AT4G14240

domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0002295
Physical Location & Seq
Reverse (-)
8204347 .. 8207483
3137 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G14240.2

Sequence Viewer

Length: 1485 bp
ATGCATCTGATTAATGCGGTGGCGGCGGCGAGGATTTTATCCGGAATCGGACAATCTAACGGTAATAACGGAGGAGAAGCGATTCCGTTTGGATCGTTTGAGTGGATCACTTACGCCGGAATATCTTGTTTCCTCGTACTCTTCGCCGGGATTATGTCTGGTCTTACTTTGGGACTTATGTCTCTTGGTCTTGTCGAGCTTGAGATTCTTCAACGTAGTGGTACTCCTAATGAGAAGAAACAAGCCGCTGCGATTTTTCCGGTTGTTCAGAAACAGCATCAGCTTTTAGTGACACTGCTTCTGTGTAATGCTATGGCTATGGAGGGGCTTCCTATATATTTGGATAAGTTATTCAATGAATACGTTGCGATTATTCTTTCTGTCACATTCGTTCTTGCTTTCGGTGAGGTTATTCCTCAAGCGATATGCACTAGGTATGGACTCGCGGTTGGAGCGAATTTTGTCTGGCTTGTCCGCATTTTAATGACTCTCTGCTATCCGATTGCCTTTCCCATTGGCAAGATTTTAGATTTGGTGCTGGGACACAATGATGCTTTATTTAGGCGGGCTCAGTTGAAAGCTCTTGTATCCATTCACAGCCAAGAGGCTGGTAAGGGAGGTGAGCTTACACATGATGAGACGACAATCATTAGTGGAGCTCTTGATTTGACTGAGAAGACTGCACAAGAAGCCATGACACCAATTGAGTCTACCTTCTCCTTGGATGTAAATTCAAAATTGGATTGGGAAGCTATGGGGAAGATTCTGGCACGAGGCCATAGCCGCGTTCCTGTCTACTCTGGGAATCCGAAAAACGTTATCGGACTTCTCTTGGTGAAGAGTCTTCTTACAGTTCGCCCTGAAACAGAGACCCTTGTCAGCGCAGTTTGTATACGCCGGATTCCAAGGGTTCCAGCTGATATGCCTCTCTATGATATACTGAATGAGTTTCAAAAGGGAAGCAGTCACATGGCTGCAGTTGTGAAGGTTAAGGGGAAAAGCAAAGTCCCACCTTCAACTTTGCTTGAAGAACACACTGATGAAAGCAATGACTCCGACTTGACTGCACCTTTGTTACTAAAACGAGAGGGAAACCATGACAATGTCATTGTCACAATCGACAAGGCTAATGGACAATCTTTCTTTCAAAACAACGAGAGTGGACCTCACGGGTTTTCACATACTTCAGAGGCTATCGAGGATGGTGAGGTAATTGGTATCATCACTTTAGAAGATGTCTTTGAAGAACTTTTGCAAGAAGAGATTGTGGATGAAACTGATGAATATGTTGACGTACATAAAAGGATTCGAGTAGCAGCAGCAGCGGCTGCTTCATCAATAGCGAGAGCTCCTTCAAGCCGGAAGTTGCTTGCGCAAAAGGGAACTGGAGGACAAAATAAGCAAGGGCAGACGAATAAAGTTCCTGGTCAGGAACAAGATAAAATGCTTGGAACTATTACCGAGCCGATTCGAAGAAACAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF21

Protein Analysis

494

Amino Acids

53.58

Weight (kDa)

5.62

Isoelectric Point (pI)

