Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001879.1

Orthogroup ID

OG0002295

Physical Location & Seq

Genomic Coordinates Reverse (-)

168933 .. 170172

Gene Structure 1240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001879.1_g000044.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

atgccactgtatgatatattgaatgagtttcaaaagggcagcagtcatatggctgctgtggtaaaggccagagggaaaagtaagactcatccacccacgattgacggagaaaataatgaaggaaacaaaattgctggcatggactcccaactgactactccattgctatccaagcaggatggaaagccagaccatgttgttgttgacgtgcccaagataccaaagcccactagtatgaaaaaggaagcactctcacactacaatgttggagaaacaattggccccccttcgtcagaggatattgaggatggtgaagtcattggtatcatcaccctggaagatgtatttgaagaactcctgcaggaggaaattgtcgatgaaacggatgaatatgttgatgtacataaaagaatacgcgttgctgcagctgcagctgcttcatcagtggcgcgagctccatcactgcggaggttaaatgtcaacaagggaccaggagcccaaactaagcaagtaaccccgaagaaatctactgatgaattggctgcaaggccacacgggacttttgctgatggaaacaagagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF21

Protein Analysis

194

Amino Acids

20.98

Weight (kDa)

5.71

Isoelectric Point (pI)

45.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002295)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14230 AT4G14240 AT4G14240
fragaria_vesca	FvH4_2g23860 FvH4_2g23860 FvH4_4g14430 FvH4_4g14430 FvH4_4g14430 FvH4_4g14430
malus_domestica	MD03G1268300.v1.1 MD11G1124600.v1.1 MD11G1289100.v1.1 MD13G1182700.v1.1 MD16G1183100.v1.1
prunus_persica	Prupe.1G150600_v2.0.a1 Prupe.1G150600_v2.0.a1 Prupe.8G244000_v2.0.a1
pyrus_communis	pycom03g21420 pycom11g25650 pycom13g15760 pycom16g15380 pycom16g15390
rosa_chinensis	RchiOBHm_Chr4g0418451 RchiOBHm_Chr6g0291461
rosa_laevigata	RLG00000007864
rosa_multiflora	Rmu_sc0001266.1_g000005 Rmu_sc0001879.1_g000044
rosa_roxburghii	Rroxscaffold_5G00361680 Rroxscaffold_7G00176030
rosa_rugosa	Rorug04G0153300 Rorug06G0219700
rosa_samantha	Rh4AG214500 Rh4BG215800 Rh4CG226200 Rh4DG213100 Rh6AG331900 Rh6BG338800 Rh6DG332100 Rh6DG332200
rosa_wichuraiana	Rw0G010040 Rw4G018230 Rw6G028830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	417, 451
AciI	CCGC	1 cut(s)	466
AfaI	GTAC	1 cut(s)	402
AfiI	CCNNNNNNNGG	1 cut(s)	364
AflIII	ACRYGT	1 cut(s)	415
