Rh1AG084300

FAD binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0002765
Physical Location & Seq
Reverse (-)
14416936 .. 14430852
13917 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG084300.1

Sequence Viewer

Length: 993 bp
ATGATCAAAAGTGCAACACGTGTTCCAGATATCATCCATCTCTTTTTGCTCTCATCACCACCAGCCACGAAAGAAGAAATGCGATGTGTGAGAAGGACTGATCTGGTTAATATTTTGGCTCAAAACCTGCCACTCAACACTGTACGTTATGGCTCCAACGTACTTTCTATTGAGTTGGATCCTGTAACATCTTATCCAGTTCTTCAACTTCAAAATGGAACTAGCTTAAACGCCAAGGTTGTGATCGGATGCGACGGAGTGAACTCCAAGATAACAAATCTGATTGGGGTGAAGGCCCCGAGTAGACTCAACGTAATGGCAGTAAGAAGCATTACAATATATCCAAATGGCCATAAATTCGGCAGTGAGTTTAAGATGATAAAAAAAGGTGATGTTACGGTCGGAGTAATACCCATGACCACCAACCAGGTTTATTGGTTCATCACTGGAAAATACTTTTCACAAGAAGGTTTCAAGATCTCCAAAAGTTCGAAATTGATTATGAACTTCTCAACTGAGTCCGTGAAGGATTTTCCTAGTAGCATTAAAGAGATGGTCAACAATTGTTGGCTAGAGTACTTACATTTCTCAGAGTACATCAAATACCGATCACCATGGAACATACTATGTACACACTTTCGGGTAGGAACAGTGACAGTTGCAGGAGATGCCTTGCATGCAATGACTCCGTTCATTGCTCAGGGTGGCTCAGCCGCTTTGGAAGACGCAGTTGTCCTTGCTAGGTGCTTGGCACGAAAGGCTGTCGTCTATGGTCCAGGTGAAATAGGAAGCAAACTTATGGTAGAGAAAGCATTTGATGAATACCTAAAAGAGCGGAAAACACGACTTCTAAGACTCACTATCGAATCAACCCTACTCGGAAAGATGGAAGAAACTTCATCAAAGCTCATCAAGCTCTTATATATTGTGCTCATGGTGGTCCTATTTCGCAACTCATTTGCTCACGCTCGCTATGACTGTGGCAAACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3

Protein Analysis

330

Amino Acids

36.89

Weight (kDa)

9.47

Isoelectric Point (pI)

