AT4G15760

FAD binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0002765
Physical Location & Seq
Reverse (-)
8972649 .. 8974769
2121 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G15760.2

Sequence Viewer

Length: 1269 bp
ATGTTACCTATAGGACTACAGATATTAAAACAACTACCCAAACAAAACTTTAGATCTGAAAATCTCAGCTTTGAAATGGAGGAAATCGGAATAGTTATCGTCGGCGGCGGAATCGCTGGTCTCGCCACTTCCATTGCTCTTCATAGGAAAGGAATAAAGAGTGTGGTGTTGGAGAGAGCAGAGAAAGTGAGATCGGAAGGAGCTGGAATCGGAACTCTCTCCAATGGTTGGAGAGCCCTTGATCAGCTTGGCGTTGGTGATCGCCTTCGTCTCAATTCTTCTCTTATTCACAAGGCACGGACCATGTTGATTGAGAATGGAAAAAAACGAGAATTCGTTTCAAATATAGTAGACGAAGCTCGTTGTATTAAAAGGAACGATCTTGTTGAGGCCTTATCCGATGCCCTTCCGAAAGGAACCATCCGGTTCGGTTCTCATATTGTTTCTATTGAGCAGGACAAAACTACGTTGTTTCCGGTTGTTCACTTAGCCAATGGAAATAGCATCAAAGCCAAGGTCCTGATTGGATGCGATGGTGCCAATTCTATCGTCAGTGATTATTTGCAGTTAAACCCGAAAAAGGCGTTTGCTTGTCGTGCGGTGAGAGGGTTTACTAAGTACCCAAACGGCCATGGATTTCCACAAGAGGTTCTAAGGATAAAGCAAGGAAATGTCTTAATAGGAAGGCTTCCTTTGACGGATAATCAAGTCTTTTGGTTTCTAGTACATATGCAAGACAATAATCACAATGGTAAAGATCAAGAATCGATTGCGAATCTGTGTCGAAAATGGGCCGATGACTTGTCTGAAGATTGGAAAGAAATGGTAAAAATATGCAATGTGGAGTCATTAACACTCACACACTTAAGGTACCGAGCGCCATCGGAAATCATGTTAGGGAAATTTCGTCGTGGGACAGTGACTGTAGCCGGCGATGCGATGCACGTGATGGGTCCGTTCTTGGCACAGGGCGGCTCAGCGGCGCTAGAGGATGCGGTTGTTTTAGCTAGGTGTCTAGCTAGGAAAGTTGGTCCGGACCACGGAGACTTGTTAAAGGATTGTTCGATGAAAAACATTGAAGAAGCTATTGATGAGTATGTGGATGAACGTAGGATGAGATTACTCGGGCTTTCGGTGCAGACTTATTTGACCGGACGTTCGCTACAAACGTCATCAAAGGTTCTGAGGCTAATGTTTATAGCTTTGTTGTTACTTTTGTTTGGTCGTGATCAAATTCGTCATACTAGGTACGACTGTGGCCGTCTCTAG

Protein Analysis

422

Amino Acids

46.9

Weight (kDa)

9.32

Isoelectric Point (pI)

