Rh2BG032800

FAD binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0002765
Physical Location & Seq
Reverse (-)
2275621 .. 2278923
3303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG032800.1

Sequence Viewer

Length: 885 bp
ATGAATATCATGGCTGATAATCTGCCAAAGAACACCGTACGTTTTGGGTGCAACGTACTTTCTATCGAGTTGGATCCCATAACTTCTTCTCCAGTTCTTCAACTTCAAGATGGAACCAGTTTGAATGCCAAGGCTGTGATCGGATGCGACGGAGTGAACTCTACGATTTCATATATGATGGGGGCGACGGCTACAAATATATTCAACGTATGTGGGATAAGAGGTTTCACAAGTTATCCGAGTGGTCATGAATTCGGCAGTGAGTTCAAACTCACCAAAAAAGATGATGTTCAAGTCGGACTATTGCCCATGACCACCAACCTGGTTTATTGGTTCCTTACTCGCAAATATATATCTCGCAAGTCCAAGATCTCCCACAGCCAGAAATTAATTGGGGATATGGCAGCTGCATCAGTGAAGGACTTTCCTTCTAGCATCAAAGAGATGGTAGAGAATTGCTCACTAGAGTCTCTACATCTTTCAGACTACATGAGATACCGACCAACGTGTGACATACTACGAAGACGATTTCGGGTGGGAACAGTAACAGTGGCAGGAGATGCCTGGCATGCAATGGCTCCGTTCACTGCTCAAGGTGGCTCAGCCTCTTTGGAAGATGCAGTTGTGCTGGCTAGGTGCTTGGCACGAAAGACTATTGTTGGTATTCCAAGTGGAAGAGTAAGCAAGACGATGGTAGAAGAAGCACTTGATGAATACCTAAAAGAGCGGAAACCGCGAGTTCTAAGACTATCTTTGCAGACGTACCTAATTGGGAAAATGCATGATACTTCATCAAAATTTATCAAGTTCATATGCATTGTGTTCATGGCGATCATATTCTACGACTCGCATGGACATACTCGTTATGATTGTGGTACCCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3

Protein Analysis

294

Amino Acids

32.65

Weight (kDa)

9.04

Isoelectric Point (pI)

