Rmu_sc0003600.1_g000007

FAD binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003600.1
OG0002765
Physical Location & Seq
Reverse (-)
19076 .. 21067
1992 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003600.1_g000007.1.cds

Sequence Viewer

Length: 1170 bp
atggatatggcaggggatacaagagaagatgttgtgattgtgggtggtgggatttcaggcctcgccactgctcttgctcttcacagaaagggcataagaagcttggtcctagaaaaatcaaagactttacaagccaccggaggtatcgttgtgcattctaatggttggcatgcccttgaacagctcggggacaattctcttcacttgataatggcaagacacaagaaatgcccatttcgtgagaaagaagaaatgcgatgtgtgagaaggactgatctggttaatattttggctcaaaacctgccacttaacactgtacgttatggctccaacgtactttctattgagttggatcctgtaacatcttatccagttcttcaacttcaaaatggaactagcttaaacgccaaggttgtgatcggatgcgacggagtgaactccaagataacaaatctgattggggtgaaggccccgagtagactcaacgtaatggcagtaagaagcattacaatatatccaaatggccataaatttggcagtgagtttaagatgataaaaaaaggtgatgttacggtcggagtaatacccatgaccaccaaccaggtgtattggttcatcactggaaaatatttttcacaagaaggtttcaagatctccaaaagttcgaaattgattatgaacttctcaactgagtcagtgaaggattttcctagtagcattaaagagatggtcaacaattgctggctagagtacttacatttctcagagtacatcaaataccgatcaccatgggacatactatgtacacactttcgggtaggaacagtgacagttgcaggagatgccttgcatgcaatgactccgttcattgctcaaggtggctcagccgctttggaagacgcagttgtccttgctaggtgcttcgcacgaaaggctgtcgtcggtggtccaggtgaaataggaagcaaacttatggtagagaaagcatttgatgaatacctaaaagagcggaaaactcgacttctaagactcactatcgaatcaaccctactcggaaagatggaagaaacttcatcaaagctcatcaagctcttatatattgtgctcatagtggtcctatttcgcaactcatttgctcacgctcgctatgactgtggcaaactcacgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3

Protein Analysis

389

Amino Acids

43.11

Weight (kDa)

9.4

Isoelectric Point (pI)