37.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 31 - 354 5.1e-27 FAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 870
AccB1I GGYRCC 2 cut(s) 536, 870
AccB7I CCANNNNNTGG 1 cut(s) 228
AccI GTMKAC 1 cut(s) 351
AccIII TCCGGA 1 cut(s) 1033
AciI CCGC 6 cut(s) 105, 108, 599, 972, 980, 995
AcoI YGGCCR 2 cut(s) 628, 1258
AcsI RAATTY 3 cut(s) 332, 902, 1233
AcuI CTGAAG 1 cut(s) 828
AcvI CACGTG 1 cut(s) 946
AfaI GTAC 4 cut(s) 620, 726, 872, 1250
AfiI CCNNNNNNNGG 3 cut(s) 228, 580, 1040
AflII CTTAAG 1 cut(s) 865
AgsI TTSAA 3 cut(s) 74, 342, 1079
AluBI AGCT 8 cut(s) 69, 203, 247, 359, 1007, 1019, 1085, 1202
AluI AGCT 8 cut(s) 69, 203, 247, 359, 1007, 1019, 1085, 1202
Alw26I GTCTC 3 cut(s) 125, 275, 1038
AlwNI CAGNNNCTG 1 cut(s) 923
Ama87I CYCGRG 1 cut(s) 1124
Aor13HI TCCGGA 1 cut(s) 1033
AoxI GGCC 4 cut(s) 390, 628, 792, 1258
ApoI RAATTY 3 cut(s) 332, 902, 1233
ArsI GACNNNNNNTTYG 4 cut(s) 501, 533, 1141, 1173
Asp718I GGTACC 1 cut(s) 870
AspLEI GCGC 2 cut(s) 880, 985
AspS9I GGNCC 6 cut(s) 300, 517, 792, 953, 1031, 1036
AsuHPI GGTGA 2 cut(s) 269, 613
AvaI CYCGRG 1 cut(s) 1124
AvaII GGWCC 5 cut(s) 300, 517, 953, 1031, 1036
BaeI ACNNNNGTAYC 1 cut(s) 1240
BanI GGYRCC 2 cut(s) 536, 870
BanII GRGCYC 1 cut(s) 238
BbrPI CACGTG 1 cut(s) 946
BccI CCATC 4 cut(s) 428, 527, 889, 943
BceAI ACGGC 2 cut(s) 643, 1245
BclI TGATCA 2 cut(s) 241, 1228
BcoDI GTCTC 3 cut(s) 125, 275, 1038
BfaI CTAG 7 cut(s) 722, 986, 1008, 1016, 1020, 1245, 1267
BfmI CTRYAG 3 cut(s) 9, 17, 924
BfoI RGCGCY 2 cut(s) 881, 986
BfrI CTTAAG 1 cut(s) 865
BglII AGATCT 1 cut(s) 53
BisI GCNGC 3 cut(s) 106, 973, 981
BlpI GCTNAGC 1 cut(s) 976
BlsI GCNGC 3 cut(s) 107, 974, 982
Bme18I GGWCC 5 cut(s) 300, 517, 953, 1031, 1036
BmeT110I CYCGRG 1 cut(s) 1124
BmgT120I GGNCC 6 cut(s) 300, 517, 792, 953, 1031, 1036
BmiI GGNNCC 4 cut(s) 418, 538, 872, 954
BmsI GCATC 6 cut(s) 391, 513, 518, 925, 930, 982
Bpu1102I GCTNAGC 1 cut(s) 976
Bsa29I ATCGAT 1 cut(s) 767
BsaAI YACGTR 1 cut(s) 946
BsaI GGTCTC 1 cut(s) 125
BsaJI CCNNGG 3 cut(s) 513, 631, 1039
BsaWI WCCGGW 4 cut(s) 423, 475, 1033, 1151
Bsc4I CCNNNNNNNGG 3 cut(s) 228, 580, 1040
Bse118I RCCGGY 1 cut(s) 929
Bse3DI GCAATG 2 cut(s) 132, 844
BseAI TCCGGA 1 cut(s) 1033
BseCI ATCGAT 1 cut(s) 767
BseDI CCNNGG 3 cut(s) 513, 631, 1039
BseGI GGATG 5 cut(s) 420, 533, 997, 1108, 1119
BseLI CCNNNNNNNGG 3 cut(s) 228, 580, 1040
BseMI GCAATG 2 cut(s) 132, 844
BseMII CTCAG 3 cut(s) 79, 990, 1175
BsgI GTGCAG 1 cut(s) 1157
BshFI GGCC 4 cut(s) 392, 630, 794, 1260
BshNI GGYRCC 2 cut(s) 536, 870
BshVI ATCGAT 1 cut(s) 767
BsiHKCI CYCGRG 1 cut(s) 1124
BsiSI CCGG 5 cut(s) 424, 476, 930, 1034, 1152
