Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002295

Physical Location & Seq

Genomic Coordinates Reverse (-)

15511363 .. 15515351

Gene Structure 3989 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00176030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGCCAACTGTTCAAGAAAATGATGCTACTACAAATGGCATTTCAAATTCATCAGATGATATTGAAGATGGGGAGGTGATTGGAATCATAACCCTGGAGGATGTTTTTGAAGAACTTCTGCAAGAAGAAATTGTAGATGAGACAGATGTATATATTGATGTACATAAGAGGATACGTGTGGCTGCTGCTGCAGCTGCTTCATCCATGTCCAGAGCTCAGTCAAGTCAGAAGTTGATTAGTCAAAAGCATGCAGGGGCTACAAATAAGCATGGACAAACCCCGAGGAAGTCTGGGGAGGATGATGCACATTCGACGAGGTTTTCAGGGAGTTCACGGGAGCCTCTTCTAGGTGTTATAAGAAAACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03022 ko05169 ko05203 map03022 map05169 map05203

Pfam Domains

Protein Families

DUF21

Protein Analysis

122

Amino Acids

13.23

Weight (kDa)

4.88

Isoelectric Point (pI)

52.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002295)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14230 AT4G14240 AT4G14240
fragaria_vesca	FvH4_2g23860 FvH4_2g23860 FvH4_4g14430 FvH4_4g14430 FvH4_4g14430 FvH4_4g14430
malus_domestica	MD03G1268300.v1.1 MD11G1124600.v1.1 MD11G1289100.v1.1 MD13G1182700.v1.1 MD16G1183100.v1.1
prunus_persica	Prupe.1G150600_v2.0.a1 Prupe.1G150600_v2.0.a1 Prupe.8G244000_v2.0.a1
pyrus_communis	pycom03g21420 pycom11g25650 pycom13g15760 pycom16g15380 pycom16g15390
rosa_chinensis	RchiOBHm_Chr4g0418451 RchiOBHm_Chr6g0291461
rosa_laevigata	RLG00000007864
rosa_multiflora	Rmu_sc0001266.1_g000005 Rmu_sc0001879.1_g000044
rosa_roxburghii	Rroxscaffold_5G00361680 Rroxscaffold_7G00176030
rosa_rugosa	Rorug04G0153300 Rorug06G0219700
rosa_samantha	Rh4AG214500 Rh4BG215800 Rh4CG226200 Rh4DG213100 Rh6AG331900 Rh6BG338800 Rh6DG332100 Rh6DG332200
rosa_wichuraiana	Rw0G010040 Rw4G018230 Rw6G028830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	356
AcsI	RAATTY	1 cut(s)	46
AfaI	GTAC	1 cut(s)	162
AfiI	CCNNNNNNNGG	1 cut(s)	347
AflIII	ACRYGT	1 cut(s)	175
AgsI	TTSAA	4 cut(s)	14, 45, 65, 110
AjnI	CCWGG	1 cut(s)	93
AluBI	AGCT	2 cut(s)	194, 215
AluI	AGCT	2 cut(s)	194, 215
Alw21I	GWGCWC	1 cut(s)	217
Alw26I	GTCTC	1 cut(s)	134
Ama87I	CYCGRG	1 cut(s)	280
ApeKI	GCWGC	5 cut(s)	182, 185, 188, 191, 194
ApoI	RAATTY	1 cut(s)	46
Asp700I	GAANNNNTTC	1 cut(s)	114
AsuHPI	GGTGA	1 cut(s)	88
AvaI	CYCGRG	1 cut(s)	280
BanII	GRGCYC	1 cut(s)	217
Bbv12I	GWGCWC	1 cut(s)	217
