Rh6BG338800

DUF21 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0002295
Physical Location & Seq
Forward (+)
57126944 .. 57130447
3504 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG338800.1

Sequence Viewer

Length: 1155 bp
ATGATGACGTGGAACGGAGCCCGCAACATAGTGCTCGACTCGGATGACGTTCCGTTCGGGACCGGTGAGTGGTACCTCTACGCCGGAATCTCTTGCGTGCTGGTTTTGTTCGCCGGAATCATGTCCGGCCTTACGCTCGGATTGATGTCGCTCAATCTCGTCGACCTCGAGATTCTCCAGCGGAGCGGTTCCTCCGATCAGAAAAAGCAAGCCGCTGCGATTCTACCTGTGGTGAAAAAGCAGCACCAGCTTTTGGTCACTTTGCTTCTCTGCAATGCTTGTGCCATGGAGGCTGGAAAAGGAGGTGAACTAACACATGATGAGACAACGATCATCAGTGGAGCGCTAGATTTAACTGAAAAGACTGCTGAGGAGGCTATGACACCTATTGAATCAACATTTTCCTTGGATGTTAATTCAAAGTTAGACTGGGAAGCAATTGGGAAAATTCTTGCACGTGGTCATAGTAGAGTCCCTGTCTATTCTGGACATCCCAAAAACATAATCGGCCTCTTACTGGTGAAAAGTCTCCTCACAGTACGAGCAGAAACAGAGACTCCAGTTAGTGCAGTTTCCATTCGTAGAATGCCTAGGGTTCCAGCCGATATGCCTTTGTATGATATACTTAATGAGTTTCAAAAAGGAAGCAGTCACCTGGCTGCTGTAGTGAAGATCAAAGGAAAAACCAAGAATCCTCTACTTTTTGCTGATAGAGAGAAACTTGAGGAGGCCAGACCAACCAATGGATGTGTTGCCATTGATGTTGATAAACGTCCAAGGTCTCTGACAAACATGCCAACTGTTCAAGAAAATGATGCTACTACAAATGGCATTTCAAATTCATCAGATGATATTGAAGATGGGGAGGTGATTGGAATCATAACCCTGGAGGATGTTTTTGAAGAACTTCTGCAAGAAGAAATTGTAGATGAGACAGATGTATATATTGATGTACATAAGAGGATACGTGTGGCTGCTGCTGCAGCTGCTTCATCCATGTCCAGAGCTCAGTCAAGTCAGAAGTTGATTAGTCAAAAGCATGCAGGAGCTACAAATAAGCATGGACAAACCCCGAAGAAGTCTGGGGAGGATGGTGCACATTCGACGAGGTTTTCAGGGAGTTCACGGGAGCCTCTTCTAGGTGTTATAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03022 ko05169 ko05203 map03022 map05169 map05203
Pfam Domains
Protein Families
DUF21

Protein Analysis

384

Amino Acids

41.57

Weight (kDa)

5.57

Isoelectric Point (pI)