BslFI GGGAC 1 cut(s) 928
BslI CCNNNNNNNGG 3 cut(s) 228, 580, 1040
BsmAI GTCTC 3 cut(s) 125, 275, 1038
BsmBI CGTCTC 1 cut(s) 275
BsmFI GGGAC 1 cut(s) 928
BsnI GGCC 4 cut(s) 392, 630, 794, 1260
Bso31I GGTCTC 1 cut(s) 125
BsoBI CYCGRG 1 cut(s) 1124
Bsp1286I GDGCHC 1 cut(s) 238
Bsp13I TCCGGA 1 cut(s) 1033
Bsp143I GATC 7 cut(s) 53, 191, 241, 259, 379, 757, 1228
Bsp1720I GCTNAGC 1 cut(s) 976
Bsp19I CCATGG 1 cut(s) 631
BspACI CCGC 6 cut(s) 105, 108, 599, 972, 980, 995
BspANI GGCC 4 cut(s) 392, 630, 794, 1260
BspCNI CTCAG 3 cut(s) 78, 989, 1176
BspDI ATCGAT 1 cut(s) 767
BspEI TCCGGA 1 cut(s) 1033
BspLI GGNNCC 4 cut(s) 418, 538, 872, 954
BspQI GCTCTTC 1 cut(s) 144
BspT107I GGYRCC 2 cut(s) 536, 870
BspTI CTTAAG 1 cut(s) 865
BspTNI GGTCTC 1 cut(s) 125
BsrDI GCAATG 2 cut(s) 132, 844
BsrFI RCCGGY 1 cut(s) 929
BssAI RCCGGY 1 cut(s) 929
BssECI CCNNGG 3 cut(s) 513, 631, 1039
BssMI GATC 7 cut(s) 53, 191, 241, 259, 379, 757, 1228
BssT1I CCWWGG 2 cut(s) 513, 631
Bst4CI ACNGT 3 cut(s) 919, 925, 1256
Bst6I CTCTTC 1 cut(s) 144
BstAFI CTTAAG 1 cut(s) 865
BstBAI YACGTR 1 cut(s) 946
BstC8I GCNNGC 1 cut(s) 931
BstDEI CTNAG 6 cut(s) 65, 487, 615, 653, 976, 1184
BstDSI CCRYGG 2 cut(s) 631, 1039
BstF5I GGATG 5 cut(s) 420, 533, 997, 1108, 1119
BstH2I RGCGCY 2 cut(s) 881, 986
BstHHI GCGC 2 cut(s) 880, 985
BstKTI GATC 7 cut(s) 56, 194, 244, 262, 382, 760, 1231
BstMAI GTCTC 3 cut(s) 125, 275, 1038
BstMBI GATC 7 cut(s) 53, 191, 241, 259, 379, 757, 1228
BstMWI GCNNNNNNNGC 4 cut(s) 122, 596, 935, 1135
BstSFI CTRYAG 3 cut(s) 9, 17, 924
BstX2I RGATCY 1 cut(s) 53
BstYI RGATCY 1 cut(s) 53
Bsu15I ATCGAT 1 cut(s) 767
BsuRI GGCC 4 cut(s) 392, 630, 794, 1260
BsuTUI ATCGAT 1 cut(s) 767
BtgI CCRYGG 2 cut(s) 631, 1039
BtgZI GCGATG 3 cut(s) 546, 948, 953
BtsCI GGATG 5 cut(s) 420, 533, 997, 1108, 1119
BtsIMutI CAGTG 2 cut(s) 559, 924
Cac8I GCNNGC 1 cut(s) 931
CaiI CAGNNNCTG 1 cut(s) 923
CfoI GCGC 2 cut(s) 880, 985
Cfr10I RCCGGY 1 cut(s) 929
Cfr13I GGNCC 6 cut(s) 300, 517, 792, 953, 1031, 1036
ClaI ATCGAT 1 cut(s) 767
Csp6I GTAC 4 cut(s) 619, 725, 871, 1249
CspCI CAANNNNNGTGG 2 cut(s) 115, 150
CviAII CATG 3 cut(s) 304, 632, 892
CviQI GTAC 4 cut(s) 619, 725, 871, 1249
DdeI CTNAG 6 cut(s) 65, 487, 615, 653, 976, 1184
DpnI GATC 7 cut(s) 55, 193, 243, 261, 381, 759, 1230
DpnII GATC 7 cut(s) 53, 191, 241, 259, 379, 757, 1228
EaeI YGGCCR 2 cut(s) 628, 1258
Eam1104I CTCTTC 1 cut(s) 144
EarI CTCTTC 1 cut(s) 144
EciI GGCGGA 1 cut(s) 123
Eco130I CCWWGG 2 cut(s) 513, 631
Eco147I AGGCCT 1 cut(s) 392
Eco24I GRGCYC 1 cut(s) 238
Eco31I GGTCTC 1 cut(s) 125
Eco47I GGWCC 5 cut(s) 300, 517, 953, 1031, 1036
