Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0002295

Physical Location & Seq

Genomic Coordinates Forward (+)

53745777 .. 53746771

Gene Structure 995 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG332200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGCATGGATATCCCAGGGTTCCAGCCGATATGCCTTTGTATGATATACTTAATGAGTTTCAAAAAGGAAGCAGTCACCTGGCTGCTGTAGTGAAGATCAAAGGAAAAACCAAGAATCCTCTACTTTTTGCTGATAGAGAGAAACTTGAGGAGGCCAGACCAACCAATGGATGTGTTGCCATTGATGTTGATAAACGTCCAAGGTCTCTGACAAACATACCAACTGTTCAAGAAAATGATGCTACTACAAATGGCATTTCAAATTCATCAGATGATATTGAAGATGGGGAGGTGATTGGAATCATAACCCTGGAGGATGTTTTTGAAGAACTTCTGCAAGAAGAAATTGTAGATGAGACAGATGTATATATTGATGTACATAAGAGGATACGTGTGGCTGCTGCTGCAGCTGCTTCATCCATGTCCAGAGCTCAGTCAAGTCAGAAGTTGATTAGTCAAAAGCATGCAGGAGGTACAAATAAGCATGGACAAACCCCGAAGAAGTCTGGGGAGGATGGTGCACATTCGACAAGGTTTTCAGGGAGTTCACGGGAGCCTCTTCTAGGTGTTATAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03022 ko05169 ko05203 map03022 map05169 map05203

Pfam Domains

Protein Families

DUF21

Protein Analysis

192

Amino Acids

20.9

Weight (kDa)

5.7

Isoelectric Point (pI)

