cyclin M transmembrane N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 647
AccBSI CCGCTC 1 cut(s) 680
AccI GTMKAC 2 cut(s) 792, 889
AccII CGCG 1 cut(s) 783
AciI CCGC 6 cut(s) 17, 26, 678, 781, 1035, 1123
AclI AACGTT 1 cut(s) 710
AclWI GGATC 2 cut(s) 97, 110
AcoI YGGCCR 1 cut(s) 1335
AcsI RAATTY 2 cut(s) 727, 897
AcuI CTGAAG 2 cut(s) 1173, 1347
AfaI GTAC 3 cut(s) 220, 427, 494
AfiI CCNNNNNNNGG 2 cut(s) 863, 1475
AgeI ACCGGT 1 cut(s) 1463
AgsI TTSAA 7 cut(s) 352, 704, 732, 764, 950, 1014, 1247
AjiI CACGTC 1 cut(s) 1297
AjuI GAANNNNNNNTTGG 2 cut(s) 1405, 1437
AleI CACNNNNGTG 1 cut(s) 1110
AluBI AGCT 8 cut(s) 196, 280, 419, 452, 566, 578, 602, 749
AluI AGCT 8 cut(s) 196, 280, 419, 452, 566, 578, 602, 749
Alw21I GWGCWC 4 cut(s) 198, 568, 658, 1360
Alw26I GTCTC 7 cut(s) 164, 183, 191, 629, 845, 1054, 1203
AlwI GGATC 2 cut(s) 97, 110
Ama87I CYCGRG 1 cut(s) 197
AoxI GGCC 4 cut(s) 1161, 1335, 1366, 1381
ApeKI GCWGC 4 cut(s) 245, 602, 971, 1328
ApoI RAATTY 2 cut(s) 727, 897
AseI ATTAAT 1 cut(s) 12
AsiGI ACCGGT 1 cut(s) 1463
AspLEI GCGC 1 cut(s) 881
AspS9I GGNCC 4 cut(s) 739, 1382, 1400, 1466
AsuC2I CCSGG 1 cut(s) 743
AsuHPI GGTGA 4 cut(s) 608, 629, 844, 1049
AvaI CYCGRG 1 cut(s) 197
AvaII GGWCC 3 cut(s) 739, 1400, 1466
BalI TGGCCA 1 cut(s) 1337
BanII GRGCYC 2 cut(s) 198, 568
BauI CACGAG 1 cut(s) 768
Bbv12I GWGCWC 4 cut(s) 198, 568, 658, 1360
BbvI GCAGC 4 cut(s) 232, 589, 958, 1340
BccI CCATC 2 cut(s) 1199, 1444
BcgI CGANNNNNNTGC 2 cut(s) 1055, 1089
BcnI CCSGG 1 cut(s) 743
BcoDI GTCTC 7 cut(s) 164, 183, 191, 629, 845, 1054, 1203
BfaI CTAG 2 cut(s) 429, 440
BfmI CTRYAG 2 cut(s) 972, 1323
BisI GCNGC 6 cut(s) 27, 246, 603, 781, 972, 1329
BlsI GCNGC 6 cut(s) 28, 247, 604, 782, 973, 1330
Bme1390I CCNGG 1 cut(s) 743
Bme18I GGWCC 3 cut(s) 739, 1400, 1466
BmeT110I CYCGRG 1 cut(s) 197
BmgBI CACGTC 1 cut(s) 1297
BmgT120I GGNCC 4 cut(s) 739, 1382, 1400, 1466
BmiI GGNNCC 2 cut(s) 909, 1456
BmrFI CCNGG 1 cut(s) 743
BmsI GCATC 4 cut(s) 13, 283, 1134, 1427
BoxI GACNNNNGTC 1 cut(s) 872
BplI GAGNNNNNCTC 2 cut(s) 205, 237
BpuEI CTTGAG 5 cut(s) 116, 399, 666, 1036, 1458
BpuMI CCSGG 1 cut(s) 743
