Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0002295

Physical Location & Seq

Genomic Coordinates Reverse (-)

11308985 .. 11309903

Gene Structure 919 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g15380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGACATGATAGATGTGTGTGAAAGAATTTACCACTATAAAGGTCCTCGACCAACCATTGATGGAAAGAGAGATGAATGGAACGGAGACACTGGCACGGACTCCCAACTGACTACTCCTTTGCTATCCAAGCAGGATGGAAAGCCGGACAGTGTTGTTGTTGATATACCCAGGATACCAAGGCCCCCTCATAGACACGAGGAAACTTTTTCACCCCACAGTGATAAAGCAACAAATGGTTTGCTCCAGGTATCAGAGGATATCGAGGAGGGTGAAGTCATTGGGATTATCACTCTGAAAGATGTATTTGAAGAACGCCTGCAGGAGGAGATTGTGGATGAAACAGATGAATATGTTGATGTACATAAAAGCATACGTGTCGCTGCAGCTGCAGCTGCTTCATCAGTGGCACGGGCTCCATCGATTAGGAGGTTAAATGTGAACAAGGGACCTGCCACTGGACAAAATGCAGGCCAAAAAGTAAGCAAGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF21

Protein Analysis

165

Amino Acids

18.12

Weight (kDa)

5.05

Isoelectric Point (pI)