AgsI	TTSAA	3 cut(s)	22, 32, 350
AhlI	ACTAGT	1 cut(s)	230
AjiI	CACGTC	1 cut(s)	208
AjnI	CCWGG	2 cut(s)	333, 490
AluBI	AGCT	3 cut(s)	428, 434, 455
AluI	AGCT	3 cut(s)	428, 434, 455
Alw21I	GWGCWC	1 cut(s)	457
AoxI	GGCC	3 cut(s)	66, 280, 548
ApeKI	GCWGC	8 cut(s)	39, 53, 422, 425, 428, 431, 434, 542
AspLEI	GCGC	1 cut(s)	451
AspS9I	GGNCC	2 cut(s)	281, 488
AsuHPI	GGTGA	2 cut(s)	322, 323
AvaII	GGWCC	1 cut(s)	488
BaeGI	GKGCMC	1 cut(s)	213
BanII	GRGCYC	2 cut(s)	457, 499
Bbv12I	GWGCWC	1 cut(s)	457
BbvI	GCAGC	8 cut(s)	40, 51, 409, 415, 421, 437, 443, 529
BccI	CCATC	4 cut(s)	173, 302, 466, 563
BciT130I	CCWGG	2 cut(s)	335, 492
BcuI	ACTAGT	1 cut(s)	230
BfaI	CTAG	1 cut(s)	231
BfmI	CTRYAG	3 cut(s)	359, 423, 429
BisI	GCNGC	8 cut(s)	40, 54, 423, 426, 429, 432, 435, 543
BlsI	GCNGC	8 cut(s)	41, 55, 424, 427, 430, 433, 436, 544
Bme1390I	CCNGG	2 cut(s)	335, 492
Bme18I	GGWCC	1 cut(s)	488
BmgBI	CACGTC	1 cut(s)	208
BmgT120I	GGNCC	2 cut(s)	281, 488
BmiI	GGNNCC	3 cut(s)	283, 489, 496
BmrFI	CCNGG	2 cut(s)	335, 492
BsaJI	CCNNGG	1 cut(s)	333
Bsc4I	CCNNNNNNNGG	1 cut(s)	364
Bse3DI	GCAATG	1 cut(s)	161
BseBI	CCWGG	2 cut(s)	335, 492
BseDI	CCNNGG	1 cut(s)	333
BseGI	GGATG	4 cut(s)	88, 184, 313, 391
BseLI	CCNNNNNNNGG	1 cut(s)	364
BseMI	GCAATG	1 cut(s)	161
BseSI	GKGCMC	1 cut(s)	213
BseXI	GCAGC	8 cut(s)	40, 51, 409, 415, 421, 437, 443, 529
Bsh1236I	CGCG	2 cut(s)	417, 451
BshFI	GGCC	3 cut(s)	68, 282, 550
BsiHKAI	GWGCWC	1 cut(s)	457
BslFI	GGGAC	2 cut(s)	501, 571
BslI	CCNNNNNNNGG	1 cut(s)	364
BsmFI	GGGAC	2 cut(s)	501, 571
BsnI	GGCC	3 cut(s)	68, 282, 550
Bsp1286I	GDGCHC	3 cut(s)	213, 457, 499
Bsp1407I	TGTACA	1 cut(s)	400
BspACI	CCGC	1 cut(s)	466
BspANI	GGCC	3 cut(s)	68, 282, 550
BspFNI	CGCG	2 cut(s)	417, 451
BspLI	GGNNCC	3 cut(s)	283, 489, 496
BspMAI	CTGCAG	3 cut(s)	363, 427, 433
BsrDI	GCAATG	1 cut(s)	161
BsrGI	TGTACA	1 cut(s)	400
BssECI	CCNNGG	1 cut(s)	333
Bst2UI	CCWGG	2 cut(s)	335, 492
Bst4CI	ACNGT	1 cut(s)	9
BstAUI	TGTACA	1 cut(s)	400
BstC8I	GCNNGC	2 cut(s)	136, 453
BstDEI	CTNAG	1 cut(s)	504
BstENI	CCTNNNNNAGG	1 cut(s)	362
BstF5I	GGATG	4 cut(s)	88, 184, 313, 391
BstFNI	CGCG	2 cut(s)	417, 451
BstHHI	GCGC	1 cut(s)	451