BsaI GGTCTC 2 cut(s) 164, 191
BsaJI CCNNGG 2 cut(s) 717, 902
BsaWI WCCGGW 3 cut(s) 256, 1435, 1463
BsaXI ACNNNNNCTCC 2 cut(s) 1453, 1483
Bsc4I CCNNNNNNNGG 2 cut(s) 863, 1475
Bse118I RCCGGY 2 cut(s) 1163, 1463
BseDI CCNNGG 2 cut(s) 717, 902
BseGI GGATG 7 cut(s) 4, 39, 727, 1006, 1210, 1279, 1444
BseLI CCNNNNNNNGG 2 cut(s) 863, 1475
BseMII CTCAG 1 cut(s) 581
BseRI GAGGAG 3 cut(s) 1208, 1277, 1461
BseXI GCAGC 4 cut(s) 232, 589, 958, 1340
BsgI GTGCAG 1 cut(s) 1059
Bsh1236I CGCG 1 cut(s) 783
BshFI GGCC 4 cut(s) 1163, 1337, 1368, 1383
BshTI ACCGGT 1 cut(s) 1463
BsiHKAI GWGCWC 4 cut(s) 198, 568, 658, 1360
BsiHKCI CYCGRG 1 cut(s) 197
BslFI GGGAC 2 cut(s) 552, 880
BslI CCNNNNNNNGG 2 cut(s) 863, 1475
BsmAI GTCTC 7 cut(s) 164, 183, 191, 629, 845, 1054, 1203
BsmBI CGTCTC 2 cut(s) 1054, 1203
BsmFI GGGAC 2 cut(s) 552, 880
BsnI GGCC 4 cut(s) 1163, 1337, 1368, 1383
Bso31I GGTCTC 2 cut(s) 164, 191
BsoBI CYCGRG 1 cut(s) 197
Bsp1286I GDGCHC 4 cut(s) 198, 568, 658, 1360
Bsp143I GATC 2 cut(s) 89, 102
BspACI CCGC 6 cut(s) 17, 26, 678, 781, 1035, 1123
BspANI GGCC 4 cut(s) 1163, 1337, 1368, 1383
BspCNI CTCAG 1 cut(s) 580
BspFNI CGCG 1 cut(s) 783
BspLI GGNNCC 2 cut(s) 909, 1456
BspMAI CTGCAG 1 cut(s) 976
BspPI GGATC 2 cut(s) 97, 110
BspTNI GGTCTC 2 cut(s) 164, 191
BsrBI CCGCTC 1 cut(s) 680
BsrFI RCCGGY 2 cut(s) 1163, 1463
BssAI RCCGGY 2 cut(s) 1163, 1463
BssECI CCNNGG 2 cut(s) 717, 902
BssMI GATC 2 cut(s) 89, 102
BssNAI GTATAC 1 cut(s) 890
BssSI CACGAG 1 cut(s) 768
BssT1I CCWWGG 2 cut(s) 717, 902
Bst1107I GTATAC 1 cut(s) 890
Bst2BI CACGAG 1 cut(s) 768
Bst4CI ACNGT 4 cut(s) 596, 850, 1112, 1324
Bst6I CTCTTC 2 cut(s) 143, 830
BstC8I GCNNGC 2 cut(s) 564, 1165
BstDEI CTNAG 1 cut(s) 567
BstENI CCTNNNNNAGG 2 cut(s) 861, 1473
BstF5I GGATG 7 cut(s) 4, 39, 727, 1006, 1210, 1279, 1444
BstFNI CGCG 1 cut(s) 783
BstHHI GCGC 1 cut(s) 881
BstKTI GATC 2 cut(s) 92, 105
BstMAI GTCTC 7 cut(s) 164, 183, 191, 629, 845, 1054, 1203
BstMBI GATC 2 cut(s) 89, 102
BstMWI GCNNNNNNNGC 7 cut(s) 23, 449, 686, 1041, 1164, 1325, 1334
BstPAI GACNNNNGTC 1 cut(s) 872
BstSCI CCNGG 1 cut(s) 741
BstSFI CTRYAG 2 cut(s) 972, 1323
BstUI CGCG 1 cut(s) 783