32.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 905
Acc36I ACCTGC 1 cut(s) 309
AccBSI CCGCTC 1 cut(s) 1009
AccI GTMKAC 1 cut(s) 478
AciI CCGC 2 cut(s) 888, 1009
AclWI GGATC 2 cut(s) 347, 360
AcoI YGGCCR 1 cut(s) 523
AcsI RAATTY 1 cut(s) 530
AcvI CACGTG 1 cut(s) 1167
AfaI GTAC 5 cut(s) 318, 336, 752, 770, 805
AgsI TTSAA 4 cut(s) 179, 380, 386, 649
AjnI CCWGG 2 cut(s) 600, 949
AluBI AGCT 5 cut(s) 102, 184, 399, 1081, 1090
AluI AGCT 5 cut(s) 102, 184, 399, 1081, 1090
Alw21I GWGCWC 1 cut(s) 1107
AlwI GGATC 2 cut(s) 347, 360
Ama87I CYCGRG 2 cut(s) 185, 472
AoxI GGCC 3 cut(s) 58, 468, 523
ApoI RAATTY 1 cut(s) 530
AspS9I GGNCC 4 cut(s) 106, 469, 947, 1114
AsuHPI GGTGA 4 cut(s) 475, 575, 777, 965
AsuII TTCGAA 1 cut(s) 665
AvaI CYCGRG 2 cut(s) 185, 472
AvaII GGWCC 3 cut(s) 106, 947, 1114
BalI TGGCCA 1 cut(s) 525
BamHI GGATCC 1 cut(s) 352
BbrPI CACGTG 1 cut(s) 1167
BbsI GAAGAC 1 cut(s) 903
Bbv12I GWGCWC 1 cut(s) 1107
BccI CCATC 2 cut(s) 721, 1054
BciT130I CCWGG 2 cut(s) 602, 951
BciVI GTATCC 1 cut(s) 10
BfaI CTAG 5 cut(s) 110, 396, 711, 746, 915
BfuAI ACCTGC 1 cut(s) 309
BfuI GTATCC 1 cut(s) 10
BglII AGATCT 1 cut(s) 651
BisI GCNGC 1 cut(s) 888
BlpI GCTNAGC 1 cut(s) 883
BlsI GCNGC 1 cut(s) 889
BmcAI AGTACT 1 cut(s) 752
Bme1390I CCNGG 2 cut(s) 602, 951
Bme18I GGWCC 3 cut(s) 106, 947, 1114
BmeT110I CYCGRG 2 cut(s) 185, 472
BmgT120I GGNCC 4 cut(s) 106, 469, 947, 1114
BmiI GGNNCC 3 cut(s) 328, 354, 471
BmrFI CCNGG 2 cut(s) 602, 951
BmsI GCATC 2 cut(s) 413, 832
BpiI GAAGAC 1 cut(s) 903
Bpu1102I GCTNAGC 1 cut(s) 883
Bpu14I TTCGAA 1 cut(s) 665
BpuEI CTTGAG 1 cut(s) 858
BsaAI YACGTR 1 cut(s) 1167
BsaJI CCNNGG 2 cut(s) 408, 788
BsaWI WCCGGW 1 cut(s) 137
BsaXI ACNNNNNCTCC 2 cut(s) 132, 162
Bse1I ACTGG 2 cut(s) 371, 625
Bse3DI GCAATG 2 cut(s) 861, 867
BseBI CCWGG 2 cut(s) 602, 951
BseDI CCNNGG 2 cut(s) 408, 788
BseGI GGATG 1 cut(s) 428
BseMI GCAATG 2 cut(s) 861, 867
BseMII CTCAG 3 cut(s) 681, 777, 897
BseNI ACTGG 2 cut(s) 371, 625
Bsh1285I CGRYCG 1 cut(s) 576
BshFI GGCC 3 cut(s) 60, 470, 525
BsiEI CGRYCG 1 cut(s) 576
BsiHKAI GWGCWC 1 cut(s) 1107
BsiHKCI CYCGRG 2 cut(s) 185, 472
BsiSI CCGG 1 cut(s) 138
BslFI GGGAC 2 cut(s) 203, 806
BsmFI GGGAC 2 cut(s) 203, 806
BsmI GAATGC 1 cut(s) 154
BsnI GGCC 3 cut(s) 60, 470, 525
BsoBI CYCGRG 2 cut(s) 185, 472
Bsp119I TTCGAA 1 cut(s) 665
Bsp1286I GDGCHC 1 cut(s) 1107