BstMWI	GCNNNNNNNGC	4 cut(s)	172, 428, 431, 434
BstNI	CCWGG	2 cut(s)	335, 492
BstSCI	CCNGG	2 cut(s)	333, 490
BstSFI	CTRYAG	3 cut(s)	359, 423, 429
BstSLI	GKGCMC	1 cut(s)	213
BstUI	CGCG	2 cut(s)	417, 451
BstV1I	GCAGC	8 cut(s)	40, 51, 409, 415, 421, 437, 443, 529
BsuRI	GGCC	3 cut(s)	68, 282, 550
BtrI	CACGTC	1 cut(s)	208
BtsCI	GGATG	4 cut(s)	88, 184, 313, 391
BtsI	GCAGTG	1 cut(s)	461
BtsIMutI	CAGTG	3 cut(s)	5, 450, 461
Cac8I	GCNNGC	2 cut(s)	136, 453
CfoI	GCGC	1 cut(s)	451
Cfr13I	GGNCC	2 cut(s)	281, 488
Csp6I	GTAC	1 cut(s)	401
CviAII	CATG	2 cut(s)	139, 194
CviQI	GTAC	1 cut(s)	401
DdeI	CTNAG	1 cut(s)	504
Ecl136II	GAGCTC	1 cut(s)	455
Eco24I	GRGCYC	2 cut(s)	457, 499
Eco47I	GGWCC	1 cut(s)	488
Eco53kI	GAGCTC	1 cut(s)	455
EcoICRI	GAGCTC	1 cut(s)	455
EcoNI	CCTNNNNNAGG	1 cut(s)	362
EcoRII	CCWGG	2 cut(s)	333, 490
EcoT38I	GRGCYC	2 cut(s)	457, 499
FaeI	CATG	2 cut(s)	142, 197
FaiI	YATR	9 cut(s)	12, 17, 48, 50, 140, 195, 236, 393, 405
FaqI	GGGAC	2 cut(s)	501, 571
FatI	CATG	2 cut(s)	138, 193
FauNDI	CATATG	1 cut(s)	48
Fnu4HI	GCNGC	8 cut(s)	40, 54, 423, 426, 429, 432, 435, 543
FokI	GGATG	4 cut(s)	75, 191, 320, 398
FriOI	GRGCYC	2 cut(s)	457, 499
Fsp4HI	GCNGC	8 cut(s)	40, 54, 423, 426, 429, 432, 435, 543
FspBI	CTAG	1 cut(s)	231
GlaI	GCGC	1 cut(s)	450
GluI	GCNGC	8 cut(s)	40, 54, 423, 426, 429, 432, 435, 543
HaeIII	GGCC	3 cut(s)	68, 282, 550
HhaI	GCGC	1 cut(s)	451
Hin1II	CATG	2 cut(s)	142, 197
Hin6I	GCGC	1 cut(s)	449
HinP1I	GCGC	1 cut(s)	449
HincII	GTYRAC	2 cut(s)	205, 481
HindII	GTYRAC	2 cut(s)	205, 481
HinfI	GANTC	2 cut(s)	85, 143
HphI	GGTGA	2 cut(s)	322, 323
Hpy166II	GTNNAC	2 cut(s)	205, 481
Hpy188I	TCNGA	1 cut(s)	295
Hpy8I	GTNNAC	2 cut(s)	205, 481
HpyAV	CCTTC	2 cut(s)	113, 297
HpyCH4III	ACNGT	1 cut(s)	9
HpyCH4IV	ACGT	1 cut(s)	207
HpyCH4V	TGCA	4 cut(s)	361, 425, 431, 545
HpyF10VI	GCNNNNNNNGC	4 cut(s)	172, 428, 431, 434
HpyF3I	CTNAG	1 cut(s)	504
HpySE526I	ACGT	1 cut(s)	207
Hsp92II	CATG	2 cut(s)	142, 197
HspAI	GCGC	1 cut(s)	449
LmnI	GCTCC	2 cut(s)	460, 494
Lsp1109I	GCAGC	8 cut(s)	40, 51, 409, 415, 421, 437, 443, 529
MaeI	CTAG	1 cut(s)	231
MaeII	ACGT	1 cut(s)	207
MaeIII	GTNAC	1 cut(s)	511