BstV1I GCAGC 4 cut(s) 232, 589, 958, 1340
BstXI CCANNNNNNTGG 1 cut(s) 215
BstZ17I GTATAC 1 cut(s) 890
BsuRI GGCC 4 cut(s) 1163, 1337, 1368, 1383
BtrI CACGTC 1 cut(s) 1297
BtsCI GGATG 7 cut(s) 4, 39, 727, 1006, 1210, 1279, 1444
BtsI GCAGTG 2 cut(s) 450, 1338
BtsIMutI CAGTG 3 cut(s) 450, 1117, 1338
Cac8I GCNNGC 2 cut(s) 564, 1165
CfoI GCGC 1 cut(s) 881
Cfr10I RCCGGY 2 cut(s) 1163, 1463
Cfr13I GGNCC 4 cut(s) 739, 1382, 1400, 1466
Csp6I GTAC 3 cut(s) 219, 426, 493
CspAI ACCGGT 1 cut(s) 1463
CviAII CATG 5 cut(s) 629, 691, 967, 1022, 1459
CviQI GTAC 3 cut(s) 219, 426, 493
DdeI CTNAG 1 cut(s) 567
DpnI GATC 2 cut(s) 91, 104
DpnII GATC 2 cut(s) 89, 102
EaeI YGGCCR 1 cut(s) 1335
Eam1104I CTCTTC 2 cut(s) 143, 830
EarI CTCTTC 2 cut(s) 143, 830
Ecl136II GAGCTC 2 cut(s) 196, 566
Eco130I CCWWGG 2 cut(s) 717, 902
Eco24I GRGCYC 2 cut(s) 198, 568
Eco31I GGTCTC 2 cut(s) 164, 191
Eco32I GATATC 1 cut(s) 501
Eco47I GGWCC 3 cut(s) 739, 1400, 1466
Eco53kI GAGCTC 2 cut(s) 196, 566
Eco57I CTGAAG 2 cut(s) 1173, 1347
Eco88I CYCGRG 1 cut(s) 197
EcoICRI GAGCTC 2 cut(s) 196, 566
EcoNI CCTNNNNNAGG 2 cut(s) 861, 1473
EcoRI GAATTC 1 cut(s) 897
EcoRV GATATC 1 cut(s) 501
EcoT14I CCWWGG 2 cut(s) 717, 902
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 2 cut(s) 198, 568
ErhI CCWWGG 2 cut(s) 717, 902
Esp3I CGTCTC 2 cut(s) 1054, 1203
FaeI CATG 5 cut(s) 632, 694, 970, 1025, 1462
FaqI GGGAC 2 cut(s) 552, 880
FatI CATG 5 cut(s) 628, 690, 966, 1021, 1458
FblI GTMKAC 2 cut(s) 792, 889
Fnu4HI GCNGC 6 cut(s) 27, 246, 603, 781, 972, 1329
FokI GGATG 6 cut(s) 46, 734, 993, 1217, 1286, 1451
FriOI GRGCYC 2 cut(s) 198, 568
Fsp4HI GCNGC 6 cut(s) 27, 246, 603, 781, 972, 1329
FspBI CTAG 2 cut(s) 429, 440
GlaI GCGC 1 cut(s) 880
GluI GCNGC 6 cut(s) 27, 246, 603, 781, 972, 1329
HaeIII GGCC 4 cut(s) 1163, 1337, 1368, 1383
HhaI GCGC 1 cut(s) 881
Hin1II CATG 5 cut(s) 632, 694, 970, 1025, 1462
Hin6I GCGC 1 cut(s) 879
HinP1I GCGC 1 cut(s) 879
HincII GTYRAC 1 cut(s) 1071
HindII GTYRAC 1 cut(s) 1071
HphI GGTGA 4 cut(s) 608, 629, 844, 1049
Hpy166II GTNNAC 4 cut(s) 620, 793, 890, 1071
Hpy188I TCNGA 6 cut(s) 9, 267, 799, 939, 1066, 1192