44.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002295)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14230 AT4G14240 AT4G14240
fragaria_vesca	FvH4_2g23860 FvH4_2g23860 FvH4_4g14430 FvH4_4g14430 FvH4_4g14430 FvH4_4g14430
malus_domestica	MD03G1268300.v1.1 MD11G1124600.v1.1 MD11G1289100.v1.1 MD13G1182700.v1.1 MD16G1183100.v1.1
prunus_persica	Prupe.1G150600_v2.0.a1 Prupe.1G150600_v2.0.a1 Prupe.8G244000_v2.0.a1
pyrus_communis	pycom03g21420 pycom11g25650 pycom13g15760 pycom16g15380 pycom16g15390
rosa_chinensis	RchiOBHm_Chr4g0418451 RchiOBHm_Chr6g0291461
rosa_laevigata	RLG00000007864
rosa_multiflora	Rmu_sc0001266.1_g000005 Rmu_sc0001879.1_g000044
rosa_roxburghii	Rroxscaffold_5G00361680 Rroxscaffold_7G00176030
rosa_rugosa	Rorug04G0153300 Rorug06G0219700
rosa_samantha	Rh4AG214500 Rh4BG215800 Rh4CG226200 Rh4DG213100 Rh6AG331900 Rh6BG338800 Rh6DG332100 Rh6DG332200
rosa_wichuraiana	Rw0G010040 Rw4G018230 Rw6G028830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	572
AccB7I	CCANNNNNTGG	1 cut(s)	167
AcsI	RAATTY	1 cut(s)	262
AfaI	GTAC	2 cut(s)	378, 475
AfiI	CCNNNNNNNGG	2 cut(s)	167, 563
AflIII	ACRYGT	1 cut(s)	391
AgsI	TTSAA	5 cut(s)	62, 230, 261, 281, 326
AjnI	CCWGG	3 cut(s)	14, 78, 309
AluBI	AGCT	2 cut(s)	410, 431
AluI	AGCT	2 cut(s)	410, 431
Alw21I	GWGCWC	2 cut(s)	433, 523
Alw26I	GTCTC	2 cut(s)	210, 350
Alw44I	GTGCAC	1 cut(s)	519
AoxI	GGCC	1 cut(s)	153
ApaLI	GTGCAC	1 cut(s)	519
ApeKI	GCWGC	6 cut(s)	83, 398, 401, 404, 407, 410
ApoI	RAATTY	1 cut(s)	262
Asp700I	GAANNNNTTC	1 cut(s)	330
AsuHPI	GGTGA	2 cut(s)	68, 304
BaeGI	GKGCMC	1 cut(s)	523
BanII	GRGCYC	1 cut(s)	433
Bbv12I	GWGCWC	2 cut(s)	433, 523
BbvI	GCAGC	6 cut(s)	70, 385, 388, 391, 397, 419
BccI	CCATC	2 cut(s)	278, 509
BciT130I	CCWGG	3 cut(s)	16, 80, 311
BciVI	GTATCC	1 cut(s)	381
BcoDI	GTCTC	2 cut(s)	210, 350
BfaI	CTAG	1 cut(s)	563
BfmI	CTRYAG	2 cut(s)	87, 405
BfuI	GTATCC	1 cut(s)	381
BisI	GCNGC	6 cut(s)	84, 399, 402, 405, 408, 411
BlsI	GCNGC	6 cut(s)	85, 400, 403, 406, 409, 412
Bme1390I	CCNGG	3 cut(s)	16, 80, 311
BmiI	GGNNCC	2 cut(s)	21, 555
BmrFI	CCNGG	3 cut(s)	16, 80, 311
BmsI	GCATC	1 cut(s)	229
BpmI	CTGGAG	1 cut(s)	332
BpuEI	CTTGAG	1 cut(s)	167
BsaAI	YACGTR	1 cut(s)	392
BsaBI	GATNNNNATC	1 cut(s)	299
BsaI	GGTCTC	1 cut(s)	210
BsaJI	CCNNGG	4 cut(s)	14, 15, 200, 309
Bsc4I	CCNNNNNNNGG	2 cut(s)	167, 563
Bse8I	GATNNNNATC	1 cut(s)	299
BseBI	CCWGG	3 cut(s)	16, 80, 311
BseDI	CCNNGG	4 cut(s)	14, 15, 200, 309
BseGI	GGATG	4 cut(s)	176, 322, 416, 520
BseJI	GATNNNNATC	1 cut(s)	299
BseLI	CCNNNNNNNGG	2 cut(s)	167, 563
BseMII	CTCAG	1 cut(s)	446
BseRI	GAGGAG	1 cut(s)	164
