Rorug04G0153300

DUF21 domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Forward (+)
26932203 .. 26932694
492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0153300.1

Sequence Viewer

Length: 492 bp
ATGGAGAAGAGTTTTAGGGATTGTTCAATCTCAGCTGGAGGGGGAACTAGTTCTACTGGTGTTGGTAGATCCATTAGTCACAATTTTGGGTCATGGGTCGGCTGCAGTGTTGACCCATATTCCTCCTCATCCTACACTACTAGTACTAGTACTACTTTCTTTGACATGAATGAAGAACAAACTTTCATGGAACAACGAGGAGAAGATCACCAGGAGATTGAAACCCTTCCACTGTTCTCCATGCACGGTGAGGACATCTTTGGCAACATGAAGACTACATTTGAGGGAGGTGGCGGCTACAACGGTGGCTCTTGCACTTCCCTTAAGCTCAGCCTCAACTCCTACGGCTCGACCCTATTTTCCCGCGAAGGTGTTTTCTCTGAGAGAGAAAAGACAAAGCTCAAAAAAAATTTCGGAGCCGCTGACTCGGATCCAAATGTCCAACTTCAAACTTCGGATCGAGGACCTCCAAGCCCATTTAGCCTCTGTTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

163

Amino Acids

17.62

Weight (kDa)

4.89

Isoelectric Point (pI)