Hpy188III TCNNGA 2 cut(s) 199, 683
Hpy8I GTNNAC 4 cut(s) 620, 793, 890, 1071
HpyAV CCTTC 4 cut(s) 976, 1020, 1091, 1371
HpyCH4III ACNGT 4 cut(s) 596, 850, 1112, 1324
HpyCH4IV ACGT 4 cut(s) 710, 1047, 1212, 1296
HpyCH4V TGCA 7 cut(s) 4, 515, 974, 1021, 1076, 1258, 1300
HpyF10VI GCNNNNNNNGC 7 cut(s) 23, 449, 686, 1041, 1164, 1325, 1334
HpyF3I CTNAG 1 cut(s) 567
HpySE526I ACGT 4 cut(s) 710, 1047, 1212, 1296
Hsp92II CATG 5 cut(s) 632, 694, 970, 1025, 1462
HspAI GCGC 1 cut(s) 879
KroI GCCGGC 1 cut(s) 1163
KroNI GCCGGC 1 cut(s) 1165
Kzo9I GATC 2 cut(s) 89, 102
LmnI GCTCC 3 cut(s) 449, 653, 957
Lsp1109I GCAGC 4 cut(s) 232, 589, 958, 1340
LweI GCATC 4 cut(s) 13, 283, 1134, 1427
MaeI CTAG 2 cut(s) 429, 440
MaeII ACGT 4 cut(s) 710, 1047, 1212, 1296
MaeIII GTNAC 5 cut(s) 286, 379, 962, 1055, 1374
MalI GATC 2 cut(s) 91, 104
MbiI CCGCTC 1 cut(s) 680
MboI GATC 2 cut(s) 89, 102
MboII GAAGA 7 cut(s) 130, 244, 847, 1037, 1247, 1259, 1413
MfeI CAATTG 1 cut(s) 699
MhlI GDGCHC 4 cut(s) 198, 568, 658, 1360
MlsI TGGCCA 1 cut(s) 1337
MluCI AATT 7 cut(s) 147, 454, 642, 699, 727, 897, 1215
MluNI TGGCCA 1 cut(s) 1337
MlyI GAGTC 3 cut(s) 283, 847, 862
MmeI TCCRAC 4 cut(s) 232, 379, 504, 717
Mox20I TGGCCA 1 cut(s) 1337
Mph1103I ATGCAT 1 cut(s) 6
MroNI GCCGGC 1 cut(s) 1163
MscI TGGCCA 1 cut(s) 1337
MseI TTAA 5 cut(s) 12, 303, 479, 572, 987
MslI CAYNNNNRTG 1 cut(s) 1110
Msp20I TGGCCA 1 cut(s) 1337
MspR9I CCNGG 1 cut(s) 743
MunI CAATTG 1 cut(s) 699
MvnI CGCG 1 cut(s) 783
MwoI GCNNNNNNNGC 7 cut(s) 23, 449, 686, 1041, 1164, 1325, 1334
NaeI GCCGGC 1 cut(s) 1165
NciI CCSGG 1 cut(s) 743
NdeII GATC 2 cut(s) 89, 102
NgoMIV GCCGGC 1 cut(s) 1163
NlaIII CATG 5 cut(s) 632, 694, 970, 1025, 1462
NlaIV GGNNCC 2 cut(s) 909, 1456
NmuCI GTSAC 3 cut(s) 286, 379, 962
NsiI ATGCAT 1 cut(s) 6
OliI CACNNNNGTG 1 cut(s) 1110
PaeR7I CTCGAG 1 cut(s) 197
PcsI WCGNNNNNNNCGW 2 cut(s) 195, 393
PdiI GCCGGC 1 cut(s) 1165
PfeI GAWTC 7 cut(s) 45, 79, 117, 202, 704, 760, 1309
PflFI GACNNNGTC 1 cut(s) 1112
PinAI ACCGGT 1 cut(s) 1463
PkrI GCNGC 6 cut(s) 28, 247, 604, 782, 973, 1330
PleI GAGTC 3 cut(s) 283, 846, 862
PpsI GAGTC 3 cut(s) 283, 846, 862
