RchiOBHm_Chr4g0418451

DUF21 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0002295
Physical Location & Seq
Forward (+)
43888695 .. 43893210
4516 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38844

Sequence Viewer

Length: 1512 bp
ATGCATCCCCTCAATGCAGTCATGATGACCCGGATGCTGGTTCGGAACAGCAACAACAACAACTCCGGTCTGGAATCCGGGGGCATAGCCTTCGCATCGATTTGGTGGTTTGTCTACATCGGCTTGTCGTGTTTCTTGGTCCTCTTCGCTGGAATAATGTCAGGCTTAACTTTAGGACTCATGTCCCTCGGCCTCGTCGACCTCGAGATTCTACAGCGAAGTGGTACTCCCACCGAGAAGAAGCAAGCAGCGACTATACTTCCGGTGGTTCAGAAGCAGCATCAGCTGCTTGTCACTTTGCTTCTGTGTAATGCTGGAGCTATGGAAGCGCTTCCTATATATTTGGACAAGCTTTTCAATCAGTATGTTGCTATAATTCTGTCTGTGACATTTGTGCTGTTTTTCGGAGAGGTTATTCCACAAGCGATATGCACTAGATATGGACTGGCTGTGGGTTCCAACTTTGTATGGCTTGTCCGAATTTTGATGATTATTTGCTACCCAATTGCTTATCCAATTGGAAAGATCTTGGATTGTGTTCTGGGACATAATGAGGCATTATTTAGGCGAGCTCAGTTAAAAGCCCTTGTCTCCATCCACAGCAAGGAGGAGGGCAAAGGCGGTGAACTTACACATGATGAGACAACAATAATTAGTGGAGCACTGGACTTAACTGAAAAGACTGCTGAGGAGGCTATGACACCTATTGAATCAACCTTCTCCTTAGATGTCAATTCAAAGTTGGACTGGGAAGCAATGGGGAAAGTTCTTGCTCGGGGACATAGTCGAGTTCCTGTCTATTCTGGGAATTCAAGGAATATTATTGGACTTCTCCTGGTGAAAAGTCTTCTCACTGTACGACCCGAAACAGAGACCCCTGTTAGTGCTGTTTCCATCCGTAGAATCCCAAGAGTTCCCGCAGATATGCCACTGTATGATATATTGAATGAGTTTCAAAAGGGCAGCAGTCATATGGCTGCTGTGGTAAAGGCCAGAGGGAAAAGTAAGACTCATCCACCCACGATTGACGGAGAAAATAATGAAGGAAACAAAATTGCTGGCATGGACTCCCAACTGACTACTCCATTGCTATCCAAGCAGGAGGATGGAAAGCCAGATCATGTTGTTGTTGACGTGCCCAAGATACCAAAGCCCACTAGTATGAAAAAGGAAGCACTCTCACACTACAATGTTGGAGAAACAATTGGCCCCCCTTCGTCAGAGGATATTGAGGATGGTGAAGTCATTGGTATCATCACCCTGGAAGATGTATTTGAAGAACTCCTGCAGGAGGAGATTGTCGATGAAACGGATGAATATGTTGATGTACATAAAAGAATACGCGTTGCTGCAGCTGCAGCTGCTTCATCAGTGGCGCGAGCTCCATCACTGCGGAGGTTAAATGTCAACAAGGGACCAGGAGCCCAAACTAAGCAAGTAACCCCGAAGAAATCTACTGATGAATTGGCTGCAAGGCCACACGGGACTTTTGCTGATGGAAACAAGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF21

Protein Analysis

503

Amino Acids

54.84

Weight (kDa)

6.21

Isoelectric Point (pI)