44.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 366
AciI CCGC 3 cut(s) 294, 364, 420
AclWI GGATC 4 cut(s) 63, 425, 438, 465
AcsI RAATTY 1 cut(s) 409
AfaI GTAC 2 cut(s) 145, 151
AflII CTTAAG 1 cut(s) 323
AgsI TTSAA 3 cut(s) 27, 221, 449
AhlI ACTAGT 3 cut(s) 47, 140, 146
AjnI CCWGG 1 cut(s) 210
AluBI AGCT 3 cut(s) 35, 328, 400
AluI AGCT 3 cut(s) 35, 328, 400
AlwI GGATC 4 cut(s) 63, 425, 438, 465
ApeKI GCWGC 1 cut(s) 102
ApoI RAATTY 1 cut(s) 409
Asp700I GAANNNNTTC 2 cut(s) 49, 225
AspS9I GGNCC 1 cut(s) 464
AsuHPI GGTGA 2 cut(s) 200, 260
AvaII GGWCC 1 cut(s) 464
BamHI GGATCC 1 cut(s) 430
BbsI GAAGAC 1 cut(s) 278
BbvI GCAGC 1 cut(s) 89
BceAI ACGGC 1 cut(s) 361
BciT130I CCWGG 1 cut(s) 212
BcuI ACTAGT 3 cut(s) 47, 140, 146
BfaI CTAG 3 cut(s) 48, 141, 147
BfmI CTRYAG 1 cut(s) 103
BfrI CTTAAG 1 cut(s) 323
BisI GCNGC 3 cut(s) 103, 295, 420
BlpI GCTNAGC 1 cut(s) 329
BlsI GCNGC 3 cut(s) 104, 296, 421
BmcAI AGTACT 2 cut(s) 145, 151
Bme1390I CCNGG 1 cut(s) 212
Bme18I GGWCC 1 cut(s) 464
BmgT120I GGNCC 1 cut(s) 464
BmiI GGNNCC 2 cut(s) 418, 432
BmrFI CCNGG 1 cut(s) 212
BpiI GAAGAC 1 cut(s) 278
BpmI CTGGAG 1 cut(s) 57
Bpu1102I GCTNAGC 1 cut(s) 329
Bse1I ACTGG 1 cut(s) 61
BseBI CCWGG 1 cut(s) 212
BseGI GGATG 1 cut(s) 128
BseMII CTCAG 3 cut(s) 45, 343, 372
BseNI ACTGG 1 cut(s) 61
BseRI GAGGAG 2 cut(s) 115, 213
BseXI GCAGC 1 cut(s) 89
Bsh1236I CGCG 1 cut(s) 366
Bsp143I GATC 4 cut(s) 68, 205, 430, 457
Bsp1720I GCTNAGC 1 cut(s) 329
BspACI CCGC 3 cut(s) 294, 364, 420
BspCNI CTCAG 3 cut(s) 44, 342, 373
BspFNI CGCG 1 cut(s) 366
BspLI GGNNCC 2 cut(s) 418, 432
BspMAI CTGCAG 1 cut(s) 107
BspPI GGATC 4 cut(s) 63, 425, 438, 465
BspTI CTTAAG 1 cut(s) 323
BsrI ACTGG 1 cut(s) 61
BssMI GATC 4 cut(s) 68, 205, 430, 457
Bst2UI CCWGG 1 cut(s) 212
Bst4CI ACNGT 3 cut(s) 234, 248, 305
Bst6I CTCTTC 1 cut(s) 2
BstAFI CTTAAG 1 cut(s) 323
BstDEI CTNAG 3 cut(s) 31, 329, 381
BstF5I GGATG 1 cut(s) 128
BstFNI CGCG 1 cut(s) 366
BstKTI GATC 4 cut(s) 71, 208, 433, 460
BstMBI GATC 4 cut(s) 68, 205, 430, 457
BstMWI GCNNNNNNNGC 1 cut(s) 480
BstNI CCWGG 1 cut(s) 212
BstSCI CCNGG 1 cut(s) 210
BstSFI CTRYAG 1 cut(s) 103
BstUI CGCG 1 cut(s) 366
BstV1I GCAGC 1 cut(s) 89
BstV2I GAAGAC 1 cut(s) 278
BstX2I RGATCY 2 cut(s) 68, 430
BstYI RGATCY 2 cut(s) 68, 430
BtsCI GGATG 1 cut(s) 128
BtsI GCAGTG 1 cut(s) 112
BtsIMutI CAGTG 2 cut(s) 112, 230
Cfr13I GGNCC 1 cut(s) 464
Csp6I GTAC 2 cut(s) 144, 150
CviAII CATG 5 cut(s) 93, 166, 187, 241, 268
CviQI GTAC 2 cut(s) 144, 150
DdeI CTNAG 3 cut(s) 31, 329, 381
DpnI GATC 4 cut(s) 70, 207, 432, 459
DpnII GATC 4 cut(s) 68, 205, 430, 457
Eam1104I CTCTTC 1 cut(s) 2
EarI CTCTTC 1 cut(s) 2
Eco47I GGWCC 1 cut(s) 464
EcoO109I RGGNCCY 1 cut(s) 464
EcoRII CCWGG 1 cut(s) 210
FaeI CATG 5 cut(s) 96, 169, 190, 244, 271
FaiI YATR 6 cut(s) 94, 118, 167, 188, 242, 269
FatI CATG 5 cut(s) 92, 165, 186, 240, 267
FauI CCCGC 1 cut(s) 371
Fnu4HI GCNGC 3 cut(s) 103, 295, 420
FokI GGATG 1 cut(s) 115