40.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 8 - 247 3.6e-13 FAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 875
AccB1I GGYRCC 1 cut(s) 875
AccBSI CCGCTC 1 cut(s) 727
AccII CGCG 1 cut(s) 736
AciI CCGC 2 cut(s) 727, 734
AclWI GGATC 2 cut(s) 68, 81
AcsI RAATTY 2 cut(s) 251, 797
AfaI GTAC 4 cut(s) 39, 57, 764, 877
AflIII ACRYGT 1 cut(s) 506
AgsI TTSAA 6 cut(s) 101, 107, 124, 205, 268, 293
AjnI CCWGG 2 cut(s) 321, 563
AluBI AGCT 1 cut(s) 407
AluI AGCT 1 cut(s) 407
Alw26I GTCTC 1 cut(s) 474
AlwI GGATC 2 cut(s) 68, 81
ApeKI GCWGC 2 cut(s) 404, 407
ApoI RAATTY 2 cut(s) 251, 797
AseI ATTAAT 1 cut(s) 389
Asp718I GGTACC 1 cut(s) 875
AsuHPI GGTGA 1 cut(s) 265
BamHI GGATCC 1 cut(s) 73
BanI GGYRCC 1 cut(s) 875
BbsI GAAGAC 1 cut(s) 529
BbvI GCAGC 2 cut(s) 394, 416
BccI CCATC 4 cut(s) 104, 172, 439, 685
BceAI ACGGC 1 cut(s) 204
BciT130I CCWGG 2 cut(s) 323, 565
BcoDI GTCTC 1 cut(s) 474
BfaI CTAG 3 cut(s) 432, 464, 633
BglII AGATCT 1 cut(s) 369
BisI GCNGC 2 cut(s) 405, 408
BlpI GCTNAGC 1 cut(s) 601
BlsI GCNGC 2 cut(s) 406, 409
Bme1390I CCNGG 2 cut(s) 323, 565
BmiI GGNNCC 5 cut(s) 75, 115, 335, 579, 877
BmrFI CCNGG 2 cut(s) 323, 565
BmsI GCATC 5 cut(s) 134, 419, 444, 550, 607
BpiI GAAGAC 1 cut(s) 529
BplI GAGNNNNNCTC 2 cut(s) 443, 475
BpmI CTGGAG 1 cut(s) 75
Bpu1102I GCTNAGC 1 cut(s) 601
BpuEI CTTGAG 1 cut(s) 576
BsaJI CCNNGG 1 cut(s) 129
BsaXI ACNNNNNCTCC 2 cut(s) 73, 103
Bse1I ACTGG 2 cut(s) 92, 117
Bse3DI GCAATG 1 cut(s) 579
BseBI CCWGG 2 cut(s) 323, 565
BseDI CCNNGG 1 cut(s) 129
BseGI GGATG 1 cut(s) 149
BseMI GCAATG 1 cut(s) 579
BseMII CTCAG 1 cut(s) 615
BseNI ACTGG 2 cut(s) 92, 117
BseXI GCAGC 2 cut(s) 394, 416
Bsh1236I CGCG 1 cut(s) 736
BshNI GGYRCC 1 cut(s) 875
BsiWI CGTACG 1 cut(s) 37
BsmAI GTCTC 1 cut(s) 474
BsmI GAATGC 1 cut(s) 130
Bsp143I GATC 4 cut(s) 73, 138, 369, 831
Bsp1720I GCTNAGC 1 cut(s) 601
BspACI CCGC 2 cut(s) 727, 734
BspCNI CTCAG 1 cut(s) 614
BspFNI CGCG 1 cut(s) 736
BspHI TCATGA 1 cut(s) 247
BspLI GGNNCC 5 cut(s) 75, 115, 335, 579, 877
BspPI GGATC 2 cut(s) 68, 81
BspT107I GGYRCC 1 cut(s) 875
BsrBI CCGCTC 1 cut(s) 727
BsrDI GCAATG 1 cut(s) 579
BsrI ACTGG 2 cut(s) 92, 117
BssECI CCNNGG 1 cut(s) 129
BssMI GATC 4 cut(s) 73, 138, 369, 831
BssT1I CCWWGG 1 cut(s) 129
Bst2UI CCWGG 2 cut(s) 323, 565
Bst4CI ACNGT 3 cut(s) 37, 544, 550
Bst6I CTCTTC 1 cut(s) 670
BstAPI GCANNNNNTGC 1 cut(s) 560
BstC8I GCNNGC 2 cut(s) 570, 630
BstDEI CTNAG 2 cut(s) 601, 743
BstF5I GGATG 1 cut(s) 149
BstFNI CGCG 1 cut(s) 736