42.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CNNM PF01595 42 - 211 7.1e-35 Cyclin M transmembrane N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 114, 198
AccII CGCG 2 cut(s) 1344, 1378
AciI CCGC 3 cut(s) 621, 918, 1393
AcsI RAATTY 2 cut(s) 480, 808
AfaI GTAC 3 cut(s) 226, 858, 1329
AfeI AGCGCT 1 cut(s) 330
AfiI CCNNNNNNNGG 3 cut(s) 37, 604, 1291
AflIII ACRYGT 1 cut(s) 1342
AgsI TTSAA 7 cut(s) 358, 710, 738, 813, 946, 956, 1277
AhlI ACTAGT 1 cut(s) 1157
AjiI CACGTC 1 cut(s) 1135
AjnI CCWGG 3 cut(s) 834, 1260, 1417
AluBI AGCT 7 cut(s) 286, 320, 352, 572, 1355, 1361, 1382
AluI AGCT 7 cut(s) 286, 320, 352, 572, 1355, 1361, 1382
Alw21I GWGCWC 3 cut(s) 574, 664, 1384
Alw26I GTCTC 3 cut(s) 595, 635, 866
Ama87I CYCGRG 2 cut(s) 203, 774
Aor51HI AGCGCT 1 cut(s) 330
AoxI GGCC 4 cut(s) 190, 990, 1207, 1475
ApoI RAATTY 2 cut(s) 480, 808
Asp700I GAANNNNTTC 1 cut(s) 330
AspLEI GCGC 2 cut(s) 331, 1378
AspS9I GGNCC 3 cut(s) 139, 1208, 1415
AsuC2I CCSGG 2 cut(s) 31, 79
AsuHPI GGTGA 4 cut(s) 635, 850, 1249, 1250
AvaI CYCGRG 2 cut(s) 203, 774
AvaII GGWCC 2 cut(s) 139, 1415
BaeGI GKGCMC 1 cut(s) 1140
BanII GRGCYC 3 cut(s) 574, 1384, 1426
BbsI GAAGAC 1 cut(s) 839
Bbv12I GWGCWC 3 cut(s) 574, 664, 1384
BbvCI CCTCAGC 1 cut(s) 687
BccI CCATC 6 cut(s) 602, 902, 1100, 1229, 1393, 1490
BcgI CGANNNNNNTGC 2 cut(s) 73, 107
BciT130I CCWGG 3 cut(s) 836, 1262, 1419
BcnI CCSGG 2 cut(s) 31, 79
BcoDI GTCTC 3 cut(s) 595, 635, 866
BcuI ACTAGT 1 cut(s) 1157
BfaI CTAG 2 cut(s) 435, 1158
BfmI CTRYAG 4 cut(s) 212, 1286, 1350, 1356
BfoI RGCGCY 1 cut(s) 332
BglII AGATCT 1 cut(s) 525
Bme1390I CCNGG 5 cut(s) 31, 79, 836, 1262, 1419
Bme18I GGWCC 2 cut(s) 139, 1415
BmeT110I CYCGRG 2 cut(s) 203, 774
BmgBI CACGTC 1 cut(s) 1135
BmgT120I GGNCC 3 cut(s) 139, 1208, 1415
BmiI GGNNCC 4 cut(s) 457, 1210, 1416, 1423
BmrFI CCNGG 5 cut(s) 31, 79, 836, 1262, 1419
BmrI ACTGGG 1 cut(s) 757
BmsI GCATC 4 cut(s) 13, 24, 104, 289
BmuI ACTGGG 1 cut(s) 757
BoxI GACNNNNGTC 1 cut(s) 181
BpiI GAAGAC 1 cut(s) 839
BpmI CTGGAG 1 cut(s) 336
Bpu10I CCTNAGC 1 cut(s) 687
BpuMI CCSGG 2 cut(s) 31, 79
Bsa29I ATCGAT 1 cut(s) 98
BsaI GGTCTC 1 cut(s) 866
BsaJI CCNNGG 3 cut(s) 78, 187, 1260