Bsp1407I TGTACA 1 cut(s) 803
Bsp143I GATC 5 cut(s) 274, 352, 417, 651, 782
Bsp1720I GCTNAGC 1 cut(s) 883
Bsp19I CCATGG 1 cut(s) 788
BspACI CCGC 2 cut(s) 888, 1009
BspANI GGCC 3 cut(s) 60, 470, 525
BspCNI CTCAG 3 cut(s) 682, 776, 896
BspLI GGNNCC 3 cut(s) 328, 354, 471
BspMI ACCTGC 1 cut(s) 309
BspPI GGATC 2 cut(s) 347, 360
BspQI GCTCTTC 1 cut(s) 84
BspT104I TTCGAA 1 cut(s) 665
BsrBI CCGCTC 1 cut(s) 1009
BsrDI GCAATG 2 cut(s) 861, 867
BsrGI TGTACA 1 cut(s) 803
BsrI ACTGG 2 cut(s) 371, 625
BssECI CCNNGG 2 cut(s) 408, 788
BssMI GATC 5 cut(s) 274, 352, 417, 651, 782
BssT1I CCWWGG 2 cut(s) 408, 788
Bst2UI CCWGG 2 cut(s) 602, 951
Bst4CI ACNGT 5 cut(s) 316, 574, 826, 832, 1154
Bst6I CTCTTC 2 cut(s) 84, 204
BstAPI GCANNNNNTGC 1 cut(s) 842
BstAUI TGTACA 1 cut(s) 803
BstBAI YACGTR 1 cut(s) 1167
BstBI TTCGAA 1 cut(s) 665
BstC8I GCNNGC 4 cut(s) 171, 743, 852, 1144
BstDEI CTNAG 4 cut(s) 690, 763, 883, 1025
BstDSI CCRYGG 1 cut(s) 788
BstF5I GGATG 1 cut(s) 428
BstKTI GATC 5 cut(s) 277, 355, 420, 654, 785
BstMBI GATC 5 cut(s) 274, 352, 417, 651, 782
BstMCI CGRYCG 1 cut(s) 576
BstMWI GCNNNNNNNGC 5 cut(s) 99, 842, 851, 932, 1087
BstNI CCWGG 2 cut(s) 602, 951
BstNSI RCATGY 2 cut(s) 173, 854
BstSCI CCNGG 2 cut(s) 600, 949
BstV2I GAAGAC 1 cut(s) 903
BstX2I RGATCY 2 cut(s) 352, 651
BstXI CCANNNNNNTGG 1 cut(s) 533
BstYI RGATCY 2 cut(s) 352, 651
BsuI GTATCC 1 cut(s) 10
BsuRI GGCC 3 cut(s) 60, 470, 525
BtgI CCRYGG 1 cut(s) 788
BtgZI GCGATG 1 cut(s) 271
BtsCI GGATG 1 cut(s) 428
BtsI GCAGTG 2 cut(s) 66, 544
BtsIMutI CAGTG 6 cut(s) 66, 312, 544, 618, 702, 831
BveI ACCTGC 1 cut(s) 309
Cac8I GCNNGC 4 cut(s) 171, 743, 852, 1144
Cfr13I GGNCC 4 cut(s) 106, 469, 947, 1114
CseI GACGC 1 cut(s) 908
CsiI ACCWGGT 1 cut(s) 600
Csp6I GTAC 5 cut(s) 317, 335, 751, 769, 804
CspCI CAANNNNNGTGG 2 cut(s) 55, 90
CviAII CATG 4 cut(s) 170, 589, 789, 851
CviQI GTAC 5 cut(s) 317, 335, 751, 769, 804
DdeI CTNAG 4 cut(s) 690, 763, 883, 1025
DpnI GATC 5 cut(s) 276, 354, 419, 653, 784
DpnII GATC 5 cut(s) 274, 352, 417, 651, 782
DrdI GACNNNNNNGTC 1 cut(s) 905
DseDI GACNNNNNNGTC 1 cut(s) 905
EaeI YGGCCR 1 cut(s) 523
Eam1104I CTCTTC 2 cut(s) 84, 204
EarI CTCTTC 2 cut(s) 84, 204
Eco130I CCWWGG 2 cut(s) 408, 788
Eco147I AGGCCT 1 cut(s) 60
Eco47I GGWCC 3 cut(s) 106, 947, 1114
Eco72I CACGTG 1 cut(s) 1167
Eco88I CYCGRG 2 cut(s) 185, 472
EcoO109I RGGNCCY 1 cut(s) 469
EcoRII CCWGG 2 cut(s) 600, 949