43.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CNNM PF01595 41 - 203 1.1e-31 Cyclin M transmembrane N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1374
AccI GTMKAC 3 cut(s) 710, 795, 892
AccII CGCG 2 cut(s) 446, 786
AccIII TCCGGA 1 cut(s) 41
AciI CCGC 9 cut(s) 17, 23, 26, 246, 446, 475, 565, 784, 1325
AclI AACGTT 1 cut(s) 816
AclWI GGATC 2 cut(s) 100, 113
AcsI RAATTY 2 cut(s) 457, 730
AcuI CTGAAG 1 cut(s) 1170
AfaI GTAC 3 cut(s) 138, 223, 1296
AjnI CCWGG 1 cut(s) 1423
AluBI AGCT 8 cut(s) 199, 283, 581, 625, 659, 752, 917, 1349
AluI AGCT 8 cut(s) 199, 283, 581, 625, 659, 752, 917, 1349
Alw21I GWGCWC 2 cut(s) 661, 1351
Alw26I GTCTC 3 cut(s) 186, 632, 863
AlwI GGATC 2 cut(s) 100, 113
AlwNI CAGNNNCTG 1 cut(s) 1328
Aor13HI TCCGGA 1 cut(s) 41
AoxI GGCC 1 cut(s) 775
ApeKI GCWGC 6 cut(s) 248, 974, 1316, 1319, 1322, 1328
ApoI RAATTY 2 cut(s) 457, 730
ArsI GACNNNNNNTTYG 2 cut(s) 1054, 1086
AseI ATTAAT 1 cut(s) 12
Asp700I GAANNNNTTC 1 cut(s) 81
AspLEI GCGC 2 cut(s) 884, 1375
AspS9I GGNCC 1 cut(s) 1163
AsuC2I CCSGG 1 cut(s) 148
AsuHPI GGTGA 4 cut(s) 416, 632, 847, 1217
AsuII TTCGAA 1 cut(s) 1471
AvaII GGWCC 1 cut(s) 1163
BanII GRGCYC 3 cut(s) 571, 661, 1351
BauI CACGAG 1 cut(s) 771
BbsI GAAGAC 2 cut(s) 683, 836
Bbv12I GWGCWC 2 cut(s) 661, 1351
BbvI GCAGC 6 cut(s) 235, 961, 1315, 1328, 1331, 1334
BccI CCATC 1 cut(s) 1196
BcgI CGANNNNNNTGC 2 cut(s) 1046, 1080
BciT130I CCWGG 1 cut(s) 1425
BciVI GTATCC 1 cut(s) 598
BcnI CCSGG 1 cut(s) 148
BcoDI GTCTC 3 cut(s) 186, 632, 863
BfaI CTAG 1 cut(s) 432
BfmI CTRYAG 1 cut(s) 975
BfuI GTATCC 1 cut(s) 598
Bme1390I CCNGG 2 cut(s) 148, 1425
Bme18I GGWCC 1 cut(s) 1163
BmgT120I GGNCC 1 cut(s) 1163
BmiI GGNNCC 1 cut(s) 912
BmrFI CCNGG 2 cut(s) 148, 1425
BmsI GCATC 3 cut(s) 13, 286, 541
BoxI GACNNNNGTC 2 cut(s) 178, 875
BpiI GAAGAC 2 cut(s) 683, 836
BplI GAGNNNNNCTC 2 cut(s) 1150, 1182
BpmI CTGGAG 1 cut(s) 1407
Bpu14I TTCGAA 1 cut(s) 1471
BpuEI CTTGAG 2 cut(s) 221, 402
BpuMI CCSGG 1 cut(s) 148
BsaI GGTCTC 1 cut(s) 863
BsaJI CCNNGG 2 cut(s) 720, 905
BsaWI WCCGGW 2 cut(s) 41, 259
Bse1I ACTGG 1 cut(s) 1390
Bse3DI GCAATG 1 cut(s) 1054
BseAI TCCGGA 1 cut(s) 41
BseBI CCWGG 1 cut(s) 1425
BseDI CCNNGG 2 cut(s) 720, 905
BseGI GGATG 3 cut(s) 730, 1207, 1276
BseMI GCAATG 1 cut(s) 1054
BseMII CTCAG 2 cut(s) 584, 663
BseNI ACTGG 1 cut(s) 1390
BseRI GAGGAG 1 cut(s) 87
BseXI GCAGC 6 cut(s) 235, 961, 1315, 1328, 1331, 1334
BseYI CCCAGC 1 cut(s) 538
BsgI GTGCAG 2 cut(s) 666, 1050
Bsh1236I CGCG 2 cut(s) 446, 786
BshFI GGCC 1 cut(s) 777