BsaWI WCCGGW 2 cut(s) 65, 262
BsaXI ACNNNNNCTCC 2 cut(s) 47, 77
Bsc4I CCNNNNNNNGG 3 cut(s) 37, 604, 1291
Bse1I ACTGG 3 cut(s) 450, 669, 752
Bse3DI GCAATG 2 cut(s) 762, 1085
BseBI CCWGG 3 cut(s) 836, 1262, 1419
BseCI ATCGAT 1 cut(s) 98
BseDI CCNNGG 3 cut(s) 78, 187, 1260
BseGI GGATG 8 cut(s) 4, 39, 594, 894, 1012, 1111, 1240, 1318
BseLI CCNNNNNNNGG 3 cut(s) 37, 604, 1291
BseMI GCAATG 2 cut(s) 762, 1085
BseMII CTCAG 2 cut(s) 587, 678
BseNI ACTGG 3 cut(s) 450, 669, 752
BseRI GAGGAG 3 cut(s) 623, 704, 1307
BseSI GKGCMC 1 cut(s) 1140
Bsh1236I CGCG 2 cut(s) 1344, 1378
BshFI GGCC 4 cut(s) 192, 992, 1209, 1477
BshVI ATCGAT 1 cut(s) 98
BsiHKAI GWGCWC 3 cut(s) 574, 664, 1384
BsiHKCI CYCGRG 2 cut(s) 203, 774
BsiSI CCGG 4 cut(s) 31, 66, 78, 263
BslFI GGGAC 5 cut(s) 169, 558, 792, 1428, 1498
BslI CCNNNNNNNGG 3 cut(s) 37, 604, 1291
BsmAI GTCTC 3 cut(s) 595, 635, 866
BsmFI GGGAC 5 cut(s) 169, 558, 792, 1428, 1498
BsnI GGCC 4 cut(s) 192, 992, 1209, 1477
Bso31I GGTCTC 1 cut(s) 866
BsoBI CYCGRG 2 cut(s) 203, 774
Bsp1286I GDGCHC 5 cut(s) 574, 664, 1140, 1384, 1426
Bsp1407I TGTACA 1 cut(s) 1327
Bsp143I GATC 2 cut(s) 525, 1117
BspACI CCGC 3 cut(s) 621, 918, 1393
BspANI GGCC 4 cut(s) 192, 992, 1209, 1477
BspCNI CTCAG 2 cut(s) 586, 679
BspDI ATCGAT 1 cut(s) 98
BspFNI CGCG 2 cut(s) 1344, 1378
BspHI TCATGA 1 cut(s) 21
BspLI GGNNCC 4 cut(s) 457, 1210, 1416, 1423
BspMAI CTGCAG 3 cut(s) 1290, 1354, 1360
BspTNI GGTCTC 1 cut(s) 866
BsrDI GCAATG 2 cut(s) 762, 1085
BsrGI TGTACA 1 cut(s) 1327
BsrI ACTGG 3 cut(s) 450, 669, 752
BssECI CCNNGG 3 cut(s) 78, 187, 1260
BssMI GATC 2 cut(s) 525, 1117
Bst2UI CCWGG 3 cut(s) 836, 1262, 1419
Bst4CI ACNGT 2 cut(s) 856, 933
Bst6I CTCTTC 1 cut(s) 149
BstAPI GCANNNNNTGC 1 cut(s) 286
BstAUI TGTACA 1 cut(s) 1327
BstC8I GCNNGC 4 cut(s) 246, 570, 1060, 1380
BstDEI CTNAG 4 cut(s) 573, 687, 724, 1431
BstENI CCTNNNNNAGG 1 cut(s) 1289
BstF5I GGATG 8 cut(s) 4, 39, 594, 894, 1012, 1111, 1240, 1318
BstFNI CGCG 2 cut(s) 1344, 1378
BstH2I RGCGCY 1 cut(s) 332
BstHHI GCGC 2 cut(s) 331, 1378
BstKTI GATC 2 cut(s) 528, 1120
BstMAI GTCTC 3 cut(s) 595, 635, 866
BstMBI GATC 2 cut(s) 525, 1117
