Rorug06G0219700

DUF21 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0002295
Physical Location & Seq
Reverse (-)
35098881 .. 35100648
1768 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0219700.1

Sequence Viewer

Length: 339 bp
ATGAAGGAAATTGTGATAAAAGTCAATATTAATTGCCAGATTTGCAAGACAGATGTACTAAAAGCCGTTGCCAAGCTTACAGGAATAACTATGGTGGTAGTAGATGGTGAGAAGGGATTACTGAGAGTTGTGGGAGATGTTGATCCAGTGTTGGTGGTGAAACGACTAAGGAAGGCCAGAAAAGTAGCAGAAATTGTAAGTGTTGGACCGCCGAAGCCTTCGGAACCTAAGCAAATTCCTCCTGTATTCCTTCTTCCTCCATGTTGTAATCAGTGTGAGCTTGTTGGGGTCATCAGCTATGCTCCTCATTTTGATGGTGGAGTGTGCAACATCCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03022 ko05169 ko05203 map03022 map05169 map05203
Pfam Domains
Protein Families
DUF21

Protein Analysis

112

Amino Acids

12.07

Weight (kDa)

8.99

Isoelectric Point (pI)

34.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMA PF00403 6 - 58 3.9e-09 Heavy-metal-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 209
AclWI GGATC 1 cut(s) 137
AcsI RAATTY 1 cut(s) 234
AfaI GTAC 1 cut(s) 57
AluBI AGCT 3 cut(s) 76, 280, 297
AluI AGCT 3 cut(s) 76, 280, 297
AlwI GGATC 1 cut(s) 137
AoxI GGCC 1 cut(s) 174
ApoI RAATTY 1 cut(s) 234
AseI ATTAAT 1 cut(s) 30
AspS9I GGNCC 1 cut(s) 206
AsuHPI GGTGA 2 cut(s) 119, 169
AvaII GGWCC 1 cut(s) 206
BarI GAAGNNNNNNTAC 2 cut(s) 237, 269
BccI CCATC 2 cut(s) 98, 308
BceAI ACGGC 1 cut(s) 50
Bme18I GGWCC 1 cut(s) 206
BmgT120I GGNCC 1 cut(s) 206
BmiI GGNNCC 1 cut(s) 225
Bpu10I CCTNAGC 1 cut(s) 228
BsaBI GATNNNNATC 1 cut(s) 141
Bse1I ACTGG 1 cut(s) 146
Bse8I GATNNNNATC 1 cut(s) 141
BseGI GGATG 1 cut(s) 330
BseJI GATNNNNATC 1 cut(s) 141
BseMII CTCAG 1 cut(s) 113
BseNI ACTGG 1 cut(s) 146
BseRI GAGGAG 1 cut(s) 294
BshFI GGCC 1 cut(s) 176
BsnI GGCC 1 cut(s) 176
Bsp143I GATC 1 cut(s) 142
BspACI CCGC 1 cut(s) 209
BspANI GGCC 1 cut(s) 176
BspCNI CTCAG 1 cut(s) 114
BspLI GGNNCC 1 cut(s) 225
BspPI GGATC 1 cut(s) 137
BsrI ACTGG 1 cut(s) 146
BssMI GATC 1 cut(s) 142
BstDEI CTNAG 3 cut(s) 122, 167, 228
BstF5I GGATG 1 cut(s) 330
BstKTI GATC 1 cut(s) 145
BstMBI GATC 1 cut(s) 142
BstMWI GCNNNNNNNGC 1 cut(s) 42
BsuRI GGCC 1 cut(s) 176
BtsCI GGATG 1 cut(s) 330
BtsIMutI CAGTG 2 cut(s) 153, 278
Cfr13I GGNCC 1 cut(s) 206
Csp6I GTAC 1 cut(s) 56
CviAII CATG 1 cut(s) 261
CviJI RGCY 6 cut(s) 65, 76, 176, 217, 280, 297
CviKI_1 RGCY 6 cut(s) 65, 76, 176, 217, 280, 297
CviQI GTAC 1 cut(s) 56
DdeI CTNAG 3 cut(s) 122, 167, 228
DpnI GATC 1 cut(s) 144
DpnII GATC 1 cut(s) 142
Eco47I GGWCC 1 cut(s) 206
FaeI CATG 1 cut(s) 264
FaiI YATR 3 cut(s) 92, 262, 300
FatI CATG 1 cut(s) 260
FokI GGATG 1 cut(s) 317
HaeIII GGCC 1 cut(s) 176
Hin1II CATG 1 cut(s) 264
HindIII AAGCTT 1 cut(s) 74
HphI GGTGA 2 cut(s) 119, 169
Hpy188I TCNGA 1 cut(s) 223
HpyAV CCTTC 4 cut(s) 106, 166, 228, 260
HpyCH4V TGCA 2 cut(s) 45, 327
HpyF10VI GCNNNNNNNGC 1 cut(s) 42
HpyF3I CTNAG 3 cut(s) 122, 167, 228
Hsp92II CATG 1 cut(s) 264
Kzo9I GATC 1 cut(s) 142
LmnI GCTCC 1 cut(s) 307
LpnPI CCDG 5 cut(s) 50, 66, 159, 190, 255
MalI GATC 1 cut(s) 144
MboI GATC 1 cut(s) 142
MboII GAAGA 1 cut(s) 245
MluCI AATT 4 cut(s) 9, 31, 192, 234
MmeI TCCRAC 1 cut(s) 184
MnlI CCTC 3 cut(s) 249, 267, 315
MseI TTAA 1 cut(s) 30
MslI CAYNNNNRTG 1 cut(s) 312
MwoI GCNNNNNNNGC 1 cut(s) 42
NdeII GATC 1 cut(s) 142
NlaIII CATG 1 cut(s) 264
NlaIV GGNNCC 1 cut(s) 225
PshBI ATTAAT 1 cut(s) 30
PspN4I GGNNCC 1 cut(s) 225
PspPI GGNCC 1 cut(s) 206
RsaI GTAC 1 cut(s) 57
RsaNI GTAC 1 cut(s) 56
RseI CAYNNNNRTG 1 cut(s) 312
SaqAI TTAA 1 cut(s) 30
Sau3AI GATC 1 cut(s) 142
Sau96I GGNCC 1 cut(s) 206
SetI ASST 4 cut(s) 78, 229, 282, 299
SgeI CNNG 9 cut(s) 49, 58, 85, 93, 158, 189, 254, 273, 293
SinI GGWCC 1 cut(s) 206
SmiMI CAYNNNNRTG 1 cut(s) 312
Sse9I AATT 4 cut(s) 9, 31, 192, 234
SsiI CCGC 1 cut(s) 209
SspI AATATT 1 cut(s) 28
TasI AATT 4 cut(s) 9, 31, 192, 234
TatI WGTACW 1 cut(s) 55
Tru1I TTAA 1 cut(s) 30
Tru9I TTAA 1 cut(s) 30
TscAI CASTG 2 cut(s) 153, 278
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 153, 278
VpaK11BI GGWCC 1 cut(s) 206
VspI ATTAAT 1 cut(s) 30
XapI RAATTY 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.