44.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CNNM PF01595 30 - 97 4.4e-10 Cyclin M transmembrane N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1148
Acc65I GGTACC 1 cut(s) 72
AccB1I GGYRCC 1 cut(s) 72
AccB7I CCANNNNNTGG 2 cut(s) 253, 743
AccBSI CCGCTC 1 cut(s) 186
AccI GTMKAC 1 cut(s) 162
AciI CCGC 4 cut(s) 22, 181, 186, 213
AcsI RAATTY 2 cut(s) 447, 838
AcvI CACGTG 1 cut(s) 458
AfaI GTAC 3 cut(s) 74, 540, 954
AfeI AGCGCT 1 cut(s) 345
AfiI CCNNNNNNNGG 5 cut(s) 69, 253, 517, 743, 1139
AflIII ACRYGT 1 cut(s) 967
AgeI ACCGGT 1 cut(s) 62
AgsI TTSAA 7 cut(s) 392, 420, 638, 806, 837, 857, 902
AjiI CACGTC 1 cut(s) 9
AjnI CCWGG 2 cut(s) 654, 885
AluBI AGCT 4 cut(s) 250, 986, 1007, 1049
AluI AGCT 4 cut(s) 250, 986, 1007, 1049
Alw21I GWGCWC 3 cut(s) 36, 1009, 1099
Alw26I GTCTC 5 cut(s) 317, 533, 548, 786, 926
Alw44I GTGCAC 1 cut(s) 1095
Ama87I CYCGRG 1 cut(s) 167
Aor51HI AGCGCT 1 cut(s) 345
AoxI GGCC 3 cut(s) 127, 508, 729
ApaLI GTGCAC 1 cut(s) 1095
ApeKI GCWGC 8 cut(s) 215, 241, 659, 974, 977, 980, 983, 986
ApoI RAATTY 2 cut(s) 447, 838
ArsI GACNNNNNNTTYG 2 cut(s) 38, 70
AsiGI ACCGGT 1 cut(s) 62
Asp700I GAANNNNTTC 1 cut(s) 906
Asp718I GGTACC 1 cut(s) 72
AspA2I CCTAGG 1 cut(s) 590
AspLEI GCGC 1 cut(s) 346
AspS9I GGNCC 1 cut(s) 60
AsuHPI GGTGA 6 cut(s) 77, 244, 317, 532, 644, 880
AvaI CYCGRG 1 cut(s) 167
AvaII GGWCC 1 cut(s) 60
AvrII CCTAGG 1 cut(s) 590
BaeGI GKGCMC 1 cut(s) 1099
BanI GGYRCC 1 cut(s) 72
BanII GRGCYC 2 cut(s) 22, 1009
BbrPI CACGTG 1 cut(s) 458
Bbv12I GWGCWC 3 cut(s) 36, 1009, 1099
BbvCI CCTCAGC 1 cut(s) 369
BbvI GCAGC 8 cut(s) 202, 253, 646, 961, 964, 967, 973, 995
BccI CCATC 2 cut(s) 854, 1085
BciT130I CCWGG 2 cut(s) 656, 887
BciVI GTATCC 1 cut(s) 957
BcoDI GTCTC 5 cut(s) 317, 533, 548, 786, 926
BfaI CTAG 3 cut(s) 347, 591, 1139
BfmI CTRYAG 2 cut(s) 663, 981
BfoI RGCGCY 1 cut(s) 347
BfuI GTATCC 1 cut(s) 957
BglI GCCNNNNNGGC 1 cut(s) 290
BisI GCNGC 9 cut(s) 213, 216, 242, 660, 975, 978, 981, 984, 987
BlnI CCTAGG 1 cut(s) 590
BlsI GCNGC 9 cut(s) 214, 217, 243, 661, 976, 979, 982, 985, 988
Bme1390I CCNGG 2 cut(s) 656, 887
Bme18I GGWCC 1 cut(s) 60
BmeT110I CYCGRG 1 cut(s) 167
BmgBI CACGTC 1 cut(s) 9
BmgT120I GGNCC 1 cut(s) 60
BmiI GGNNCC 6 cut(s) 19, 61, 74, 190, 597, 1131
BmrFI CCNGG 2 cut(s) 656, 887