BbvI	GCAGC	5 cut(s)	169, 172, 175, 181, 203
BccI	CCATC	1 cut(s)	62
BciT130I	CCWGG	1 cut(s)	95
BciVI	GTATCC	1 cut(s)	165
BcoDI	GTCTC	1 cut(s)	134
BfaI	CTAG	1 cut(s)	347
BfmI	CTRYAG	1 cut(s)	189
BfuI	GTATCC	1 cut(s)	165
BisI	GCNGC	5 cut(s)	183, 186, 189, 192, 195
BlsI	GCNGC	5 cut(s)	184, 187, 190, 193, 196
Bme1390I	CCNGG	1 cut(s)	95
BmeT110I	CYCGRG	1 cut(s)	280
BmiI	GGNNCC	1 cut(s)	339
BmrFI	CCNGG	1 cut(s)	95
BmsI	GCATC	2 cut(s)	13, 292
BpmI	CTGGAG	1 cut(s)	116
BsaAI	YACGTR	1 cut(s)	176
BsaBI	GATNNNNATC	1 cut(s)	83
BsaJI	CCNNGG	2 cut(s)	93, 281
Bsc4I	CCNNNNNNNGG	1 cut(s)	347
Bse8I	GATNNNNATC	1 cut(s)	83
BseBI	CCWGG	1 cut(s)	95
BseDI	CCNNGG	2 cut(s)	93, 281
BseGI	GGATG	3 cut(s)	106, 200, 304
BseJI	GATNNNNATC	1 cut(s)	83
BseLI	CCNNNNNNNGG	1 cut(s)	347
BseMII	CTCAG	1 cut(s)	230
BseXI	GCAGC	5 cut(s)	169, 172, 175, 181, 203
BsiHKAI	GWGCWC	1 cut(s)	217
BsiHKCI	CYCGRG	1 cut(s)	280
BslI	CCNNNNNNNGG	1 cut(s)	347
BsmAI	GTCTC	1 cut(s)	134
BsoBI	CYCGRG	1 cut(s)	280
Bsp1286I	GDGCHC	1 cut(s)	217
Bsp1407I	TGTACA	1 cut(s)	160
BspCNI	CTCAG	1 cut(s)	229
BspLI	GGNNCC	1 cut(s)	339
BspMAI	CTGCAG	1 cut(s)	193
BsrGI	TGTACA	1 cut(s)	160
BssECI	CCNNGG	2 cut(s)	93, 281
Bst2UI	CCWGG	1 cut(s)	95
Bst4CI	ACNGT	2 cut(s)	10, 366
Bst6I	CTCTTC	1 cut(s)	348
BstAUI	TGTACA	1 cut(s)	160
BstBAI	YACGTR	1 cut(s)	176
BstC8I	GCNNGC	1 cut(s)	249
BstDEI	CTNAG	1 cut(s)	216
BstENI	CCTNNNNNAGG	1 cut(s)	345
BstF5I	GGATG	3 cut(s)	106, 200, 304
BstMAI	GTCTC	1 cut(s)	134
BstMWI	GCNNNNNNNGC	3 cut(s)	188, 191, 194
BstNI	CCWGG	1 cut(s)	95
BstNSI	RCATGY	1 cut(s)	251
BstSCI	CCNGG	1 cut(s)	93
BstSFI	CTRYAG	1 cut(s)	189
BstV1I	GCAGC	5 cut(s)	169, 172, 175, 181, 203
BsuI	GTATCC	1 cut(s)	165
BtsCI	GGATG	3 cut(s)	106, 200, 304
Cac8I	GCNNGC	1 cut(s)	249
Csp6I	GTAC	1 cut(s)	161
CviAII	CATG	3 cut(s)	205, 248, 269
CviJI	RGCY	5 cut(s)	182, 194, 215, 257, 340
CviKI_1	RGCY	5 cut(s)	182, 194, 215, 257, 340
CviQI	GTAC	1 cut(s)	161
DdeI	CTNAG	1 cut(s)	216
Eam1104I	CTCTTC	1 cut(s)	348
EarI	CTCTTC	1 cut(s)	348
Ecl136II	GAGCTC	1 cut(s)	215
Eco24I	GRGCYC	1 cut(s)	217
Eco53kI	GAGCTC	1 cut(s)	215
Eco88I	CYCGRG	1 cut(s)	280
EcoICRI	GAGCTC	1 cut(s)	215
EcoNI	CCTNNNNNAGG	1 cut(s)	345
EcoRII	CCWGG	1 cut(s)	93
EcoT38I	GRGCYC	1 cut(s)	217
FaeI	CATG	3 cut(s)	208, 251, 272
FaiI	YATR	8 cut(s)	89, 151, 153, 165, 206, 249, 270, 356
FatI	CATG	3 cut(s)	204, 247, 268
Fnu4HI	GCNGC	5 cut(s)	183, 186, 189, 192, 195