PshAI GACNNNNGTC 1 cut(s) 872
PshBI ATTAAT 1 cut(s) 12
PsiI TTATAA 1 cut(s) 647
Psp124BI GAGCTC 2 cut(s) 198, 568
Psp1406I AACGTT 1 cut(s) 710
PspN4I GGNNCC 2 cut(s) 909, 1456
PspPI GGNCC 4 cut(s) 739, 1382, 1400, 1466
PstI CTGCAG 1 cut(s) 976
PsyI GACNNNGTC 1 cut(s) 1112
RsaI GTAC 3 cut(s) 220, 427, 494
RsaNI GTAC 3 cut(s) 219, 426, 493
RseI CAYNNNNRTG 1 cut(s) 1110
SacI GAGCTC 2 cut(s) 198, 568
SaqAI TTAA 5 cut(s) 12, 303, 479, 572, 987
SatI GCNGC 6 cut(s) 27, 246, 603, 781, 972, 1329
Sau3AI GATC 2 cut(s) 89, 102
Sau96I GGNCC 4 cut(s) 739, 1382, 1400, 1466
SchI GAGTC 3 cut(s) 283, 847, 862
ScrFI CCNGG 1 cut(s) 743
SduI GDGCHC 4 cut(s) 198, 568, 658, 1360
SfaNI GCATC 4 cut(s) 13, 283, 1134, 1427
SfcI CTRYAG 2 cut(s) 972, 1323
Sfr274I CTCGAG 1 cut(s) 197
SinI GGWCC 3 cut(s) 739, 1400, 1466
SlaI CTCGAG 1 cut(s) 197
SmiMI CAYNNNNRTG 1 cut(s) 1110
SmlI CTYRAG 6 cut(s) 95, 197, 414, 681, 1051, 1473
SmoI CTYRAG 6 cut(s) 95, 197, 414, 681, 1051, 1473
Sse9I AATT 7 cut(s) 147, 454, 642, 699, 727, 897, 1215
SsiI CCGC 6 cut(s) 17, 26, 678, 781, 1035, 1123
SspMI CTAG 2 cut(s) 429, 440
SstI GAGCTC 2 cut(s) 198, 568
StyD4I CCNGG 1 cut(s) 741
StyI CCWWGG 2 cut(s) 717, 902
TaaI ACNGT 4 cut(s) 596, 850, 1112, 1324
TaiI ACGT 4 cut(s) 713, 1050, 1215, 1299
TaqI TCGA 2 cut(s) 198, 1128
TaqII GACCGA 1 cut(s) 173
TasI AATT 7 cut(s) 147, 454, 642, 699, 727, 897, 1215
TatI WGTACW 1 cut(s) 425
TauI GCSGC 2 cut(s) 29, 783
TfiI GAWTC 7 cut(s) 45, 79, 117, 202, 704, 760, 1309
Tru1I TTAA 5 cut(s) 12, 303, 479, 572, 987
Tru9I TTAA 5 cut(s) 12, 303, 479, 572, 987
TscAI CASTG 3 cut(s) 450, 1117, 1338
TseFI GTSAC 3 cut(s) 286, 379, 962
TseI GCWGC 4 cut(s) 245, 602, 971, 1328
Tsp45I GTSAC 3 cut(s) 286, 379, 962
TspDTI ATGAA 4 cut(s) 1038, 1141, 1290, 1332
TspGWI ACGGA 3 cut(s) 72, 226, 367
TspRI CASTG 3 cut(s) 450, 1117, 1338
Tth111I GACNNNGTC 1 cut(s) 1112
VpaK11BI GGWCC 3 cut(s) 739, 1400, 1466
VspI ATTAAT 1 cut(s) 12
XagI CCTNNNNNAGG 2 cut(s) 861, 1473
XapI RAATTY 2 cut(s) 727, 897
XhoI CTCGAG 1 cut(s) 197
XmiI GTMKAC 2 cut(s) 792, 889
XspI CTAG 2 cut(s) 429, 440
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.