BmrI ACTGGG 1 cut(s) 439
BmsI GCATC 1 cut(s) 805
BmuI ACTGGG 1 cut(s) 439
BpmI CTGGAG 3 cut(s) 161, 543, 908
Bpu10I CCTNAGC 1 cut(s) 369
BpuEI CTTGAG 1 cut(s) 743
BsaAI YACGTR 2 cut(s) 458, 968
BsaBI GATNNNNATC 1 cut(s) 875
BsaI GGTCTC 1 cut(s) 786
BsaJI CCNNGG 5 cut(s) 285, 405, 590, 776, 885
BsaWI WCCGGW 1 cut(s) 62
BsaXI ACNNNNNCTCC 2 cut(s) 541, 571
Bsc4I CCNNNNNNNGG 5 cut(s) 69, 253, 517, 743, 1139
Bse118I RCCGGY 1 cut(s) 62
Bse1I ACTGG 3 cut(s) 434, 522, 560
Bse3DI GCAATG 1 cut(s) 280
Bse8I GATNNNNATC 1 cut(s) 875
BseBI CCWGG 2 cut(s) 656, 887
BseDI CCNNGG 5 cut(s) 285, 405, 590, 776, 885
BseGI GGATG 7 cut(s) 49, 415, 490, 752, 898, 992, 1096
BseJI GATNNNNATC 1 cut(s) 875
BseLI CCNNNNNNNGG 5 cut(s) 69, 253, 517, 743, 1139
BseMI GCAATG 1 cut(s) 280
BseMII CTCAG 2 cut(s) 360, 1022
BseNI ACTGG 3 cut(s) 434, 522, 560
BseRI GAGGAG 3 cut(s) 386, 521, 740
BseSI GKGCMC 1 cut(s) 1099
BseXI GCAGC 8 cut(s) 202, 253, 646, 961, 964, 967, 973, 995
BsgI GTGCAG 1 cut(s) 588
BshFI GGCC 3 cut(s) 129, 510, 731
BshNI GGYRCC 1 cut(s) 72
BshTI ACCGGT 1 cut(s) 62
BsiHKAI GWGCWC 3 cut(s) 36, 1009, 1099
BsiHKCI CYCGRG 1 cut(s) 167
BsiSI CCGG 4 cut(s) 63, 84, 114, 126
BslFI GGGAC 2 cut(s) 73, 458
BslI CCNNNNNNNGG 5 cut(s) 69, 253, 517, 743, 1139
BsmAI GTCTC 5 cut(s) 317, 533, 548, 786, 926
BsmFI GGGAC 2 cut(s) 73, 458
BsmI GAATGC 1 cut(s) 591
BsnI GGCC 3 cut(s) 129, 510, 731
Bso31I GGTCTC 1 cut(s) 786
BsoBI CYCGRG 1 cut(s) 167
Bsp1286I GDGCHC 4 cut(s) 22, 36, 1009, 1099
Bsp1407I TGTACA 1 cut(s) 952
Bsp143I GATC 3 cut(s) 196, 330, 672
Bsp19I CCATGG 1 cut(s) 285
BspACI CCGC 4 cut(s) 22, 181, 186, 213
BspANI GGCC 3 cut(s) 129, 510, 731
BspCNI CTCAG 2 cut(s) 361, 1021
BspLI GGNNCC 6 cut(s) 19, 61, 74, 190, 597, 1131
BspMAI CTGCAG 1 cut(s) 985
BspT107I GGYRCC 1 cut(s) 72
BspTNI GGTCTC 1 cut(s) 786
BsrBI CCGCTC 1 cut(s) 186
BsrDI GCAATG 1 cut(s) 280
BsrFI RCCGGY 1 cut(s) 62
BsrGI TGTACA 1 cut(s) 952
BsrI ACTGG 3 cut(s) 434, 522, 560
BssAI RCCGGY 1 cut(s) 62
BssECI CCNNGG 5 cut(s) 285, 405, 590, 776, 885
BssMI GATC 3 cut(s) 196, 330, 672
BssT1I CCWWGG 4 cut(s) 285, 405, 590, 776
Bst2UI CCWGG 2 cut(s) 656, 887
Bst4CI ACNGT 2 cut(s) 538, 802
Bst6I CTCTTC 1 cut(s) 1140
BstAUI TGTACA 1 cut(s) 952
BstBAI YACGTR 2 cut(s) 458, 968
BstC8I GCNNGC 4 cut(s) 22, 98, 210, 1041