Eco57I CTGAAG 1 cut(s) 828
Eco72I CACGTG 1 cut(s) 946
Eco88I CYCGRG 1 cut(s) 1124
EcoO109I RGGNCCY 1 cut(s) 517
EcoRI GAATTC 1 cut(s) 332
EcoT14I CCWWGG 2 cut(s) 513, 631
EcoT38I GRGCYC 1 cut(s) 238
ErhI CCWWGG 2 cut(s) 513, 631
Esp3I CGTCTC 1 cut(s) 275
FaeI CATG 3 cut(s) 307, 635, 895
FalI AAGNNNNNCTT 2 cut(s) 676, 708
FaqI GGGAC 1 cut(s) 928
FatI CATG 3 cut(s) 303, 631, 891
FauNDI CATATG 1 cut(s) 729
FbaI TGATCA 2 cut(s) 241, 1228
FblI GTMKAC 1 cut(s) 351
Fnu4HI GCNGC 3 cut(s) 106, 973, 981
FokI GGATG 5 cut(s) 407, 540, 1004, 1115, 1126
FriOI GRGCYC 1 cut(s) 238
Fsp4HI GCNGC 3 cut(s) 106, 973, 981
FspBI CTAG 7 cut(s) 722, 986, 1008, 1016, 1020, 1245, 1267
GlaI GCGC 2 cut(s) 879, 984
GluI GCNGC 3 cut(s) 106, 973, 981
HaeII RGCGCY 2 cut(s) 881, 986
HaeIII GGCC 4 cut(s) 392, 630, 794, 1260
HapII CCGG 5 cut(s) 424, 476, 930, 1034, 1152
HhaI GCGC 2 cut(s) 880, 985
Hin1II CATG 3 cut(s) 307, 635, 895
Hin6I GCGC 2 cut(s) 878, 983
HinP1I GCGC 2 cut(s) 878, 983
HinfI GANTC 5 cut(s) 111, 207, 764, 775, 845
HpaII CCGG 5 cut(s) 424, 476, 930, 1034, 1152
HphI GGTGA 2 cut(s) 269, 613
Hpy166II GTNNAC 3 cut(s) 352, 484, 612
Hpy188I TCNGA 9 cut(s) 58, 89, 196, 212, 400, 411, 808, 886, 1185
Hpy188III TCNNGA 4 cut(s) 520, 761, 1034, 1226
Hpy8I GTNNAC 3 cut(s) 352, 484, 612
Hpy99I CGWCG 2 cut(s) 104, 912
HpyAV CCTTC 4 cut(s) 191, 275, 416, 678
HpyCH4III ACNGT 3 cut(s) 919, 925, 1256
HpyCH4IV ACGT 5 cut(s) 467, 945, 1108, 1156, 1169
HpyCH4V TGCA 5 cut(s) 565, 733, 837, 943, 1138
HpyF10VI GCNNNNNNNGC 4 cut(s) 122, 596, 935, 1135
HpyF3I CTNAG 6 cut(s) 65, 487, 615, 653, 976, 1184
HpySE526I ACGT 5 cut(s) 467, 945, 1108, 1156, 1169
Hsp92II CATG 3 cut(s) 307, 635, 895
HspAI GCGC 2 cut(s) 878, 983
Kpn2I TCCGGA 1 cut(s) 1033
KpnI GGTACC 1 cut(s) 874
KroI GCCGGC 1 cut(s) 929
KroNI GCCGGC 1 cut(s) 931
Ksp22I TGATCA 2 cut(s) 241, 1228
Kzo9I GATC 7 cut(s) 53, 191, 241, 259, 379, 757, 1228
LguI GCTCTTC 1 cut(s) 144
LmnI GCTCC 1 cut(s) 200
LweI GCATC 6 cut(s) 391, 513, 518, 925, 930, 982
MaeI CTAG 7 cut(s) 722, 986, 1008, 1016, 1020, 1245, 1267
MaeII ACGT 5 cut(s) 467, 945, 1108, 1156, 1169
MaeIII GTNAC 3 cut(s) 3, 919, 1209
MalI GATC 7 cut(s) 55, 193, 243, 261, 381, 759, 1230
MboI GATC 7 cut(s) 53, 191, 241, 259, 379, 757, 1228
MboII GAAGA 4 cut(s) 131, 270, 821, 1091
MflI RGATCY 1 cut(s) 53
MhlI GDGCHC 1 cut(s) 238
MluCI AATT 5 cut(s) 274, 332, 541, 902, 1233
MlyI GAGTC 1 cut(s) 854
MmeI TCCRAC 2 cut(s) 150, 209
MnlI CCTC 6 cut(s) 73, 382, 599, 640, 982, 1179
MroI TCCGGA 1 cut(s) 1033
MroNI GCCGGC 1 cut(s) 929
MseI TTAA 7 cut(s) 26, 369, 569, 677, 851, 866, 1052