BstMWI GCNNNNNNNGC 8 cut(s) 283, 286, 326, 692, 1096, 1355, 1358, 1361
BstNI CCWGG 3 cut(s) 836, 1262, 1419
BstPAI GACNNNNGTC 1 cut(s) 181
BstSCI CCNGG 5 cut(s) 29, 77, 834, 1260, 1417
BstSFI CTRYAG 4 cut(s) 212, 1286, 1350, 1356
BstSLI GKGCMC 1 cut(s) 1140
BstUI CGCG 2 cut(s) 1344, 1378
BstV2I GAAGAC 1 cut(s) 839
BstX2I RGATCY 1 cut(s) 525
BstYI RGATCY 1 cut(s) 525
Bsu15I ATCGAT 1 cut(s) 98
BsuRI GGCC 4 cut(s) 192, 992, 1209, 1477
BsuTUI ATCGAT 1 cut(s) 98
BtrI CACGTC 1 cut(s) 1135
BtsCI GGATG 8 cut(s) 4, 39, 594, 894, 1012, 1111, 1240, 1318
BtsI GCAGTG 1 cut(s) 1388
BtsIMutI CAGTG 5 cut(s) 662, 852, 929, 1377, 1388
Cac8I GCNNGC 4 cut(s) 246, 570, 1060, 1380
CciI TCATGA 1 cut(s) 21
CfoI GCGC 2 cut(s) 331, 1378
Cfr13I GGNCC 3 cut(s) 139, 1208, 1415
ClaI ATCGAT 1 cut(s) 98
Csp6I GTAC 3 cut(s) 225, 857, 1328
CviAII CATG 5 cut(s) 22, 181, 635, 1063, 1121
CviQI GTAC 3 cut(s) 225, 857, 1328
DdeI CTNAG 4 cut(s) 573, 687, 724, 1431
DpnI GATC 2 cut(s) 527, 1119
DpnII GATC 2 cut(s) 525, 1117
Eam1104I CTCTTC 1 cut(s) 149
EarI CTCTTC 1 cut(s) 149
Ecl136II GAGCTC 2 cut(s) 572, 1382
Eco24I GRGCYC 3 cut(s) 574, 1384, 1426
Eco31I GGTCTC 1 cut(s) 866
Eco47I GGWCC 2 cut(s) 139, 1415
Eco47III AGCGCT 1 cut(s) 330
Eco53kI GAGCTC 2 cut(s) 572, 1382
Eco88I CYCGRG 2 cut(s) 203, 774
EcoICRI GAGCTC 2 cut(s) 572, 1382
EcoNI CCTNNNNNAGG 1 cut(s) 1289
EcoRI GAATTC 1 cut(s) 808
EcoRII CCWGG 3 cut(s) 834, 1260, 1417
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 3 cut(s) 574, 1384, 1426
FaeI CATG 5 cut(s) 25, 184, 638, 1066, 1124
FaqI GGGAC 5 cut(s) 169, 558, 792, 1428, 1498
FatI CATG 5 cut(s) 21, 180, 634, 1062, 1120
FauI CCCGC 1 cut(s) 925
FauNDI CATATG 1 cut(s) 972
FblI GTMKAC 2 cut(s) 114, 198
FokI GGATG 7 cut(s) 46, 581, 881, 999, 1118, 1247, 1325
FriOI GRGCYC 3 cut(s) 574, 1384, 1426
FspBI CTAG 2 cut(s) 435, 1158
GlaI GCGC 2 cut(s) 330, 1377
GsuI CTGGAG 1 cut(s) 336
HaeII RGCGCY 1 cut(s) 332
HaeIII GGCC 4 cut(s) 192, 992, 1209, 1477
HapII CCGG 4 cut(s) 31, 66, 78, 263
HhaI GCGC 2 cut(s) 331, 1378
Hin1II CATG 5 cut(s) 25, 184, 638, 1066, 1124
Hin6I GCGC 2 cut(s) 329, 1376
HinP1I GCGC 2 cut(s) 329, 1376
HincII GTYRAC 3 cut(s) 199, 1132, 1408