BstDEI CTNAG 2 cut(s) 369, 1008
BstDSI CCRYGG 1 cut(s) 285
BstENI CCTNNNNNAGG 1 cut(s) 1137
BstF5I GGATG 7 cut(s) 49, 415, 490, 752, 898, 992, 1096
BstH2I RGCGCY 1 cut(s) 347
BstHHI GCGC 1 cut(s) 346
BstKTI GATC 3 cut(s) 199, 333, 675
BstMAI GTCTC 5 cut(s) 317, 533, 548, 786, 926
BstMBI GATC 3 cut(s) 196, 330, 672
BstMWI GCNNNNNNNGC 6 cut(s) 247, 290, 374, 980, 983, 986
BstNI CCWGG 2 cut(s) 656, 887
BstNSI RCATGY 2 cut(s) 796, 1043
BstSCI CCNGG 2 cut(s) 654, 885
BstSFI CTRYAG 2 cut(s) 663, 981
BstSLI GKGCMC 1 cut(s) 1099
BstV1I GCAGC 8 cut(s) 202, 253, 646, 961, 964, 967, 973, 995
BsuI GTATCC 1 cut(s) 957
BsuRI GGCC 3 cut(s) 129, 510, 731
BtgI CCRYGG 1 cut(s) 285
BtrI CACGTC 1 cut(s) 9
BtsCI GGATG 7 cut(s) 49, 415, 490, 752, 898, 992, 1096
BtsIMutI CAGTG 1 cut(s) 343
Cac8I GCNNGC 4 cut(s) 22, 98, 210, 1041
CfoI GCGC 1 cut(s) 346
Cfr10I RCCGGY 1 cut(s) 62
Cfr13I GGNCC 1 cut(s) 60
Csp6I GTAC 3 cut(s) 73, 539, 953
CspAI ACCGGT 1 cut(s) 62
CviAII CATG 7 cut(s) 121, 286, 317, 793, 997, 1040, 1061
CviQI GTAC 3 cut(s) 73, 539, 953
DdeI CTNAG 2 cut(s) 369, 1008
DpnI GATC 3 cut(s) 198, 332, 674
DpnII GATC 3 cut(s) 196, 330, 672
Eam1104I CTCTTC 1 cut(s) 1140
EarI CTCTTC 1 cut(s) 1140
Ecl136II GAGCTC 1 cut(s) 1007
Eco130I CCWWGG 4 cut(s) 285, 405, 590, 776
Eco24I GRGCYC 2 cut(s) 22, 1009
Eco31I GGTCTC 1 cut(s) 786
Eco47I GGWCC 1 cut(s) 60
Eco47III AGCGCT 1 cut(s) 345
Eco53kI GAGCTC 1 cut(s) 1007
Eco72I CACGTG 1 cut(s) 458
Eco88I CYCGRG 1 cut(s) 167
EcoICRI GAGCTC 1 cut(s) 1007
EcoNI CCTNNNNNAGG 1 cut(s) 1137
EcoRII CCWGG 2 cut(s) 654, 885
EcoT14I CCWWGG 4 cut(s) 285, 405, 590, 776
EcoT38I GRGCYC 2 cut(s) 22, 1009
ErhI CCWWGG 4 cut(s) 285, 405, 590, 776
FaeI CATG 7 cut(s) 124, 289, 320, 796, 1000, 1043, 1064
FaqI GGGAC 2 cut(s) 73, 458
FatI CATG 7 cut(s) 120, 285, 316, 792, 996, 1039, 1060
FauI CCCGC 1 cut(s) 29
FblI GTMKAC 1 cut(s) 162
Fnu4HI GCNGC 9 cut(s) 213, 216, 242, 660, 975, 978, 981, 984, 987
FokI GGATG 7 cut(s) 56, 422, 477, 759, 905, 979, 1103
FriOI GRGCYC 2 cut(s) 22, 1009
Fsp4HI GCNGC 9 cut(s) 213, 216, 242, 660, 975, 978, 981, 984, 987
FspBI CTAG 3 cut(s) 347, 591, 1139
GlaI GCGC 1 cut(s) 345
GluI GCNGC 9 cut(s) 213, 216, 242, 660, 975, 978, 981, 984, 987
GsuI CTGGAG 3 cut(s) 161, 543, 908