BstKTI GATC 4 cut(s) 76, 141, 372, 834
BstMAI GTCTC 1 cut(s) 474
BstMBI GATC 4 cut(s) 73, 138, 369, 831
BstMWI GCNNNNNNNGC 3 cut(s) 560, 569, 733
BstNI CCWGG 2 cut(s) 323, 565
BstNSI RCATGY 1 cut(s) 572
BstSCI CCNGG 2 cut(s) 321, 563
BstUI CGCG 1 cut(s) 736
BstV1I GCAGC 2 cut(s) 394, 416
BstV2I GAAGAC 1 cut(s) 529
BstX2I RGATCY 2 cut(s) 73, 369
BstXI CCANNNNNNTGG 1 cut(s) 322
BstYI RGATCY 2 cut(s) 73, 369
BtsCI GGATG 1 cut(s) 149
BtsI GCAGTG 2 cut(s) 265, 585
BtsIMutI CAGTG 4 cut(s) 265, 420, 555, 585
Cac8I GCNNGC 2 cut(s) 570, 630
CciI TCATGA 1 cut(s) 247
CsiI ACCWGGT 1 cut(s) 321
Csp6I GTAC 4 cut(s) 38, 56, 763, 876
CspCI CAANNNNNGTGG 2 cut(s) 193, 228
CviAII CATG 8 cut(s) 10, 248, 310, 490, 569, 782, 826, 851
CviJI RGCY 9 cut(s) 14, 134, 191, 381, 407, 578, 600, 605, 632
CviKI_1 RGCY 9 cut(s) 14, 134, 191, 381, 407, 578, 600, 605, 632
CviQI GTAC 4 cut(s) 38, 56, 763, 876
DdeI CTNAG 2 cut(s) 601, 743
DpnI GATC 4 cut(s) 75, 140, 371, 833
DpnII GATC 4 cut(s) 73, 138, 369, 831
Eam1104I CTCTTC 1 cut(s) 670
EarI CTCTTC 1 cut(s) 670
Eco130I CCWWGG 1 cut(s) 129
EcoRI GAATTC 1 cut(s) 251
EcoRII CCWGG 2 cut(s) 321, 563
EcoT14I CCWWGG 1 cut(s) 129
EcoT22I ATGCAT 2 cut(s) 783, 818
ErhI CCWWGG 1 cut(s) 129
FaeI CATG 8 cut(s) 13, 251, 313, 493, 572, 785, 829, 854
FalI AAGNNNNNCTT 4 cut(s) 690, 722, 736, 768
FatI CATG 8 cut(s) 9, 247, 309, 489, 568, 781, 825, 850
FauNDI CATATG 1 cut(s) 812
Fnu4HI GCNGC 2 cut(s) 405, 408
FokI GGATG 1 cut(s) 156
Fsp4HI GCNGC 2 cut(s) 405, 408
FspBI CTAG 3 cut(s) 432, 464, 633
GluI GCNGC 2 cut(s) 405, 408
GsuI CTGGAG 1 cut(s) 75
Hin1II CATG 8 cut(s) 13, 251, 313, 493, 572, 785, 829, 854
HinfI GANTC 2 cut(s) 467, 845
HphI GGTGA 1 cut(s) 265
Hpy166II GTNNAC 2 cut(s) 157, 585
Hpy188I TCNGA 5 cut(s) 143, 240, 299, 484, 884
Hpy188III TCNNGA 2 cut(s) 107, 248
Hpy8I GTNNAC 2 cut(s) 157, 585
Hpy99I CGWCG 2 cut(s) 152, 190
HpyAV CCTTC 2 cut(s) 412, 438
HpyCH4III ACNGT 3 cut(s) 37, 544, 550
HpyCH4IV ACGT 5 cut(s) 40, 54, 207, 506, 761
HpyCH4V TGCA 7 cut(s) 51, 410, 572, 620, 757, 781, 816
HpyF10VI GCNNNNNNNGC 3 cut(s) 560, 569, 733
HpyF3I CTNAG 2 cut(s) 601, 743
HpySE526I ACGT 5 cut(s) 40, 54, 207, 506, 761
Hsp92II CATG 8 cut(s) 13, 251, 313, 493, 572, 785, 829, 854
KpnI GGTACC 1 cut(s) 879
Kzo9I GATC 4 cut(s) 73, 138, 369, 831
LmnI GCTCC 1 cut(s) 583
LpnPI CCDG 9 cut(s) 105, 130, 308, 335, 395, 540, 550, 577, 614
Lsp1109I GCAGC 2 cut(s) 394, 416
LweI GCATC 5 cut(s) 134, 419, 444, 550, 607
MabI ACCWGGT 1 cut(s) 321
MaeI CTAG 3 cut(s) 432, 464, 633