BseSI	GKGCMC	1 cut(s)	523
BseXI	GCAGC	6 cut(s)	70, 385, 388, 391, 397, 419
BshFI	GGCC	1 cut(s)	155
BsiHKAI	GWGCWC	2 cut(s)	433, 523
BslI	CCNNNNNNNGG	2 cut(s)	167, 563
BsmAI	GTCTC	2 cut(s)	210, 350
BsnI	GGCC	1 cut(s)	155
Bso31I	GGTCTC	1 cut(s)	210
Bsp1286I	GDGCHC	2 cut(s)	433, 523
Bsp1407I	TGTACA	1 cut(s)	376
Bsp143I	GATC	1 cut(s)	96
BspANI	GGCC	1 cut(s)	155
BspCNI	CTCAG	1 cut(s)	445
BspLI	GGNNCC	2 cut(s)	21, 555
BspMAI	CTGCAG	1 cut(s)	409
BspTNI	GGTCTC	1 cut(s)	210
BsrGI	TGTACA	1 cut(s)	376
BssECI	CCNNGG	4 cut(s)	14, 15, 200, 309
BssMI	GATC	1 cut(s)	96
BssT1I	CCWWGG	1 cut(s)	200
Bst2UI	CCWGG	3 cut(s)	16, 80, 311
Bst4CI	ACNGT	1 cut(s)	226
Bst6I	CTCTTC	1 cut(s)	564
BstAUI	TGTACA	1 cut(s)	376
BstBAI	YACGTR	1 cut(s)	392
BstC8I	GCNNGC	1 cut(s)	465
BstDEI	CTNAG	1 cut(s)	432
BstENI	CCTNNNNNAGG	1 cut(s)	561
BstF5I	GGATG	4 cut(s)	176, 322, 416, 520
BstKTI	GATC	1 cut(s)	99
BstMAI	GTCTC	2 cut(s)	210, 350
BstMBI	GATC	1 cut(s)	96
BstMWI	GCNNNNNNNGC	3 cut(s)	404, 407, 410
BstNI	CCWGG	3 cut(s)	16, 80, 311
BstNSI	RCATGY	1 cut(s)	467
BstSCI	CCNGG	3 cut(s)	14, 78, 309
BstSFI	CTRYAG	2 cut(s)	87, 405
BstSLI	GKGCMC	1 cut(s)	523
BstV1I	GCAGC	6 cut(s)	70, 385, 388, 391, 397, 419
BsuI	GTATCC	1 cut(s)	381
BsuRI	GGCC	1 cut(s)	155
BtsCI	GGATG	4 cut(s)	176, 322, 416, 520
Cac8I	GCNNGC	1 cut(s)	465
Csp6I	GTAC	2 cut(s)	377, 474
CviAII	CATG	4 cut(s)	5, 421, 464, 485
CviJI	RGCY	7 cut(s)	26, 83, 155, 398, 410, 431, 556
CviKI_1	RGCY	7 cut(s)	26, 83, 155, 398, 410, 431, 556
CviQI	GTAC	2 cut(s)	377, 474
DdeI	CTNAG	1 cut(s)	432
DpnI	GATC	1 cut(s)	98
DpnII	GATC	1 cut(s)	96
Eam1104I	CTCTTC	1 cut(s)	564
EarI	CTCTTC	1 cut(s)	564
Ecl136II	GAGCTC	1 cut(s)	431
Eco130I	CCWWGG	1 cut(s)	200
Eco24I	GRGCYC	1 cut(s)	433
Eco31I	GGTCTC	1 cut(s)	210
Eco32I	GATATC	1 cut(s)	11
Eco53kI	GAGCTC	1 cut(s)	431
EcoICRI	GAGCTC	1 cut(s)	431
EcoNI	CCTNNNNNAGG	1 cut(s)	561
EcoRII	CCWGG	3 cut(s)	14, 78, 309
EcoRV	GATATC	1 cut(s)	11
EcoT14I	CCWWGG	1 cut(s)	200
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	433
ErhI	CCWWGG	1 cut(s)	200
FaeI	CATG	4 cut(s)	8, 424, 467, 488
FatI	CATG	4 cut(s)	4, 420, 463, 484
Fnu4HI	GCNGC	6 cut(s)	84, 399, 402, 405, 408, 411
FokI	GGATG	4 cut(s)	183, 329, 403, 527
FriOI	GRGCYC	1 cut(s)	433
Fsp4HI	GCNGC	6 cut(s)	84, 399, 402, 405, 408, 411
FspBI	CTAG	1 cut(s)	563
GluI	GCNGC	6 cut(s)	84, 399, 402, 405, 408, 411
GsuI	CTGGAG	1 cut(s)	332
HaeIII	GGCC	1 cut(s)	155
Hin1II	CATG	4 cut(s)	8, 424, 467, 488
HinfI	GANTC	2 cut(s)	115, 300
HphI	GGTGA	2 cut(s)	68, 304
Hpy166II	GTNNAC	2 cut(s)	521, 548
Hpy188I	TCNGA	3 cut(s)	210, 271, 444
Hpy188III	TCNNGA	2 cut(s)	230, 426