Fsp4HI GCNGC 3 cut(s) 103, 295, 420
FspBI CTAG 3 cut(s) 48, 141, 147
GluI GCNGC 3 cut(s) 103, 295, 420
GsuI CTGGAG 1 cut(s) 57
Hin1II CATG 5 cut(s) 96, 169, 190, 244, 271
HincII GTYRAC 1 cut(s) 112
HindII GTYRAC 1 cut(s) 112
HinfI GANTC 1 cut(s) 425
HphI GGTGA 2 cut(s) 200, 260
Hpy166II GTNNAC 1 cut(s) 112
Hpy188I TCNGA 4 cut(s) 382, 416, 430, 457
Hpy8I GTNNAC 1 cut(s) 112
HpyAV CCTTC 2 cut(s) 236, 362
HpyCH4III ACNGT 3 cut(s) 234, 248, 305
HpyCH4V TGCA 3 cut(s) 105, 244, 315
HpyF10VI GCNNNNNNNGC 1 cut(s) 480
HpyF3I CTNAG 3 cut(s) 31, 329, 381
Hsp92II CATG 5 cut(s) 96, 169, 190, 244, 271
Kzo9I GATC 4 cut(s) 68, 205, 430, 457
LmnI GCTCC 1 cut(s) 416
LpnPI CCDG 4 cut(s) 21, 42, 197, 224
Lsp1109I GCAGC 1 cut(s) 89
MaeI CTAG 3 cut(s) 48, 141, 147
MaeIII GTNAC 1 cut(s) 77
MalI GATC 4 cut(s) 70, 207, 432, 459
MboI GATC 4 cut(s) 68, 205, 430, 457
MboII GAAGA 4 cut(s) 19, 185, 215, 283
MflI RGATCY 2 cut(s) 68, 430
MluCI AATT 2 cut(s) 82, 409
MlyI GAGTC 1 cut(s) 419
MmeI TCCRAC 1 cut(s) 466
MroXI GAANNNNTTC 2 cut(s) 49, 225
MseI TTAA 2 cut(s) 324, 490
MspA1I CMGCKG 2 cut(s) 35, 422
MspCI CTTAAG 1 cut(s) 323
MspR9I CCNGG 1 cut(s) 212
MvaI CCWGG 1 cut(s) 212
MvnI CGCG 1 cut(s) 366
MwoI GCNNNNNNNGC 1 cut(s) 480
NdeII GATC 4 cut(s) 68, 205, 430, 457
NlaIII CATG 5 cut(s) 96, 169, 190, 244, 271
NlaIV GGNNCC 2 cut(s) 418, 432
NmuCI GTSAC 1 cut(s) 77
PdmI GAANNNNTTC 2 cut(s) 49, 225
PkrI GCNGC 3 cut(s) 104, 296, 421
PleI GAGTC 1 cut(s) 419
PpsI GAGTC 1 cut(s) 419
PpuMI RGGWCCY 1 cut(s) 464
Psp5II RGGWCCY 1 cut(s) 464
Psp6I CCWGG 1 cut(s) 210
PspGI CCWGG 1 cut(s) 210
PspN4I GGNNCC 2 cut(s) 418, 432
PspPI GGNCC 1 cut(s) 464
PspPPI RGGWCCY 1 cut(s) 464
PsrI GAACNNNNNNTAC 2 cut(s) 37, 69
PstI CTGCAG 1 cut(s) 107
PsuI RGATCY 2 cut(s) 68, 430
PvuII CAGCTG 1 cut(s) 35
RsaI GTAC 2 cut(s) 145, 151
RsaNI GTAC 2 cut(s) 144, 150
SaqAI TTAA 2 cut(s) 324, 490
SatI GCNGC 3 cut(s) 103, 295, 420
Sau3AI GATC 4 cut(s) 68, 205, 430, 457
Sau96I GGNCC 1 cut(s) 464
ScaI AGTACT 2 cut(s) 145, 151
SchI GAGTC 1 cut(s) 419
ScrFI CCNGG 1 cut(s) 212
SetI ASST 6 cut(s) 37, 292, 330, 373, 402, 469
SfcI CTRYAG 1 cut(s) 103
SinI GGWCC 1 cut(s) 464
SmlI CTYRAG 1 cut(s) 323
SmoI CTYRAG 1 cut(s) 323
SpeI ACTAGT 3 cut(s) 47, 140, 146
Sse9I AATT 2 cut(s) 82, 409
SsiI CCGC 3 cut(s) 294, 364, 420
SspMI CTAG 3 cut(s) 48, 141, 147
StyD4I CCNGG 1 cut(s) 210
TaaI ACNGT 3 cut(s) 234, 248, 305
TaqI TCGA 2 cut(s) 350, 460
TasI AATT 2 cut(s) 82, 409
TatI WGTACW 2 cut(s) 143, 149
TauI GCSGC 2 cut(s) 297, 422
Tru1I TTAA 2 cut(s) 324, 490
Tru9I TTAA 2 cut(s) 324, 490
TscAI CASTG 2 cut(s) 112, 237
TseFI GTSAC 1 cut(s) 77
TseI GCWGC 1 cut(s) 102
Tsp45I GTSAC 1 cut(s) 77
TspDTI ATGAA 4 cut(s) 175, 182, 186, 284
TspRI CASTG 2 cut(s) 112, 237
Vha464I CTTAAG 1 cut(s) 323
VpaK11BI GGWCC 1 cut(s) 464
XapI RAATTY 1 cut(s) 409
XmnI GAANNNNTTC 2 cut(s) 49, 225
XspI CTAG 3 cut(s) 48, 141, 147
ZrmI AGTACT 2 cut(s) 145, 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.