36.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 34 - 252 3.7e-14 FAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 731
Acc36I ACCTGC 1 cut(s) 135
AccBSI CCGCTC 1 cut(s) 835
AccI GTMKAC 1 cut(s) 304
AciI CCGC 2 cut(s) 714, 835
AclWI GGATC 2 cut(s) 173, 186
AcoI YGGCCR 1 cut(s) 349
AcsI RAATTY 1 cut(s) 356
AcvI CACGTG 1 cut(s) 20
AfaI GTAC 5 cut(s) 144, 162, 578, 596, 631
AflIII ACRYGT 2 cut(s) 17, 19
AgsI TTSAA 3 cut(s) 206, 212, 475
AjnI CCWGG 2 cut(s) 426, 775
AluBI AGCT 3 cut(s) 225, 907, 916
AluI AGCT 3 cut(s) 225, 907, 916
Alw21I GWGCWC 1 cut(s) 933
AlwI GGATC 2 cut(s) 173, 186
Ama87I CYCGRG 1 cut(s) 298
AoxI GGCC 2 cut(s) 294, 349
ApoI RAATTY 1 cut(s) 356
AspS9I GGNCC 3 cut(s) 295, 773, 940
AsuHPI GGTGA 5 cut(s) 48, 301, 401, 603, 791
AsuII TTCGAA 1 cut(s) 491
AvaI CYCGRG 1 cut(s) 298
AvaII GGWCC 2 cut(s) 773, 940
BalI TGGCCA 1 cut(s) 351
BamHI GGATCC 1 cut(s) 178
BbrPI CACGTG 1 cut(s) 20
BbsI GAAGAC 1 cut(s) 729
Bbv12I GWGCWC 1 cut(s) 933
BccI CCATC 3 cut(s) 45, 547, 880
BciT130I CCWGG 2 cut(s) 428, 777
BclI TGATCA 1 cut(s) 3
BfaI CTAG 4 cut(s) 222, 537, 572, 741
BfuAI ACCTGC 1 cut(s) 135
BglII AGATCT 1 cut(s) 477
BisI GCNGC 1 cut(s) 714
BlpI GCTNAGC 1 cut(s) 709
BlsI GCNGC 1 cut(s) 715
BmcAI AGTACT 1 cut(s) 578
Bme1390I CCNGG 2 cut(s) 428, 777
Bme18I GGWCC 2 cut(s) 773, 940
BmeT110I CYCGRG 1 cut(s) 298
BmgT120I GGNCC 3 cut(s) 295, 773, 940
BmiI GGNNCC 3 cut(s) 154, 180, 297
BmrFI CCNGG 2 cut(s) 428, 777
BmsI GCATC 2 cut(s) 239, 658
BpiI GAAGAC 1 cut(s) 729
Bpu10I CCTNAGC 1 cut(s) 699
Bpu1102I GCTNAGC 1 cut(s) 709
Bpu14I TTCGAA 1 cut(s) 491
BsaAI YACGTR 1 cut(s) 20
BsaJI CCNNGG 2 cut(s) 234, 614
Bse1I ACTGG 2 cut(s) 197, 451
Bse3DI GCAATG 2 cut(s) 687, 693
BseBI CCWGG 2 cut(s) 428, 777
BseDI CCNNGG 2 cut(s) 234, 614
BseGI GGATG 2 cut(s) 33, 254
BseMI GCAATG 2 cut(s) 687, 693
BseMII CTCAG 4 cut(s) 507, 603, 713, 723
BseNI ACTGG 2 cut(s) 197, 451
Bsh1285I CGRYCG 1 cut(s) 402
BshFI GGCC 2 cut(s) 296, 351
BsiEI CGRYCG 1 cut(s) 402
BsiHKAI GWGCWC 1 cut(s) 933
BsiHKCI CYCGRG 1 cut(s) 298
BsnI GGCC 2 cut(s) 296, 351
BsoBI CYCGRG 1 cut(s) 298
Bsp119I TTCGAA 1 cut(s) 491
Bsp1286I GDGCHC 1 cut(s) 933
Bsp1407I TGTACA 1 cut(s) 629
Bsp143I GATC 6 cut(s) 3, 100, 178, 243, 477, 608
Bsp1720I GCTNAGC 1 cut(s) 709
Bsp19I CCATGG 1 cut(s) 614
BspACI CCGC 2 cut(s) 714, 835
BspANI GGCC 2 cut(s) 296, 351
BspCNI CTCAG 4 cut(s) 508, 602, 712, 722
BspLI GGNNCC 3 cut(s) 154, 180, 297
BspMI ACCTGC 1 cut(s) 135
BspPI GGATC 2 cut(s) 173, 186
BspT104I TTCGAA 1 cut(s) 491
BsrBI CCGCTC 1 cut(s) 835
BsrDI GCAATG 2 cut(s) 687, 693
BsrGI TGTACA 1 cut(s) 629
BsrI ACTGG 2 cut(s) 197, 451
BssECI CCNNGG 2 cut(s) 234, 614
BssMI GATC 6 cut(s) 3, 100, 178, 243, 477, 608
BssT1I CCWWGG 2 cut(s) 234, 614
Bst2UI CCWGG 2 cut(s) 428, 777
Bst4CI ACNGT 5 cut(s) 142, 400, 652, 658, 980