43.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002295)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14230 AT4G14240 AT4G14240
fragaria_vesca	FvH4_2g23860 FvH4_2g23860 FvH4_4g14430 FvH4_4g14430 FvH4_4g14430 FvH4_4g14430
malus_domestica	MD03G1268300.v1.1 MD11G1124600.v1.1 MD11G1289100.v1.1 MD13G1182700.v1.1 MD16G1183100.v1.1
prunus_persica	Prupe.1G150600_v2.0.a1 Prupe.1G150600_v2.0.a1 Prupe.8G244000_v2.0.a1
pyrus_communis	pycom03g21420 pycom11g25650 pycom13g15760 pycom16g15380 pycom16g15390
rosa_chinensis	RchiOBHm_Chr4g0418451 RchiOBHm_Chr6g0291461
rosa_laevigata	RLG00000007864
rosa_multiflora	Rmu_sc0001266.1_g000005 Rmu_sc0001879.1_g000044
rosa_roxburghii	Rroxscaffold_5G00361680 Rroxscaffold_7G00176030
rosa_rugosa	Rorug04G0153300 Rorug06G0219700
rosa_samantha	Rh4AG214500 Rh4BG215800 Rh4CG226200 Rh4DG213100 Rh6AG331900 Rh6BG338800 Rh6DG332100 Rh6DG332200
rosa_wichuraiana	Rw0G010040 Rw4G018230 Rw6G028830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	460
AcsI	RAATTY	1 cut(s)	27
AfaI	GTAC	1 cut(s)	363
AfiI	CCNNNNNNNGG	2 cut(s)	325, 458
AflIII	ACRYGT	1 cut(s)	376
AgsI	TTSAA	1 cut(s)	311
AjnI	CCWGG	2 cut(s)	170, 246
AluBI	AGCT	2 cut(s)	389, 395
AluI	AGCT	2 cut(s)	389, 395
Alw26I	GTCTC	1 cut(s)	81
AoxI	GGCC	2 cut(s)	182, 472
ApeKI	GCWGC	5 cut(s)	383, 386, 389, 392, 395
ApoI	RAATTY	1 cut(s)	27
ArsI	GACNNNNNNTTYG	2 cut(s)	103, 135
AspS9I	GGNCC	3 cut(s)	44, 183, 449
AsuHPI	GGTGA	2 cut(s)	204, 284
AvaII	GGWCC	2 cut(s)	44, 449
BanII	GRGCYC	1 cut(s)	418
BauI	CACGAG	1 cut(s)	197
BbvI	GCAGC	5 cut(s)	370, 376, 382, 398, 404
BccI	CCATC	3 cut(s)	56, 131, 427
BcgI	CGANNNNNNTGC	2 cut(s)	361, 395
BciT130I	CCWGG	2 cut(s)	172, 248
BciVI	GTATCC	1 cut(s)	168
BcoDI	GTCTC	1 cut(s)	81
BfmI	CTRYAG	3 cut(s)	320, 384, 390
BfuAI	ACCTGC	1 cut(s)	460
BfuI	GTATCC	1 cut(s)	168
BisI	GCNGC	5 cut(s)	384, 387, 390, 393, 396
BlsI	GCNGC	5 cut(s)	385, 388, 391, 394, 397
Bme1390I	CCNGG	2 cut(s)	172, 248
Bme18I	GGWCC	2 cut(s)	44, 449
BmgT120I	GGNCC	3 cut(s)	44, 183, 449
BmiI	GGNNCC	3 cut(s)	185, 417, 450
BmrFI	CCNGG	2 cut(s)	172, 248
BpmI	CTGGAG	1 cut(s)	230
Bsa29I	ATCGAT	1 cut(s)	422
BsaAI	YACGTR	1 cut(s)	377
BsaJI	CCNNGG	2 cut(s)	170, 179
Bsc4I	CCNNNNNNNGG	2 cut(s)	325, 458
Bse1I	ACTGG	2 cut(s)	97, 463
BseBI	CCWGG	2 cut(s)	172, 248
BseCI	ATCGAT	1 cut(s)	422
BseDI	CCNNGG	2 cut(s)	170, 179
BseGI	GGATG	2 cut(s)	142, 343
BseLI	CCNNNNNNNGG	2 cut(s)	325, 458
BseNI	ACTGG	2 cut(s)	97, 463
BseRI	GAGGAG	2 cut(s)	281, 341
BseXI	GCAGC	5 cut(s)	370, 376, 382, 398, 404
BshFI	GGCC	2 cut(s)	184, 474
BshVI	ATCGAT	1 cut(s)	422
BsiSI	CCGG	1 cut(s)	146
BslFI	GGGAC	1 cut(s)	462
BslI	CCNNNNNNNGG	2 cut(s)	325, 458
BsmAI	GTCTC	1 cut(s)	81
BsmFI	GGGAC	1 cut(s)	462
BsnI	GGCC	2 cut(s)	184, 474
Bsp1286I	GDGCHC	1 cut(s)	418
Bsp1407I	TGTACA	1 cut(s)	361
BspANI	GGCC	2 cut(s)	184, 474
BspDI	ATCGAT	1 cut(s)	422
BspLI	GGNNCC	3 cut(s)	185, 417, 450
BspMAI	CTGCAG	3 cut(s)	324, 388, 394
BspMI	ACCTGC	1 cut(s)	460
BsrGI	TGTACA	1 cut(s)	361
BsrI	ACTGG	2 cut(s)	97, 463
BssECI	CCNNGG	2 cut(s)	170, 179
BssSI	CACGAG	1 cut(s)	197
BssT1I	CCWWGG	1 cut(s)	179
Bst2BI	CACGAG	1 cut(s)	197
Bst2UI	CCWGG	2 cut(s)	172, 248
Bst4CI	ACNGT	2 cut(s)	152, 221
BstAUI	TGTACA	1 cut(s)	361
BstBAI	YACGTR	1 cut(s)	377
BstC8I	GCNNGC	2 cut(s)	320, 472
BstENI	CCTNNNNNAGG	1 cut(s)	323
BstF5I	GGATG	2 cut(s)	142, 343
BstMAI	GTCTC	1 cut(s)	81
BstMWI	GCNNNNNNNGC	4 cut(s)	130, 389, 392, 395
BstNI	CCWGG	2 cut(s)	172, 248
BstSCI	CCNGG	2 cut(s)	170, 246
BstSFI	CTRYAG	3 cut(s)	320, 384, 390
BstV1I	GCAGC	5 cut(s)	370, 376, 382, 398, 404