HaeII RGCGCY 1 cut(s) 347
HaeIII GGCC 3 cut(s) 129, 510, 731
HapII CCGG 4 cut(s) 63, 84, 114, 126
HhaI GCGC 1 cut(s) 346
Hin1II CATG 7 cut(s) 124, 289, 320, 796, 1000, 1043, 1064
Hin6I GCGC 1 cut(s) 344
HinP1I GCGC 1 cut(s) 344
HincII GTYRAC 1 cut(s) 163
HindII GTYRAC 1 cut(s) 163
HpaII CCGG 4 cut(s) 63, 84, 114, 126
HphI GGTGA 6 cut(s) 77, 244, 317, 532, 644, 880
Hpy166II GTNNAC 4 cut(s) 163, 308, 1097, 1124
Hpy188I TCNGA 7 cut(s) 43, 140, 196, 201, 786, 847, 1020
Hpy188III TCNNGA 5 cut(s) 58, 169, 486, 806, 1002
Hpy8I GTNNAC 4 cut(s) 163, 308, 1097, 1124
Hpy99I CGWCG 2 cut(s) 164, 1108
HpyCH4III ACNGT 2 cut(s) 538, 802
HpyCH4IV ACGT 5 cut(s) 8, 48, 457, 772, 967
HpyCH4V TGCA 7 cut(s) 273, 455, 569, 913, 983, 1043, 1097
HpyF10VI GCNNNNNNNGC 6 cut(s) 247, 290, 374, 980, 983, 986
HpyF3I CTNAG 2 cut(s) 369, 1008
HpySE526I ACGT 5 cut(s) 8, 48, 457, 772, 967
Hsp92II CATG 7 cut(s) 124, 289, 320, 796, 1000, 1043, 1064
HspAI GCGC 1 cut(s) 344
KpnI GGTACC 1 cut(s) 76
Kzo9I GATC 3 cut(s) 196, 330, 672
LmnI GCTCC 5 cut(s) 17, 183, 341, 1046, 1129
Lsp1109I GCAGC 8 cut(s) 202, 253, 646, 961, 964, 967, 973, 995
LweI GCATC 1 cut(s) 805
MaeI CTAG 3 cut(s) 347, 591, 1139
MaeII ACGT 5 cut(s) 8, 48, 457, 772, 967
MaeIII GTNAC 2 cut(s) 256, 650
MalI GATC 3 cut(s) 198, 332, 674
MbiI CCGCTC 1 cut(s) 186
MboI GATC 3 cut(s) 196, 330, 672
MboII GAAGA 6 cut(s) 682, 869, 914, 929, 1087, 1127
MfeI CAATTG 1 cut(s) 438
MhlI GDGCHC 4 cut(s) 22, 36, 1009, 1099
MluCI AATT 5 cut(s) 415, 438, 447, 838, 921
MlyI GAGTC 3 cut(s) 32, 480, 550
MroXI GAANNNNTTC 1 cut(s) 906
MseI TTAA 3 cut(s) 353, 414, 627
MspA1I CMGCKG 3 cut(s) 181, 215, 986
MspI CCGG 4 cut(s) 63, 84, 114, 126
MspR9I CCNGG 2 cut(s) 656, 887
MunI CAATTG 1 cut(s) 438
Mva1269I GAATGC 1 cut(s) 591
MvaI CCWGG 2 cut(s) 656, 887
MwoI GCNNNNNNNGC 6 cut(s) 247, 290, 374, 980, 983, 986
NcoI CCATGG 1 cut(s) 285
NdeII GATC 3 cut(s) 196, 330, 672
NlaIII CATG 7 cut(s) 124, 289, 320, 796, 1000, 1043, 1064
NlaIV GGNNCC 6 cut(s) 19, 61, 74, 190, 597, 1131
NmuCI GTSAC 2 cut(s) 256, 650
NspI RCATGY 2 cut(s) 796, 1043
PaeI GCATGC 1 cut(s) 1043
PaeR7I CTCGAG 1 cut(s) 167
PcsI WCGNNNNNNNCGW 1 cut(s) 165
PctI GAATGC 1 cut(s) 591
PdmI GAANNNNTTC 1 cut(s) 906
PfeI GAWTC 7 cut(s) 87, 117, 172, 220, 392, 691, 876