MboII	GAAGA	3 cut(s)	350, 362, 532
MfeI	CAATTG	1 cut(s)	276
MhlI	GDGCHC	3 cut(s)	213, 457, 499
MluCI	AATT	4 cut(s)	129, 276, 369, 536
MluI	ACGCGT	1 cut(s)	415
MlyI	GAGTC	2 cut(s)	79, 137
MmeI	TCCRAC	1 cut(s)	247
MnlI	CCTC	5 cut(s)	65, 289, 298, 358, 462
MseI	TTAA	1 cut(s)	473
MslI	CAYNNNNRTG	2 cut(s)	233, 261
MspA1I	CMGCKG	2 cut(s)	428, 434
MspR9I	CCNGG	2 cut(s)	335, 492
MunI	CAATTG	1 cut(s)	276
MvaI	CCWGG	2 cut(s)	335, 492
MvnI	CGCG	2 cut(s)	417, 451
MwoI	GCNNNNNNNGC	4 cut(s)	172, 428, 431, 434
NdeI	CATATG	1 cut(s)	48
NlaIII	CATG	2 cut(s)	142, 197
NlaIV	GGNNCC	3 cut(s)	283, 489, 496
PkrI	GCNGC	8 cut(s)	41, 55, 424, 427, 430, 433, 436, 544
PleI	GAGTC	2 cut(s)	79, 137
PpsI	GAGTC	2 cut(s)	79, 137
Psp124BI	GAGCTC	1 cut(s)	457
Psp6I	CCWGG	2 cut(s)	333, 490
PspGI	CCWGG	2 cut(s)	333, 490
PspN4I	GGNNCC	3 cut(s)	283, 489, 496
PspPI	GGNCC	2 cut(s)	281, 488
PstI	CTGCAG	3 cut(s)	363, 427, 433
PvuII	CAGCTG	2 cut(s)	428, 434
RsaI	GTAC	1 cut(s)	402
RsaNI	GTAC	1 cut(s)	401
RseI	CAYNNNNRTG	2 cut(s)	233, 261
SacI	GAGCTC	1 cut(s)	457
SaqAI	TTAA	1 cut(s)	473
SatI	GCNGC	8 cut(s)	40, 54, 423, 426, 429, 432, 435, 543
Sau96I	GGNCC	2 cut(s)	281, 488
SbfI	CCTGCAGG	1 cut(s)	363
SchI	GAGTC	2 cut(s)	79, 137
ScrFI	CCNGG	2 cut(s)	335, 492
SdaI	CCTGCAGG	1 cut(s)	363
SduI	GDGCHC	3 cut(s)	213, 457, 499
SetI	ASST	5 cut(s)	210, 430, 436, 457, 473
SfcI	CTRYAG	3 cut(s)	359, 423, 429
SinI	GGWCC	1 cut(s)	488
SmiMI	CAYNNNNRTG	2 cut(s)	233, 261
SpeI	ACTAGT	1 cut(s)	230
Sse8387I	CCTGCAGG	1 cut(s)	363
Sse9I	AATT	4 cut(s)	129, 276, 369, 536
SsiI	CCGC	1 cut(s)	466
SspMI	CTAG	1 cut(s)	231
SstI	GAGCTC	1 cut(s)	457
StyD4I	CCNGG	2 cut(s)	333, 490
TaaI	ACNGT	1 cut(s)	9
TaiI	ACGT	1 cut(s)	210
TaqI	TCGA	1 cut(s)	375
TasI	AATT	4 cut(s)	129, 276, 369, 536
TatI	WGTACW	1 cut(s)	400
Tru1I	TTAA	1 cut(s)	473
Tru9I	TTAA	1 cut(s)	473
TscAI	CASTG	3 cut(s)	12, 450, 468
TseI	GCWGC	8 cut(s)	39, 53, 422, 425, 428, 431, 434, 542
TspDTI	ATGAA	6 cut(s)	132, 251, 393, 402, 429, 549
TspGWI	ACGGA	2 cut(s)	120, 398
TspRI	CASTG	3 cut(s)	12, 450, 468
VpaK11BI	GGWCC	1 cut(s)	488
XagI	CCTNNNNNAGG	1 cut(s)	362
XspI	CTAG	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.