HindII GTYRAC 3 cut(s) 199, 1132, 1408
HindIII AAGCTT 1 cut(s) 350
HinfI GANTC 7 cut(s) 74, 177, 208, 710, 903, 1009, 1067
HpaII CCGG 4 cut(s) 31, 66, 78, 263
HphI GGTGA 4 cut(s) 635, 850, 1249, 1250
Hpy166II GTNNAC 5 cut(s) 115, 199, 626, 1132, 1408
Hpy188I TCNGA 5 cut(s) 45, 273, 407, 479, 1222
Hpy188III TCNNGA 3 cut(s) 22, 71, 205
Hpy8I GTNNAC 5 cut(s) 115, 199, 626, 1132, 1408
Hpy99I CGWCG 1 cut(s) 200
HpyAV CCTTC 4 cut(s) 100, 727, 1037, 1224
HpyCH4III ACNGT 2 cut(s) 856, 933
HpyCH4IV ACGT 1 cut(s) 1134
HpyCH4V TGCA 7 cut(s) 4, 17, 432, 1288, 1352, 1358, 1472
HpyF10VI GCNNNNNNNGC 8 cut(s) 283, 286, 326, 692, 1096, 1355, 1358, 1361
HpyF3I CTNAG 4 cut(s) 573, 687, 724, 1431
HpySE526I ACGT 1 cut(s) 1134
Hsp92II CATG 5 cut(s) 25, 184, 638, 1066, 1124
HspAI GCGC 2 cut(s) 329, 1376
Kzo9I GATC 2 cut(s) 525, 1117
LmnI GCTCC 4 cut(s) 317, 659, 1387, 1421
LweI GCATC 4 cut(s) 13, 24, 104, 289
MaeI CTAG 2 cut(s) 435, 1158
MaeII ACGT 1 cut(s) 1134
MaeIII GTNAC 3 cut(s) 292, 385, 1438
MalI GATC 2 cut(s) 527, 1119
MboI GATC 2 cut(s) 525, 1117
MboII GAAGA 6 cut(s) 136, 250, 839, 1277, 1289, 1459
MfeI CAATTG 3 cut(s) 504, 516, 1203
MflI RGATCY 1 cut(s) 525
MhlI GDGCHC 5 cut(s) 574, 664, 1140, 1384, 1426
MluI ACGCGT 1 cut(s) 1342
MlyI GAGTC 3 cut(s) 171, 1003, 1061
MmeI TCCRAC 3 cut(s) 483, 723, 1174
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 330
MseI TTAA 4 cut(s) 167, 578, 671, 1400
MslI CAYNNNNRTG 2 cut(s) 1160, 1188
MspA1I CMGCKG 3 cut(s) 286, 1355, 1361
MspI CCGG 4 cut(s) 31, 66, 78, 263
MspR9I CCNGG 5 cut(s) 31, 79, 836, 1262, 1419
MunI CAATTG 3 cut(s) 504, 516, 1203
MvaI CCWGG 3 cut(s) 836, 1262, 1419
MvnI CGCG 2 cut(s) 1344, 1378
MwoI GCNNNNNNNGC 8 cut(s) 283, 286, 326, 692, 1096, 1355, 1358, 1361
NciI CCSGG 2 cut(s) 31, 79
NdeI CATATG 1 cut(s) 972
NdeII GATC 2 cut(s) 525, 1117
NlaIII CATG 5 cut(s) 25, 184, 638, 1066, 1124
NlaIV GGNNCC 4 cut(s) 457, 1210, 1416, 1423
NmeAIII GCCGAG 1 cut(s) 168
NmuCI GTSAC 2 cut(s) 292, 385
NsiI ATGCAT 1 cut(s) 6
PaeR7I CTCGAG 1 cut(s) 203
PagI TCATGA 1 cut(s) 21
PcsI WCGNNNNNNNCGW 2 cut(s) 195, 201
PdmI GAANNNNTTC 1 cut(s) 330
PfeI GAWTC 4 cut(s) 74, 208, 710, 903
PflFI GACNNNGTC 1 cut(s) 783