MaeII ACGT 5 cut(s) 40, 54, 207, 506, 761
MaeIII GTNAC 2 cut(s) 509, 544
MalI GATC 4 cut(s) 75, 140, 371, 833
MbiI CCGCTC 1 cut(s) 727
MboI GATC 4 cut(s) 73, 138, 369, 831
MboII GAAGA 6 cut(s) 78, 89, 534, 626, 687, 710
MflI RGATCY 2 cut(s) 73, 369
MluCI AATT 6 cut(s) 251, 386, 390, 454, 768, 797
MlyI GAGTC 2 cut(s) 476, 839
MmeI TCCRAC 2 cut(s) 51, 277
MnlI CCTC 2 cut(s) 215, 616
Mph1103I ATGCAT 2 cut(s) 783, 818
MseI TTAA 1 cut(s) 389
MspA1I CMGCKG 1 cut(s) 407
MspR9I CCNGG 2 cut(s) 323, 565
Mva1269I GAATGC 1 cut(s) 130
MvaI CCWGG 2 cut(s) 323, 565
MvnI CGCG 1 cut(s) 736
MwoI GCNNNNNNNGC 3 cut(s) 560, 569, 733
NdeI CATATG 1 cut(s) 812
NdeII GATC 4 cut(s) 73, 138, 369, 831
NlaIII CATG 8 cut(s) 13, 251, 313, 493, 572, 785, 829, 854
NlaIV GGNNCC 5 cut(s) 75, 115, 335, 579, 877
NmuCI GTSAC 1 cut(s) 509
NsiI ATGCAT 2 cut(s) 783, 818
NspI RCATGY 1 cut(s) 572
PaeI GCATGC 1 cut(s) 572
PagI TCATGA 1 cut(s) 247
PctI GAATGC 1 cut(s) 130
Pfl23II CGTACG 1 cut(s) 37
PkrI GCNGC 2 cut(s) 406, 409
PleI GAGTC 2 cut(s) 475, 839
PpsI GAGTC 2 cut(s) 475, 839
PshBI ATTAAT 1 cut(s) 389
Psp6I CCWGG 2 cut(s) 321, 563
PspGI CCWGG 2 cut(s) 321, 563
PspLI CGTACG 1 cut(s) 37
PspN4I GGNNCC 5 cut(s) 75, 115, 335, 579, 877
PsuI RGATCY 2 cut(s) 73, 369
PvuII CAGCTG 1 cut(s) 407
RsaI GTAC 4 cut(s) 39, 57, 764, 877
RsaNI GTAC 4 cut(s) 38, 56, 763, 876
SaqAI TTAA 1 cut(s) 389
SatI GCNGC 2 cut(s) 405, 408
Sau3AI GATC 4 cut(s) 73, 138, 369, 831
SchI GAGTC 2 cut(s) 476, 839
ScrFI CCNGG 2 cut(s) 323, 565
SexAI ACCWGGT 1 cut(s) 321
SfaNI GCATC 5 cut(s) 134, 419, 444, 550, 607
SmlI CTYRAG 1 cut(s) 591
SmoI CTYRAG 1 cut(s) 591
SphI GCATGC 1 cut(s) 572
Sse9I AATT 6 cut(s) 251, 386, 390, 454, 768, 797
SsiI CCGC 2 cut(s) 727, 734
SspMI CTAG 3 cut(s) 432, 464, 633
StyD4I CCNGG 2 cut(s) 321, 563
StyI CCWWGG 1 cut(s) 129
TaaI ACNGT 3 cut(s) 37, 544, 550
TaiI ACGT 5 cut(s) 43, 57, 210, 509, 764
TaqI TCGA 1 cut(s) 66
TasI AATT 6 cut(s) 251, 386, 390, 454, 768, 797
Tru1I TTAA 1 cut(s) 389
Tru9I TTAA 1 cut(s) 389
TscAI CASTG 4 cut(s) 265, 420, 555, 592
TseFI GTSAC 1 cut(s) 509
TseI GCWGC 2 cut(s) 404, 407
Tsp45I GTSAC 1 cut(s) 509
TspDTI ATGAA 7 cut(s) 17, 159, 264, 726, 780, 799, 814
TspGWI ACGGA 2 cut(s) 165, 570
TspRI CASTG 4 cut(s) 265, 420, 555, 592
VspI ATTAAT 1 cut(s) 389
XapI RAATTY 2 cut(s) 251, 797
XceI RCATGY 1 cut(s) 572
XcmI CCANNNNNNNNNTGG 1 cut(s) 389
XspI CTAG 3 cut(s) 432, 464, 633
Zsp2I ATGCAT 2 cut(s) 783, 818
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.