EcoT14I CCWWGG 2 cut(s) 408, 788
ErhI CCWWGG 2 cut(s) 408, 788
FaeI CATG 4 cut(s) 173, 592, 792, 854
FaqI GGGAC 2 cut(s) 203, 806
FatI CATG 4 cut(s) 169, 588, 788, 850
FblI GTMKAC 1 cut(s) 478
Fnu4HI GCNGC 1 cut(s) 888
FokI GGATG 1 cut(s) 435
Fsp4HI GCNGC 1 cut(s) 888
FspBI CTAG 5 cut(s) 110, 396, 711, 746, 915
GluI GCNGC 1 cut(s) 888
HaeIII GGCC 3 cut(s) 60, 470, 525
HapII CCGG 1 cut(s) 138
HgaI GACGC 1 cut(s) 908
Hin1II CATG 4 cut(s) 173, 592, 792, 854
HincII GTYRAC 1 cut(s) 733
HindII GTYRAC 1 cut(s) 733
HindIII AAGCTT 1 cut(s) 100
HinfI GANTC 5 cut(s) 480, 692, 859, 1029, 1040
HpaII CCGG 1 cut(s) 138
HphI GGTGA 4 cut(s) 475, 575, 777, 965
Hpy166II GTNNAC 4 cut(s) 436, 479, 733, 806
Hpy188I TCNGA 5 cut(s) 422, 456, 578, 766, 1055
Hpy188III TCNNGA 2 cut(s) 239, 649
Hpy8I GTNNAC 4 cut(s) 436, 479, 733, 806
Hpy99I CGWCG 2 cut(s) 431, 944
HpyAV CCTTC 4 cut(s) 261, 460, 635, 694
HpyCH4III ACNGT 5 cut(s) 316, 574, 826, 832, 1154
HpyCH4IV ACGT 4 cut(s) 319, 333, 486, 1166
HpyCH4V TGCA 4 cut(s) 154, 836, 850, 854
HpyF10VI GCNNNNNNNGC 5 cut(s) 99, 842, 851, 932, 1087
HpyF3I CTNAG 4 cut(s) 690, 763, 883, 1025
HpySE526I ACGT 4 cut(s) 319, 333, 486, 1166
Hsp92II CATG 4 cut(s) 173, 592, 792, 854
Kzo9I GATC 5 cut(s) 274, 352, 417, 651, 782
LguI GCTCTTC 1 cut(s) 84
LmnI GCTCC 1 cut(s) 332
LweI GCATC 2 cut(s) 413, 832
MabI ACCWGGT 1 cut(s) 600
MaeI CTAG 5 cut(s) 110, 396, 711, 746, 915
MaeII ACGT 4 cut(s) 319, 333, 486, 1166
MaeIII GTNAC 3 cut(s) 358, 568, 826
MalI GATC 5 cut(s) 276, 354, 419, 653, 784
MbiI CCGCTC 1 cut(s) 1009
MboI GATC 5 cut(s) 274, 352, 417, 651, 782
MboII GAAGA 7 cut(s) 38, 71, 191, 260, 368, 908, 1076
MfeI CAATTG 1 cut(s) 736
MflI RGATCY 2 cut(s) 352, 651
MhlI GDGCHC 1 cut(s) 1107
MlsI TGGCCA 1 cut(s) 525
MluCI AATT 4 cut(s) 193, 530, 668, 736
MluNI TGGCCA 1 cut(s) 525
MlyI GAGTC 4 cut(s) 474, 701, 853, 1023
MmeI TCCRAC 3 cut(s) 330, 354, 556
MnlI CCTC 2 cut(s) 71, 134
Mox20I TGGCCA 1 cut(s) 525
MscI TGGCCA 1 cut(s) 525
MseI TTAA 5 cut(s) 282, 309, 401, 546, 720
MslI CAYNNNNRTG 1 cut(s) 159
Msp20I TGGCCA 1 cut(s) 525
MspI CCGG 1 cut(s) 138
MspR9I CCNGG 2 cut(s) 602, 951
MunI CAATTG 1 cut(s) 736
Mva1269I GAATGC 1 cut(s) 154
MvaI CCWGG 2 cut(s) 602, 951
MwoI GCNNNNNNNGC 5 cut(s) 99, 842, 851, 932, 1087
NcoI CCATGG 1 cut(s) 788
NdeII GATC 5 cut(s) 274, 352, 417, 651, 782