BsiHKAI GWGCWC 2 cut(s) 661, 1351
BsiSI CCGG 6 cut(s) 42, 117, 147, 260, 898, 1360
BslFI GGGAC 3 cut(s) 186, 555, 992
BsmAI GTCTC 3 cut(s) 186, 632, 863
BsmBI CGTCTC 1 cut(s) 632
BsmFI GGGAC 3 cut(s) 186, 555, 992
BsnI GGCC 1 cut(s) 777
Bso31I GGTCTC 1 cut(s) 863
Bsp119I TTCGAA 1 cut(s) 1471
Bsp1286I GDGCHC 3 cut(s) 571, 661, 1351
Bsp13I TCCGGA 1 cut(s) 41
Bsp143I GATC 2 cut(s) 92, 105
BspACI CCGC 9 cut(s) 17, 23, 26, 246, 446, 475, 565, 784, 1325
BspANI GGCC 1 cut(s) 777
BspCNI CTCAG 2 cut(s) 583, 664
BspEI TCCGGA 1 cut(s) 41
BspFNI CGCG 2 cut(s) 446, 786
BspLI GGNNCC 1 cut(s) 912
BspMAI CTGCAG 1 cut(s) 979
BspPI GGATC 2 cut(s) 100, 113
BspT104I TTCGAA 1 cut(s) 1471
BspTNI GGTCTC 1 cut(s) 863
BsrDI GCAATG 1 cut(s) 1054
BsrI ACTGG 1 cut(s) 1390
BssECI CCNNGG 2 cut(s) 720, 905
BssMI GATC 2 cut(s) 92, 105
BssNAI GTATAC 1 cut(s) 893
BssSI CACGAG 1 cut(s) 771
BssT1I CCWWGG 2 cut(s) 720, 905
Bst1107I GTATAC 1 cut(s) 893
Bst2BI CACGAG 1 cut(s) 771
Bst2UI CCWGG 1 cut(s) 1425
Bst4CI ACNGT 2 cut(s) 62, 853
Bst6I CTCTTC 3 cut(s) 146, 833, 1254
BstAPI GCANNNNNTGC 1 cut(s) 1328
BstBI TTCGAA 1 cut(s) 1471
BstC8I GCNNGC 2 cut(s) 567, 1371
BstDEI CTNAG 2 cut(s) 570, 672
BstF5I GGATG 3 cut(s) 730, 1207, 1276
BstFNI CGCG 2 cut(s) 446, 786
BstHHI GCGC 2 cut(s) 884, 1375
BstKTI GATC 2 cut(s) 95, 108
BstMAI GTCTC 3 cut(s) 186, 632, 863
BstMBI GATC 2 cut(s) 92, 105
BstMWI GCNNNNNNNGC 7 cut(s) 23, 452, 689, 783, 1322, 1325, 1328
BstNI CCWGG 1 cut(s) 1425
BstPAI GACNNNNGTC 2 cut(s) 178, 875
BstSCI CCNGG 2 cut(s) 146, 1423
BstSFI CTRYAG 1 cut(s) 975
BstUI CGCG 2 cut(s) 446, 786
BstV1I GCAGC 6 cut(s) 235, 961, 1315, 1328, 1331, 1334
BstV2I GAAGAC 2 cut(s) 683, 836
BstXI CCANNNNNNTGG 1 cut(s) 608
BstZ17I GTATAC 1 cut(s) 893
BsuI GTATCC 1 cut(s) 598
BsuRI GGCC 1 cut(s) 777
BtsCI GGATG 3 cut(s) 730, 1207, 1276
BtsI GCAGTG 1 cut(s) 293
BtsIMutI CAGTG 2 cut(s) 293, 1035
Cac8I GCNNGC 2 cut(s) 567, 1371
CaiI CAGNNNCTG 1 cut(s) 1328
CfoI GCGC 2 cut(s) 884, 1375
Cfr13I GGNCC 1 cut(s) 1163
Csp6I GTAC 3 cut(s) 137, 222, 1295
CspCI CAANNNNNGTGG 2 cut(s) 1141, 1176
CviAII CATG 4 cut(s) 632, 694, 970, 1097
CviQI GTAC 3 cut(s) 137, 222, 1295
DdeI CTNAG 2 cut(s) 570, 672
DpnI GATC 2 cut(s) 94, 107
DpnII GATC 2 cut(s) 92, 105
Eam1104I CTCTTC 3 cut(s) 146, 833, 1254
EarI CTCTTC 3 cut(s) 146, 833, 1254
Ecl136II GAGCTC 2 cut(s) 659, 1349
Eco130I CCWWGG 2 cut(s) 720, 905
Eco24I GRGCYC 3 cut(s) 571, 661, 1351
Eco31I GGTCTC 1 cut(s) 863
Eco47I GGWCC 1 cut(s) 1163