PleI GAGTC 3 cut(s) 171, 1003, 1061
PpsI GAGTC 3 cut(s) 171, 1003, 1061
PshAI GACNNNNGTC 1 cut(s) 181
Psp124BI GAGCTC 2 cut(s) 574, 1384
Psp6I CCWGG 3 cut(s) 834, 1260, 1417
PspGI CCWGG 3 cut(s) 834, 1260, 1417
PspN4I GGNNCC 4 cut(s) 457, 1210, 1416, 1423
PspPI GGNCC 3 cut(s) 139, 1208, 1415
PstI CTGCAG 3 cut(s) 1290, 1354, 1360
PsuI RGATCY 1 cut(s) 525
PsyI GACNNNGTC 1 cut(s) 783
PvuII CAGCTG 3 cut(s) 286, 1355, 1361
RsaI GTAC 3 cut(s) 226, 858, 1329
RsaNI GTAC 3 cut(s) 225, 857, 1328
RseI CAYNNNNRTG 2 cut(s) 1160, 1188
SacI GAGCTC 2 cut(s) 574, 1384
SalI GTCGAC 1 cut(s) 197
SaqAI TTAA 4 cut(s) 167, 578, 671, 1400
Sau3AI GATC 2 cut(s) 525, 1117
Sau96I GGNCC 3 cut(s) 139, 1208, 1415
SbfI CCTGCAGG 1 cut(s) 1290
SchI GAGTC 3 cut(s) 171, 1003, 1061
ScrFI CCNGG 5 cut(s) 31, 79, 836, 1262, 1419
SdaI CCTGCAGG 1 cut(s) 1290
SduI GDGCHC 5 cut(s) 574, 664, 1140, 1384, 1426
SfaNI GCATC 4 cut(s) 13, 24, 104, 289
SfcI CTRYAG 4 cut(s) 212, 1286, 1350, 1356
Sfr274I CTCGAG 1 cut(s) 203
SinI GGWCC 2 cut(s) 139, 1415
SlaI CTCGAG 1 cut(s) 203
SmiMI CAYNNNNRTG 2 cut(s) 1160, 1188
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
SpeI ACTAGT 1 cut(s) 1157
Sse8387I CCTGCAGG 1 cut(s) 1290
SsiI CCGC 3 cut(s) 621, 918, 1393
SspI AATATT 1 cut(s) 820
SspMI CTAG 2 cut(s) 435, 1158
SstI GAGCTC 2 cut(s) 574, 1384
StyD4I CCNGG 5 cut(s) 29, 77, 834, 1260, 1417
TaaI ACNGT 2 cut(s) 856, 933
TaiI ACGT 1 cut(s) 1137
TaqI TCGA 5 cut(s) 98, 198, 204, 787, 1302
TatI WGTACW 1 cut(s) 1327
TfiI GAWTC 4 cut(s) 74, 208, 710, 903
Tru1I TTAA 4 cut(s) 167, 578, 671, 1400
Tru9I TTAA 4 cut(s) 167, 578, 671, 1400
TscAI CASTG 5 cut(s) 669, 859, 936, 1377, 1395
TseFI GTSAC 2 cut(s) 292, 385
Tsp45I GTSAC 2 cut(s) 292, 385
TspDTI ATGAA 6 cut(s) 1056, 1178, 1320, 1329, 1356, 1476
TspGWI ACGGA 3 cut(s) 887, 1044, 1325
TspRI CASTG 5 cut(s) 669, 859, 936, 1377, 1395
Tth111I GACNNNGTC 1 cut(s) 783
VpaK11BI GGWCC 2 cut(s) 139, 1415
XagI CCTNNNNNAGG 1 cut(s) 1289
XapI RAATTY 2 cut(s) 480, 808
XhoI CTCGAG 1 cut(s) 203
XmiI GTMKAC 2 cut(s) 114, 198
XmnI GAANNNNTTC 1 cut(s) 330
XspI CTAG 2 cut(s) 435, 1158
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.