NlaIII CATG 4 cut(s) 173, 592, 792, 854
NlaIV GGNNCC 3 cut(s) 328, 354, 471
NmuCI GTSAC 1 cut(s) 826
NspI RCATGY 2 cut(s) 173, 854
NspV TTCGAA 1 cut(s) 665
PaeI GCATGC 2 cut(s) 173, 854
PceI AGGCCT 1 cut(s) 60
PciSI GCTCTTC 1 cut(s) 84
PctI GAATGC 1 cut(s) 154
PfeI GAWTC 1 cut(s) 1040
PkrI GCNGC 1 cut(s) 889
PleI GAGTC 4 cut(s) 474, 700, 853, 1023
PmaCI CACGTG 1 cut(s) 1167
PmlI CACGTG 1 cut(s) 1167
PpsI GAGTC 4 cut(s) 474, 700, 853, 1023
Ppu21I YACGTR 1 cut(s) 1167
Psp6I CCWGG 2 cut(s) 600, 949
PspCI CACGTG 1 cut(s) 1167
PspGI CCWGG 2 cut(s) 600, 949
PspN4I GGNNCC 3 cut(s) 328, 354, 471
PspPI GGNCC 4 cut(s) 106, 469, 947, 1114
PsuI RGATCY 2 cut(s) 352, 651
RsaI GTAC 5 cut(s) 318, 336, 752, 770, 805
RsaNI GTAC 5 cut(s) 317, 335, 751, 769, 804
RseI CAYNNNNRTG 1 cut(s) 159
SapI GCTCTTC 1 cut(s) 84
SaqAI TTAA 5 cut(s) 282, 309, 401, 546, 720
SatI GCNGC 1 cut(s) 888
Sau3AI GATC 5 cut(s) 274, 352, 417, 651, 782
Sau96I GGNCC 4 cut(s) 106, 469, 947, 1114
ScaI AGTACT 1 cut(s) 752
SchI GAGTC 4 cut(s) 474, 701, 853, 1023
ScrFI CCNGG 2 cut(s) 602, 951
SduI GDGCHC 1 cut(s) 1107
SexAI ACCWGGT 1 cut(s) 600
SfaNI GCATC 2 cut(s) 413, 832
SfuI TTCGAA 1 cut(s) 665
SinI GGWCC 3 cut(s) 106, 947, 1114
SmiMI CAYNNNNRTG 1 cut(s) 159
SmlI CTYRAG 1 cut(s) 873
SmoI CTYRAG 1 cut(s) 873
SphI GCATGC 2 cut(s) 173, 854
Sse9I AATT 4 cut(s) 193, 530, 668, 736
SseBI AGGCCT 1 cut(s) 60
SsiI CCGC 2 cut(s) 888, 1009
SspI AATATT 2 cut(s) 286, 629
SspMI CTAG 5 cut(s) 110, 396, 711, 746, 915
StuI AGGCCT 1 cut(s) 60
StyD4I CCNGG 2 cut(s) 600, 949
StyI CCWWGG 2 cut(s) 408, 788
TaaI ACNGT 5 cut(s) 316, 574, 826, 832, 1154
TaiI ACGT 4 cut(s) 322, 336, 489, 1169
TaqI TCGA 3 cut(s) 665, 1018, 1038
TasI AATT 4 cut(s) 193, 530, 668, 736
TatI WGTACW 3 cut(s) 750, 768, 803
TauI GCSGC 1 cut(s) 890
TfiI GAWTC 1 cut(s) 1040
Tru1I TTAA 5 cut(s) 282, 309, 401, 546, 720
Tru9I TTAA 5 cut(s) 282, 309, 401, 546, 720
TscAI CASTG 6 cut(s) 73, 319, 544, 625, 702, 831
TseFI GTSAC 1 cut(s) 826
Tsp45I GTSAC 1 cut(s) 826
TspDTI ATGAA 5 cut(s) 604, 692, 856, 1008, 1062
TspGWI ACGGA 2 cut(s) 444, 852
TspRI CASTG 6 cut(s) 73, 319, 544, 625, 702, 831
VpaK11BI GGWCC 3 cut(s) 106, 947, 1114
XapI RAATTY 1 cut(s) 530
XceI RCATGY 2 cut(s) 173, 854
XmiI GTMKAC 1 cut(s) 478
XspI CTAG 5 cut(s) 110, 396, 711, 746, 915
ZrmI AGTACT 1 cut(s) 752
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.