FokI	GGATG	3 cut(s)	113, 187, 311
FriOI	GRGCYC	1 cut(s)	217
Fsp4HI	GCNGC	5 cut(s)	183, 186, 189, 192, 195
FspBI	CTAG	1 cut(s)	347
GluI	GCNGC	5 cut(s)	183, 186, 189, 192, 195
GsuI	CTGGAG	1 cut(s)	116
Hin1II	CATG	3 cut(s)	208, 251, 272
HinfI	GANTC	1 cut(s)	84
HphI	GGTGA	1 cut(s)	88
Hpy166II	GTNNAC	1 cut(s)	332
Hpy188I	TCNGA	2 cut(s)	55, 228
Hpy188III	TCNNGA	2 cut(s)	14, 210
Hpy8I	GTNNAC	1 cut(s)	332
Hpy99I	CGWCG	1 cut(s)	316
HpyCH4III	ACNGT	2 cut(s)	10, 366
HpyCH4IV	ACGT	1 cut(s)	175
HpyCH4V	TGCA	4 cut(s)	121, 191, 251, 305
HpyF10VI	GCNNNNNNNGC	3 cut(s)	188, 191, 194
HpyF3I	CTNAG	1 cut(s)	216
HpySE526I	ACGT	1 cut(s)	175
Hsp92II	CATG	3 cut(s)	208, 251, 272
LmnI	GCTCC	1 cut(s)	337
LpnPI	CCDG	6 cut(s)	80, 107, 223, 237, 276, 309
Lsp1109I	GCAGC	5 cut(s)	169, 172, 175, 181, 203
LweI	GCATC	2 cut(s)	13, 292
MaeI	CTAG	1 cut(s)	347
MaeII	ACGT	1 cut(s)	175
MboII	GAAGA	4 cut(s)	77, 122, 137, 335
MhlI	GDGCHC	1 cut(s)	217
MluCI	AATT	2 cut(s)	46, 129
MnlI	CCTC	7 cut(s)	67, 91, 162, 276, 289, 309, 351
MroXI	GAANNNNTTC	1 cut(s)	114
MspA1I	CMGCKG	1 cut(s)	194
MspR9I	CCNGG	1 cut(s)	95
MvaI	CCWGG	1 cut(s)	95
MwoI	GCNNNNNNNGC	3 cut(s)	188, 191, 194
NlaIII	CATG	3 cut(s)	208, 251, 272
NlaIV	GGNNCC	1 cut(s)	339
NspI	RCATGY	1 cut(s)	251
PaeI	GCATGC	1 cut(s)	251
PdmI	GAANNNNTTC	1 cut(s)	114
PfeI	GAWTC	1 cut(s)	84
PkrI	GCNGC	5 cut(s)	184, 187, 190, 193, 196
Ppu21I	YACGTR	1 cut(s)	176
PsiI	TTATAA	1 cut(s)	356
Psp124BI	GAGCTC	1 cut(s)	217
Psp6I	CCWGG	1 cut(s)	93
PspGI	CCWGG	1 cut(s)	93
PspN4I	GGNNCC	1 cut(s)	339
PstI	CTGCAG	1 cut(s)	193
PvuII	CAGCTG	1 cut(s)	194
RsaI	GTAC	1 cut(s)	162
RsaNI	GTAC	1 cut(s)	161
SacI	GAGCTC	1 cut(s)	217
SatI	GCNGC	5 cut(s)	183, 186, 189, 192, 195
ScrFI	CCNGG	1 cut(s)	95
SduI	GDGCHC	1 cut(s)	217
SetI	ASST	6 cut(s)	78, 178, 196, 217, 320, 352
SfaNI	GCATC	2 cut(s)	13, 292
SfcI	CTRYAG	1 cut(s)	189
SphI	GCATGC	1 cut(s)	251
Sse9I	AATT	2 cut(s)	46, 129
SspMI	CTAG	1 cut(s)	347
SstI	GAGCTC	1 cut(s)	217
StyD4I	CCNGG	1 cut(s)	93
TaaI	ACNGT	2 cut(s)	10, 366
TaiI	ACGT	1 cut(s)	178
TaqI	TCGA	1 cut(s)	311
TasI	AATT	2 cut(s)	46, 129
TatI	WGTACW	1 cut(s)	160
TfiI	GAWTC	1 cut(s)	84
TseI	GCWGC	5 cut(s)	182, 185, 188, 191, 194
TspDTI	ATGAA	2 cut(s)	39, 189
XagI	CCTNNNNNAGG	1 cut(s)	345
XapI	RAATTY	1 cut(s)	46
XceI	RCATGY	1 cut(s)	251
XmnI	GAANNNNTTC	1 cut(s)	114
XspI	CTAG	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.