BstAPI GCANNNNNTGC 1 cut(s) 668
BstAUI TGTACA 1 cut(s) 629
BstBAI YACGTR 1 cut(s) 20
BstBI TTCGAA 1 cut(s) 491
BstC8I GCNNGC 2 cut(s) 678, 970
BstDEI CTNAG 5 cut(s) 516, 589, 699, 709, 851
BstDSI CCRYGG 1 cut(s) 614
BstF5I GGATG 2 cut(s) 33, 254
BstKTI GATC 6 cut(s) 6, 103, 181, 246, 480, 611
BstMBI GATC 6 cut(s) 3, 100, 178, 243, 477, 608
BstMCI CGRYCG 1 cut(s) 402
BstMWI GCNNNNNNNGC 4 cut(s) 668, 677, 758, 913
BstNI CCWGG 2 cut(s) 428, 777
BstNSI RCATGY 1 cut(s) 680
BstSCI CCNGG 2 cut(s) 426, 775
BstV2I GAAGAC 1 cut(s) 729
BstX2I RGATCY 2 cut(s) 178, 477
BstYI RGATCY 2 cut(s) 178, 477
BsuRI GGCC 2 cut(s) 296, 351
BtgI CCRYGG 1 cut(s) 614
BtgZI GCGATG 1 cut(s) 97
BtsCI GGATG 2 cut(s) 33, 254
BtsI GCAGTG 1 cut(s) 370
BtsIMutI CAGTG 4 cut(s) 138, 370, 444, 657
BveI ACCTGC 1 cut(s) 135
Cac8I GCNNGC 2 cut(s) 678, 970
Cfr13I GGNCC 3 cut(s) 295, 773, 940
CseI GACGC 1 cut(s) 734
CsiI ACCWGGT 1 cut(s) 426
Csp6I GTAC 5 cut(s) 143, 161, 577, 595, 630
CviAII CATG 4 cut(s) 415, 615, 677, 934
CviQI GTAC 5 cut(s) 143, 161, 577, 595, 630
DdeI CTNAG 5 cut(s) 516, 589, 699, 709, 851
DpnI GATC 6 cut(s) 5, 102, 180, 245, 479, 610
DpnII GATC 6 cut(s) 3, 100, 178, 243, 477, 608
DrdI GACNNNNNNGTC 1 cut(s) 731
DseDI GACNNNNNNGTC 1 cut(s) 731
EaeI YGGCCR 1 cut(s) 349
Eco130I CCWWGG 2 cut(s) 234, 614
Eco32I GATATC 1 cut(s) 31
Eco47I GGWCC 2 cut(s) 773, 940
Eco72I CACGTG 1 cut(s) 20
Eco88I CYCGRG 1 cut(s) 298
EcoO109I RGGNCCY 1 cut(s) 295
EcoRII CCWGG 2 cut(s) 426, 775
EcoRV GATATC 1 cut(s) 31
EcoT14I CCWWGG 2 cut(s) 234, 614
ErhI CCWWGG 2 cut(s) 234, 614
FaeI CATG 4 cut(s) 418, 618, 680, 937
FatI CATG 4 cut(s) 414, 614, 676, 933
FbaI TGATCA 1 cut(s) 3
FblI GTMKAC 1 cut(s) 304
Fnu4HI GCNGC 1 cut(s) 714
FokI GGATG 2 cut(s) 20, 261
Fsp4HI GCNGC 1 cut(s) 714
FspBI CTAG 4 cut(s) 222, 537, 572, 741
GluI GCNGC 1 cut(s) 714
HaeIII GGCC 2 cut(s) 296, 351
HgaI GACGC 1 cut(s) 734
Hin1II CATG 4 cut(s) 418, 618, 680, 937
HincII GTYRAC 1 cut(s) 559
HindII GTYRAC 1 cut(s) 559
HinfI GANTC 5 cut(s) 306, 518, 685, 855, 866
HphI GGTGA 5 cut(s) 48, 301, 401, 603, 791
Hpy166II GTNNAC 4 cut(s) 262, 305, 559, 632
Hpy188I TCNGA 5 cut(s) 248, 282, 404, 592, 881
Hpy188III TCNNGA 2 cut(s) 26, 475
Hpy8I GTNNAC 4 cut(s) 262, 305, 559, 632
Hpy99I CGWCG 1 cut(s) 257
HpyAV CCTTC 4 cut(s) 87, 286, 461, 520
HpyCH4III ACNGT 5 cut(s) 142, 400, 652, 658, 980
HpyCH4IV ACGT 4 cut(s) 19, 145, 159, 312
HpyCH4V TGCA 4 cut(s) 14, 662, 676, 680
HpyF10VI GCNNNNNNNGC 4 cut(s) 668, 677, 758, 913
HpyF3I CTNAG 5 cut(s) 516, 589, 699, 709, 851
HpySE526I ACGT 4 cut(s) 19, 145, 159, 312
Hsp92II CATG 4 cut(s) 418, 618, 680, 937
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 6 cut(s) 3, 100, 178, 243, 477, 608
LmnI GCTCC 1 cut(s) 158
LweI GCATC 2 cut(s) 239, 658
MabI ACCWGGT 1 cut(s) 426