PflMI CCANNNNNTGG 2 cut(s) 253, 743
PinAI ACCGGT 1 cut(s) 62
PkrI GCNGC 9 cut(s) 214, 217, 243, 661, 976, 979, 982, 985, 988
PleI GAGTC 3 cut(s) 32, 479, 550
PmaCI CACGTG 1 cut(s) 458
PmlI CACGTG 1 cut(s) 458
PpsI GAGTC 3 cut(s) 32, 479, 550
Ppu21I YACGTR 2 cut(s) 458, 968
PsiI TTATAA 1 cut(s) 1148
Psp124BI GAGCTC 1 cut(s) 1009
Psp6I CCWGG 2 cut(s) 654, 885
PspCI CACGTG 1 cut(s) 458
PspGI CCWGG 2 cut(s) 654, 885
PspN4I GGNNCC 6 cut(s) 19, 61, 74, 190, 597, 1131
PspPI GGNCC 1 cut(s) 60
PstI CTGCAG 1 cut(s) 985
PvuII CAGCTG 1 cut(s) 986
RsaI GTAC 3 cut(s) 74, 540, 954
RsaNI GTAC 3 cut(s) 73, 539, 953
SacI GAGCTC 1 cut(s) 1009
SalI GTCGAC 1 cut(s) 161
SaqAI TTAA 3 cut(s) 353, 414, 627
SatI GCNGC 9 cut(s) 213, 216, 242, 660, 975, 978, 981, 984, 987
Sau3AI GATC 3 cut(s) 196, 330, 672
Sau96I GGNCC 1 cut(s) 60
SchI GAGTC 3 cut(s) 32, 480, 550
ScrFI CCNGG 2 cut(s) 656, 887
SduI GDGCHC 4 cut(s) 22, 36, 1009, 1099
SfaNI GCATC 1 cut(s) 805
SfcI CTRYAG 2 cut(s) 663, 981
Sfr274I CTCGAG 1 cut(s) 167
SinI GGWCC 1 cut(s) 60
SlaI CTCGAG 1 cut(s) 167
SmlI CTYRAG 2 cut(s) 167, 722
SmoI CTYRAG 2 cut(s) 167, 722
SphI GCATGC 1 cut(s) 1043
Sse9I AATT 5 cut(s) 415, 438, 447, 838, 921
SsiI CCGC 4 cut(s) 22, 181, 186, 213
SspMI CTAG 3 cut(s) 347, 591, 1139
SstI GAGCTC 1 cut(s) 1009
StyD4I CCNGG 2 cut(s) 654, 885
StyI CCWWGG 4 cut(s) 285, 405, 590, 776
TaaI ACNGT 2 cut(s) 538, 802
TaiI ACGT 5 cut(s) 11, 51, 460, 775, 970
TaqI TCGA 4 cut(s) 36, 162, 168, 1103
TasI AATT 5 cut(s) 415, 438, 447, 838, 921
TatI WGTACW 1 cut(s) 952
TauI GCSGC 1 cut(s) 215
TfiI GAWTC 7 cut(s) 87, 117, 172, 220, 392, 691, 876
Tru1I TTAA 3 cut(s) 353, 414, 627
Tru9I TTAA 3 cut(s) 353, 414, 627
TscAI CASTG 1 cut(s) 343
TseFI GTSAC 2 cut(s) 256, 650
TseI GCWGC 8 cut(s) 215, 241, 659, 974, 977, 980, 983, 986
Tsp45I GTSAC 2 cut(s) 256, 650
TspDTI ATGAA 2 cut(s) 831, 981
TspGWI ACGGA 2 cut(s) 30, 42
TspRI CASTG 1 cut(s) 343
Van91I CCANNNNNTGG 2 cut(s) 253, 743
VneI GTGCAC 1 cut(s) 1095
VpaK11BI GGWCC 1 cut(s) 60
XagI CCTNNNNNAGG 1 cut(s) 1137
XapI RAATTY 2 cut(s) 447, 838
XceI RCATGY 2 cut(s) 796, 1043
XhoI CTCGAG 1 cut(s) 167
XmaJI CCTAGG 1 cut(s) 590
XmiI GTMKAC 1 cut(s) 162
XmnI GAANNNNTTC 1 cut(s) 906
XspI CTAG 3 cut(s) 347, 591, 1139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.