MspA1I CMGCKG 1 cut(s) 980
MspCI CTTAAG 1 cut(s) 865
MspI CCGG 5 cut(s) 424, 476, 930, 1034, 1152
MwoI GCNNNNNNNGC 4 cut(s) 122, 596, 935, 1135
NaeI GCCGGC 1 cut(s) 931
NcoI CCATGG 1 cut(s) 631
NdeI CATATG 1 cut(s) 729
NdeII GATC 7 cut(s) 53, 191, 241, 259, 379, 757, 1228
NgoMIV GCCGGC 1 cut(s) 929
NlaIII CATG 3 cut(s) 307, 635, 895
NlaIV GGNNCC 4 cut(s) 418, 538, 872, 954
NmuCI GTSAC 1 cut(s) 919
PceI AGGCCT 1 cut(s) 392
PciSI GCTCTTC 1 cut(s) 144
PcsI WCGNNNNNNNCGW 1 cut(s) 1166
PdiI GCCGGC 1 cut(s) 931
PfeI GAWTC 4 cut(s) 111, 207, 764, 775
PflMI CCANNNNNTGG 1 cut(s) 228
PkrI GCNGC 3 cut(s) 107, 974, 982
PleI GAGTC 1 cut(s) 853
PmaCI CACGTG 1 cut(s) 946
PmlI CACGTG 1 cut(s) 946
PpsI GAGTC 1 cut(s) 853
Ppu21I YACGTR 1 cut(s) 946
PpuMI RGGWCCY 1 cut(s) 517
Psp5II RGGWCCY 1 cut(s) 517
PspCI CACGTG 1 cut(s) 946
PspN4I GGNNCC 4 cut(s) 418, 538, 872, 954
PspPI GGNCC 6 cut(s) 300, 517, 792, 953, 1031, 1036
PspPPI RGGWCCY 1 cut(s) 517
PstNI CAGNNNCTG 1 cut(s) 923
PsuI RGATCY 1 cut(s) 53
RsaI GTAC 4 cut(s) 620, 726, 872, 1250
RsaNI GTAC 4 cut(s) 619, 725, 871, 1249
SapI GCTCTTC 1 cut(s) 144
SaqAI TTAA 7 cut(s) 26, 369, 569, 677, 851, 866, 1052
SatI GCNGC 3 cut(s) 106, 973, 981
Sau3AI GATC 7 cut(s) 53, 191, 241, 259, 379, 757, 1228
Sau96I GGNCC 6 cut(s) 300, 517, 792, 953, 1031, 1036
SchI GAGTC 1 cut(s) 854
SduI GDGCHC 1 cut(s) 238
SfaNI GCATC 6 cut(s) 391, 513, 518, 925, 930, 982
SfcI CTRYAG 3 cut(s) 9, 17, 924
SinI GGWCC 5 cut(s) 300, 517, 953, 1031, 1036
SmlI CTYRAG 1 cut(s) 865
SmoI CTYRAG 1 cut(s) 865
Sse9I AATT 5 cut(s) 274, 332, 541, 902, 1233
SseBI AGGCCT 1 cut(s) 392
SsiI CCGC 6 cut(s) 105, 108, 599, 972, 980, 995
SspMI CTAG 7 cut(s) 722, 986, 1008, 1016, 1020, 1245, 1267
StuI AGGCCT 1 cut(s) 392
StyI CCWWGG 2 cut(s) 513, 631
TaaI ACNGT 3 cut(s) 919, 925, 1256
TaiI ACGT 5 cut(s) 470, 948, 1111, 1159, 1172
TaqI TCGA 3 cut(s) 767, 784, 1064
TasI AATT 5 cut(s) 274, 332, 541, 902, 1233
TatI WGTACW 1 cut(s) 724
TauI GCSGC 3 cut(s) 108, 975, 983
TfiI GAWTC 4 cut(s) 111, 207, 764, 775
Tru1I TTAA 7 cut(s) 26, 369, 569, 677, 851, 866, 1052
Tru9I TTAA 7 cut(s) 26, 369, 569, 677, 851, 866, 1052
TscAI CASTG 2 cut(s) 559, 924
TseFI GTSAC 1 cut(s) 919
Tsp45I GTSAC 1 cut(s) 919
TspDTI ATGAA 3 cut(s) 131, 1082, 1119
TspGWI ACGGA 4 cut(s) 313, 713, 945, 1056
TspRI CASTG 2 cut(s) 559, 924
Van91I CCANNNNNTGG 1 cut(s) 228
Vha464I CTTAAG 1 cut(s) 865
VpaK11BI GGWCC 5 cut(s) 300, 517, 953, 1031, 1036
XapI RAATTY 3 cut(s) 332, 902, 1233
XmiI GTMKAC 1 cut(s) 351
XspI CTAG 7 cut(s) 722, 986, 1008, 1016, 1020, 1245, 1267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.