Eco53kI GAGCTC 2 cut(s) 659, 1349
Eco57I CTGAAG 1 cut(s) 1170
EcoICRI GAGCTC 2 cut(s) 659, 1349
EcoRII CCWGG 1 cut(s) 1423
EcoT14I CCWWGG 2 cut(s) 720, 905
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 3 cut(s) 571, 661, 1351
ErhI CCWWGG 2 cut(s) 720, 905
Esp3I CGTCTC 1 cut(s) 632
FaeI CATG 4 cut(s) 635, 697, 973, 1100
FaqI GGGAC 3 cut(s) 186, 555, 992
FatI CATG 4 cut(s) 631, 693, 969, 1096
FauI CCCGC 1 cut(s) 558
FblI GTMKAC 3 cut(s) 710, 795, 892
FokI GGATG 3 cut(s) 737, 1214, 1283
FriOI GRGCYC 3 cut(s) 571, 661, 1351
FspBI CTAG 1 cut(s) 432
FspI TGCGCA 1 cut(s) 1374
GlaI GCGC 2 cut(s) 883, 1374
GsaI CCCAGC 1 cut(s) 542
GsuI CTGGAG 1 cut(s) 1407
HaeIII GGCC 1 cut(s) 777
HapII CCGG 6 cut(s) 42, 117, 147, 260, 898, 1360
HhaI GCGC 2 cut(s) 884, 1375
Hin1II CATG 4 cut(s) 635, 697, 973, 1100
Hin6I GCGC 2 cut(s) 882, 1373
HinP1I GCGC 2 cut(s) 882, 1373
HincII GTYRAC 1 cut(s) 1291
HindII GTYRAC 1 cut(s) 1291
HpaII CCGG 6 cut(s) 42, 117, 147, 260, 898, 1360
HphI GGTGA 4 cut(s) 416, 632, 847, 1217
Hpy166II GTNNAC 5 cut(s) 711, 796, 893, 1163, 1291
Hpy188I TCNGA 8 cut(s) 9, 50, 270, 501, 810, 824, 1057, 1189
Hpy188III TCNNGA 3 cut(s) 42, 662, 1430
Hpy8I GTNNAC 5 cut(s) 711, 796, 893, 1163, 1291
HpyAV CCTTC 4 cut(s) 724, 979, 1023, 1362
HpyCH4III ACNGT 2 cut(s) 62, 853
HpyCH4IV ACGT 4 cut(s) 214, 363, 816, 1293
HpyCH4V TGCA 6 cut(s) 4, 429, 683, 977, 1067, 1255
HpyF10VI GCNNNNNNNGC 7 cut(s) 23, 452, 689, 783, 1322, 1325, 1328
HpyF3I CTNAG 2 cut(s) 570, 672
HpySE526I ACGT 4 cut(s) 214, 363, 816, 1293
Hsp92II CATG 4 cut(s) 635, 697, 973, 1100
HspAI GCGC 2 cut(s) 882, 1373
Kpn2I TCCGGA 1 cut(s) 41
Kzo9I GATC 2 cut(s) 92, 105
LmnI GCTCC 3 cut(s) 452, 656, 1354
Lsp1109I GCAGC 6 cut(s) 235, 961, 1315, 1328, 1331, 1334
LweI GCATC 3 cut(s) 13, 286, 541
MaeI CTAG 1 cut(s) 432
MaeII ACGT 4 cut(s) 214, 363, 816, 1293
MaeIII GTNAC 5 cut(s) 289, 382, 965, 1074, 1111
MalI GATC 2 cut(s) 94, 107
MboI GATC 2 cut(s) 92, 105
MfeI CAATTG 1 cut(s) 702
MhlI GDGCHC 3 cut(s) 571, 661, 1351
MluCI AATT 5 cut(s) 457, 702, 730, 737, 1212
MlyI GAGTC 5 cut(s) 435, 481, 716, 850, 1046
MmeI TCCRAC 2 cut(s) 430, 1080
Mph1103I ATGCAT 1 cut(s) 6
MroI TCCGGA 1 cut(s) 41
MroXI GAANNNNTTC 1 cut(s) 81
MseI TTAA 3 cut(s) 12, 482, 990
MslI CAYNNNNRTG 4 cut(s) 482, 549, 1038, 1101
MspA1I CMGCKG 3 cut(s) 248, 917, 1325
MspI CCGG 6 cut(s) 42, 117, 147, 260, 898, 1360
MspR9I CCNGG 2 cut(s) 148, 1425
MunI CAATTG 1 cut(s) 702
MvaI CCWGG 1 cut(s) 1425
MvnI CGCG 2 cut(s) 446, 786