Hpy8I	GTNNAC	2 cut(s)	521, 548
HpyCH4III	ACNGT	1 cut(s)	226
HpyCH4IV	ACGT	2 cut(s)	196, 391
HpyCH4V	TGCA	5 cut(s)	4, 337, 407, 467, 521
HpyF10VI	GCNNNNNNNGC	3 cut(s)	404, 407, 410
HpyF3I	CTNAG	1 cut(s)	432
HpySE526I	ACGT	2 cut(s)	196, 391
Hsp92II	CATG	4 cut(s)	8, 424, 467, 488
Kzo9I	GATC	1 cut(s)	96
LmnI	GCTCC	1 cut(s)	553
Lsp1109I	GCAGC	6 cut(s)	70, 385, 388, 391, 397, 419
LweI	GCATC	1 cut(s)	229
MaeI	CTAG	1 cut(s)	563
MaeII	ACGT	2 cut(s)	196, 391
MaeIII	GTNAC	1 cut(s)	74
MalI	GATC	1 cut(s)	98
MboI	GATC	1 cut(s)	96
MboII	GAAGA	6 cut(s)	106, 293, 338, 353, 511, 551
MhlI	GDGCHC	2 cut(s)	433, 523
MluCI	AATT	2 cut(s)	262, 345
MnlI	CCTC	9 cut(s)	129, 142, 145, 283, 307, 378, 464, 505, 567
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	330
MseI	TTAA	1 cut(s)	51
MspA1I	CMGCKG	1 cut(s)	410
MspR9I	CCNGG	3 cut(s)	16, 80, 311
MvaI	CCWGG	3 cut(s)	16, 80, 311
MwoI	GCNNNNNNNGC	3 cut(s)	404, 407, 410
NdeII	GATC	1 cut(s)	96
NlaIII	CATG	4 cut(s)	8, 424, 467, 488
NlaIV	GGNNCC	2 cut(s)	21, 555
NmuCI	GTSAC	1 cut(s)	74
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	467
PaeI	GCATGC	1 cut(s)	467
PasI	CCCWGGG	1 cut(s)	15
PdmI	GAANNNNTTC	1 cut(s)	330
PfeI	GAWTC	2 cut(s)	115, 300
PflMI	CCANNNNNTGG	1 cut(s)	167
PkrI	GCNGC	6 cut(s)	85, 400, 403, 406, 409, 412
Ppu21I	YACGTR	1 cut(s)	392
PsiI	TTATAA	1 cut(s)	572
Psp124BI	GAGCTC	1 cut(s)	433
Psp6I	CCWGG	3 cut(s)	14, 78, 309
PspGI	CCWGG	3 cut(s)	14, 78, 309
PspN4I	GGNNCC	2 cut(s)	21, 555
PstI	CTGCAG	1 cut(s)	409
PvuII	CAGCTG	1 cut(s)	410
RsaI	GTAC	2 cut(s)	378, 475
RsaNI	GTAC	2 cut(s)	377, 474
SacI	GAGCTC	1 cut(s)	433
SaqAI	TTAA	1 cut(s)	51
SatI	GCNGC	6 cut(s)	84, 399, 402, 405, 408, 411
Sau3AI	GATC	1 cut(s)	96
ScrFI	CCNGG	3 cut(s)	16, 80, 311
SduI	GDGCHC	2 cut(s)	433, 523
SfaNI	GCATC	1 cut(s)	229
SfcI	CTRYAG	2 cut(s)	87, 405
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
SphI	GCATGC	1 cut(s)	467
Sse9I	AATT	2 cut(s)	262, 345
SspMI	CTAG	1 cut(s)	563
SstI	GAGCTC	1 cut(s)	433
StyD4I	CCNGG	3 cut(s)	14, 78, 309
StyI	CCWWGG	1 cut(s)	200
TaaI	ACNGT	1 cut(s)	226
TaiI	ACGT	2 cut(s)	199, 394
TaqI	TCGA	1 cut(s)	527
TasI	AATT	2 cut(s)	262, 345
TatI	WGTACW	1 cut(s)	376
TfiI	GAWTC	2 cut(s)	115, 300
Tru1I	TTAA	1 cut(s)	51
Tru9I	TTAA	1 cut(s)	51
TseFI	GTSAC	1 cut(s)	74
TseI	GCWGC	6 cut(s)	83, 398, 401, 404, 407, 410
Tsp45I	GTSAC	1 cut(s)	74
TspDTI	ATGAA	2 cut(s)	255, 405
Van91I	CCANNNNNTGG	1 cut(s)	167
VneI	GTGCAC	1 cut(s)	519
XagI	CCTNNNNNAGG	1 cut(s)	561
XapI	RAATTY	1 cut(s)	262
XceI	RCATGY	1 cut(s)	467
XmnI	GAANNNNTTC	1 cut(s)	330
XspI	CTAG	1 cut(s)	563
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.