Bsu15I	ATCGAT	1 cut(s)	422
BsuI	GTATCC	1 cut(s)	168
BsuRI	GGCC	2 cut(s)	184, 474
BsuTUI	ATCGAT	1 cut(s)	422
BtsCI	GGATG	2 cut(s)	142, 343
BtsIMutI	CAGTG	5 cut(s)	90, 157, 226, 411, 456
BveI	ACCTGC	1 cut(s)	460
Cac8I	GCNNGC	2 cut(s)	320, 472
Cfr13I	GGNCC	3 cut(s)	44, 183, 449
ClaI	ATCGAT	1 cut(s)	422
Csp6I	GTAC	1 cut(s)	362
CviAII	CATG	1 cut(s)	7
CviJI	RGCY	6 cut(s)	145, 184, 389, 395, 416, 474
CviKI_1	RGCY	6 cut(s)	145, 184, 389, 395, 416, 474
CviQI	GTAC	1 cut(s)	362
Eco130I	CCWWGG	1 cut(s)	179
Eco24I	GRGCYC	1 cut(s)	418
Eco32I	GATATC	1 cut(s)	262
Eco47I	GGWCC	2 cut(s)	44, 449
EcoNI	CCTNNNNNAGG	1 cut(s)	323
EcoO109I	RGGNCCY	3 cut(s)	44, 183, 449
EcoRII	CCWGG	2 cut(s)	170, 246
EcoRV	GATATC	1 cut(s)	262
EcoT14I	CCWWGG	1 cut(s)	179
EcoT38I	GRGCYC	1 cut(s)	418
ErhI	CCWWGG	1 cut(s)	179
FaeI	CATG	1 cut(s)	10
FaiI	YATR	7 cut(s)	8, 39, 167, 192, 354, 366, 374
FaqI	GGGAC	1 cut(s)	462
FatI	CATG	1 cut(s)	6
Fnu4HI	GCNGC	5 cut(s)	384, 387, 390, 393, 396
FokI	GGATG	2 cut(s)	149, 350
FriOI	GRGCYC	1 cut(s)	418
Fsp4HI	GCNGC	5 cut(s)	384, 387, 390, 393, 396
GluI	GCNGC	5 cut(s)	384, 387, 390, 393, 396
GsuI	CTGGAG	1 cut(s)	230
HaeIII	GGCC	2 cut(s)	184, 474
HapII	CCGG	1 cut(s)	146
Hin1II	CATG	1 cut(s)	10
HinfI	GANTC	1 cut(s)	101
HpaII	CCGG	1 cut(s)	146
HphI	GGTGA	2 cut(s)	204, 284
Hpy166II	GTNNAC	1 cut(s)	442
Hpy188I	TCNGA	2 cut(s)	256, 297
Hpy8I	GTNNAC	1 cut(s)	442
HpyCH4III	ACNGT	2 cut(s)	152, 221
HpyCH4IV	ACGT	1 cut(s)	376
HpyCH4V	TGCA	4 cut(s)	322, 386, 392, 470
HpyF10VI	GCNNNNNNNGC	4 cut(s)	130, 389, 392, 395
HpySE526I	ACGT	1 cut(s)	376
Hsp92II	CATG	1 cut(s)	10
LmnI	GCTCC	2 cut(s)	249, 421
Lsp1109I	GCAGC	5 cut(s)	370, 376, 382, 398, 404
MaeII	ACGT	1 cut(s)	376
MboII	GAAGA	1 cut(s)	323
MhlI	GDGCHC	1 cut(s)	418
MluCI	AATT	1 cut(s)	27
MlyI	GAGTC	1 cut(s)	95
MnlI	CCTC	8 cut(s)	57, 193, 198, 250, 259, 262, 319, 423
MseI	TTAA	1 cut(s)	434
MspA1I	CMGCKG	2 cut(s)	389, 395
MspI	CCGG	1 cut(s)	146
MspR9I	CCNGG	2 cut(s)	172, 248
MvaI	CCWGG	2 cut(s)	172, 248
MwoI	GCNNNNNNNGC	4 cut(s)	130, 389, 392, 395
NlaIII	CATG	1 cut(s)	10
NlaIV	GGNNCC	3 cut(s)	185, 417, 450
PkrI	GCNGC	5 cut(s)	385, 388, 391, 394, 397
PleI	GAGTC	1 cut(s)	95
PpsI	GAGTC	1 cut(s)	95
Ppu21I	YACGTR	1 cut(s)	377
PpuMI	RGGWCCY	2 cut(s)	44, 449
Psp5II	RGGWCCY	2 cut(s)	44, 449
Psp6I	CCWGG	2 cut(s)	170, 246
PspGI	CCWGG	2 cut(s)	170, 246
PspN4I	GGNNCC	3 cut(s)	185, 417, 450
PspPI	GGNCC	3 cut(s)	44, 183, 449
PspPPI	RGGWCCY	2 cut(s)	44, 449
PstI	CTGCAG	3 cut(s)	324, 388, 394
PvuII	CAGCTG	2 cut(s)	389, 395
RsaI	GTAC	1 cut(s)	363
RsaNI	GTAC	1 cut(s)	362
SaqAI	TTAA	1 cut(s)	434
SatI	GCNGC	5 cut(s)	384, 387, 390, 393, 396
Sau96I	GGNCC	3 cut(s)	44, 183, 449
SbfI	CCTGCAGG	1 cut(s)	324
SchI	GAGTC	1 cut(s)	95
ScrFI	CCNGG	2 cut(s)	172, 248
SdaI	CCTGCAGG	1 cut(s)	324
SduI	GDGCHC	1 cut(s)	418
SetI	ASST	7 cut(s)	46, 252, 379, 391, 397, 434, 454
SfcI	CTRYAG	3 cut(s)	320, 384, 390
SinI	GGWCC	2 cut(s)	44, 449
Sse8387I	CCTGCAGG	1 cut(s)	324
Sse9I	AATT	1 cut(s)	27
StyD4I	CCNGG	2 cut(s)	170, 246
StyI	CCWWGG	1 cut(s)	179
TaaI	ACNGT	2 cut(s)	152, 221
TaiI	ACGT	1 cut(s)	379
TaqI	TCGA	3 cut(s)	49, 264, 422
TasI	AATT	1 cut(s)	27
TatI	WGTACW	1 cut(s)	361
Tru1I	TTAA	1 cut(s)	434
Tru9I	TTAA	1 cut(s)	434
TscAI	CASTG	5 cut(s)	97, 157, 226, 411, 463
TseI	GCWGC	5 cut(s)	383, 386, 389, 392, 395
TspDTI	ATGAA	4 cut(s)	90, 354, 363, 390
TspGWI	ACGGA	2 cut(s)	99, 113
TspRI	CASTG	5 cut(s)	97, 157, 226, 411, 463
VpaK11BI	GGWCC	2 cut(s)	44, 449
XagI	CCTNNNNNAGG	1 cut(s)	323
XapI	RAATTY	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.