MwoI GCNNNNNNNGC 7 cut(s) 23, 452, 689, 783, 1322, 1325, 1328
NciI CCSGG 1 cut(s) 148
NdeII GATC 2 cut(s) 92, 105
NlaIII CATG 4 cut(s) 635, 697, 973, 1100
NlaIV GGNNCC 1 cut(s) 912
NmuCI GTSAC 4 cut(s) 289, 382, 965, 1111
NsbI TGCGCA 1 cut(s) 1374
NsiI ATGCAT 1 cut(s) 6
NspV TTCGAA 1 cut(s) 1471
PdmI GAANNNNTTC 1 cut(s) 81
PfeI GAWTC 8 cut(s) 45, 82, 205, 763, 805, 901, 1306, 1468
PflFI GACNNNGTC 1 cut(s) 1103
PleI GAGTC 5 cut(s) 435, 481, 715, 849, 1046
PpsI GAGTC 5 cut(s) 435, 481, 715, 849, 1046
PshAI GACNNNNGTC 2 cut(s) 178, 875
PshBI ATTAAT 1 cut(s) 12
Psp124BI GAGCTC 2 cut(s) 661, 1351
Psp1406I AACGTT 1 cut(s) 816
Psp6I CCWGG 1 cut(s) 1423
PspFI CCCAGC 1 cut(s) 538
PspGI CCWGG 1 cut(s) 1423
PspN4I GGNNCC 1 cut(s) 912
PspPI GGNCC 1 cut(s) 1163
PstI CTGCAG 1 cut(s) 979
PstNI CAGNNNCTG 1 cut(s) 1328
PsyI GACNNNGTC 1 cut(s) 1103
PvuII CAGCTG 1 cut(s) 917
RsaI GTAC 3 cut(s) 138, 223, 1296
RsaNI GTAC 3 cut(s) 137, 222, 1295
RseI CAYNNNNRTG 4 cut(s) 482, 549, 1038, 1101
SacI GAGCTC 2 cut(s) 661, 1351
SaqAI TTAA 3 cut(s) 12, 482, 990
Sau3AI GATC 2 cut(s) 92, 105
Sau96I GGNCC 1 cut(s) 1163
SchI GAGTC 5 cut(s) 435, 481, 716, 850, 1046
ScrFI CCNGG 2 cut(s) 148, 1425
SduI GDGCHC 3 cut(s) 571, 661, 1351
SfaNI GCATC 3 cut(s) 13, 286, 541
SfcI CTRYAG 1 cut(s) 975
SfuI TTCGAA 1 cut(s) 1471
SinI GGWCC 1 cut(s) 1163
SmiMI CAYNNNNRTG 4 cut(s) 482, 549, 1038, 1101
SmlI CTYRAG 2 cut(s) 200, 417
SmoI CTYRAG 2 cut(s) 200, 417
Sse9I AATT 5 cut(s) 457, 702, 730, 737, 1212
SsiI CCGC 9 cut(s) 17, 23, 26, 246, 446, 475, 565, 784, 1325
SspMI CTAG 1 cut(s) 432
SstI GAGCTC 2 cut(s) 661, 1351
StyD4I CCNGG 2 cut(s) 146, 1423
StyI CCWWGG 2 cut(s) 720, 905
TaaI ACNGT 2 cut(s) 62, 853
TaiI ACGT 4 cut(s) 217, 366, 819, 1296
TaqI TCGA 5 cut(s) 195, 1119, 1197, 1309, 1471
TasI AATT 5 cut(s) 457, 702, 730, 737, 1212
TauI GCSGC 5 cut(s) 26, 29, 248, 786, 1328
TfiI GAWTC 8 cut(s) 45, 82, 205, 763, 805, 901, 1306, 1468
Tru1I TTAA 3 cut(s) 12, 482, 990
Tru9I TTAA 3 cut(s) 12, 482, 990
TscAI CASTG 2 cut(s) 300, 1042
TseFI GTSAC 4 cut(s) 289, 382, 965, 1111
TseI GCWGC 6 cut(s) 248, 974, 1316, 1319, 1322, 1328
Tsp45I GTSAC 4 cut(s) 289, 382, 965, 1111
TspDTI ATGAA 5 cut(s) 372, 1056, 1287, 1296, 1323
TspGWI ACGGA 2 cut(s) 75, 84
TspRI CASTG 2 cut(s) 300, 1042
Tth111I GACNNNGTC 1 cut(s) 1103
VpaK11BI GGWCC 1 cut(s) 1163
VspI ATTAAT 1 cut(s) 12
XapI RAATTY 2 cut(s) 457, 730
XmiI GTMKAC 3 cut(s) 710, 795, 892
XmnI GAANNNNTTC 1 cut(s) 81
XspI CTAG 1 cut(s) 432
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.