MaeI CTAG 4 cut(s) 222, 537, 572, 741
MaeII ACGT 4 cut(s) 19, 145, 159, 312
MaeIII GTNAC 3 cut(s) 184, 394, 652
MalI GATC 6 cut(s) 5, 102, 180, 245, 479, 610
MbiI CCGCTC 1 cut(s) 835
MboI GATC 6 cut(s) 3, 100, 178, 243, 477, 608
MboII GAAGA 4 cut(s) 86, 194, 734, 902
MfeI CAATTG 1 cut(s) 562
MflI RGATCY 2 cut(s) 178, 477
MhlI GDGCHC 1 cut(s) 933
MlsI TGGCCA 1 cut(s) 351
MluCI AATT 3 cut(s) 356, 494, 562
MluNI TGGCCA 1 cut(s) 351
MlyI GAGTC 4 cut(s) 300, 527, 679, 849
MmeI TCCRAC 3 cut(s) 156, 180, 382
Mox20I TGGCCA 1 cut(s) 351
MscI TGGCCA 1 cut(s) 351
MseI TTAA 4 cut(s) 108, 227, 372, 546
Msp20I TGGCCA 1 cut(s) 351
MspR9I CCNGG 2 cut(s) 428, 777
MunI CAATTG 1 cut(s) 562
MvaI CCWGG 2 cut(s) 428, 777
MwoI GCNNNNNNNGC 4 cut(s) 668, 677, 758, 913
NcoI CCATGG 1 cut(s) 614
NdeII GATC 6 cut(s) 3, 100, 178, 243, 477, 608
NlaIII CATG 4 cut(s) 418, 618, 680, 937
NlaIV GGNNCC 3 cut(s) 154, 180, 297
NmuCI GTSAC 1 cut(s) 652
NspI RCATGY 1 cut(s) 680
NspV TTCGAA 1 cut(s) 491
PaeI GCATGC 1 cut(s) 680
PfeI GAWTC 1 cut(s) 866
PkrI GCNGC 1 cut(s) 715
PleI GAGTC 4 cut(s) 300, 526, 679, 849
PmaCI CACGTG 1 cut(s) 20
PmlI CACGTG 1 cut(s) 20
PpsI GAGTC 4 cut(s) 300, 526, 679, 849
Ppu21I YACGTR 1 cut(s) 20
Psp6I CCWGG 2 cut(s) 426, 775
PspCI CACGTG 1 cut(s) 20
PspGI CCWGG 2 cut(s) 426, 775
PspN4I GGNNCC 3 cut(s) 154, 180, 297
PspPI GGNCC 3 cut(s) 295, 773, 940
PsuI RGATCY 2 cut(s) 178, 477
RsaI GTAC 5 cut(s) 144, 162, 578, 596, 631
RsaNI GTAC 5 cut(s) 143, 161, 577, 595, 630
SaqAI TTAA 4 cut(s) 108, 227, 372, 546
SatI GCNGC 1 cut(s) 714
Sau3AI GATC 6 cut(s) 3, 100, 178, 243, 477, 608
Sau96I GGNCC 3 cut(s) 295, 773, 940
ScaI AGTACT 1 cut(s) 578
SchI GAGTC 4 cut(s) 300, 527, 679, 849
ScrFI CCNGG 2 cut(s) 428, 777
SduI GDGCHC 1 cut(s) 933
SexAI ACCWGGT 1 cut(s) 426
SfaNI GCATC 2 cut(s) 239, 658
SfuI TTCGAA 1 cut(s) 491
SinI GGWCC 2 cut(s) 773, 940
SphI GCATGC 1 cut(s) 680
Sse9I AATT 3 cut(s) 356, 494, 562
SsiI CCGC 2 cut(s) 714, 835
SspI AATATT 1 cut(s) 112
SspMI CTAG 4 cut(s) 222, 537, 572, 741
StyD4I CCNGG 2 cut(s) 426, 775
StyI CCWWGG 2 cut(s) 234, 614
TaaI ACNGT 5 cut(s) 142, 400, 652, 658, 980
TaiI ACGT 4 cut(s) 22, 148, 162, 315
TaqI TCGA 2 cut(s) 491, 864
TasI AATT 3 cut(s) 356, 494, 562
TatI WGTACW 3 cut(s) 576, 594, 629
TauI GCSGC 1 cut(s) 716
TfiI GAWTC 1 cut(s) 866
Tru1I TTAA 4 cut(s) 108, 227, 372, 546
Tru9I TTAA 4 cut(s) 108, 227, 372, 546
TscAI CASTG 4 cut(s) 145, 370, 451, 657
TseFI GTSAC 1 cut(s) 652
Tsp45I GTSAC 1 cut(s) 652
TspDTI ATGAA 5 cut(s) 430, 518, 682, 834, 888
TspGWI ACGGA 3 cut(s) 270, 511, 678
TspRI CASTG 4 cut(s) 145, 370, 451, 657
VpaK11BI GGWCC 2 cut(s) 773, 940
XapI RAATTY 1 cut(s) 356
XceI RCATGY 1 cut(s) 680
XmiI GTMKAC 1 cut(s) 304
XspI CTAG 4 cut(s) 222, 537, 572, 741
ZrmI AGTACT 1 cut(s) 578
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.