Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002765

Physical Location & Seq

Genomic Coordinates Reverse (-)

2604124 .. 2606015

Gene Structure 1892 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG033500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGGCAGAAGATACAAGAGAAAATATTGTGATTGTGGGTGGTGGGATTTGTGGCCTTGCTACTGCTCTTGCTCTTCACAGGAAGGGCATAAGAAGCTTGGTCCTAGAAAGATCAGAGAGTTTGCGAGCAACGGGAGTAGCTATCATTATTCATTCTAATGGATGGCGTGCACTTGATCAACTTGGTGTTGCCTCCTATCTTAGACAAACTGCTAATCCTATACTATCGGGAAAATTTAAGTCACTTAATGATAACAAGCTACAAAAATTACCAGTTGGGAAAGAAGAATTACGATGTGTGAAAAGGACTGATCTGATGAATATCATGGCTGATAATCTGCCACAAAACACCGTACGTTTTGGGTGCAACGTACTTTCTATCGAGTTGGATCCCATAACTTCTTCTCCAGTTCTTCAACTTCAAGATGGAACCAGTTTGAATGCCAAGGTTGTGATCGGATGCGATGGAGTGAACTCTACGATTTCATATATGATGGGGGCGACGGCTACAAATATATTCAACGTATGTGGGATAAGAGGTTTCACTAGTTATCCAAGTGGTCATGAATTCGGCAGTGAGCTCAAACTCACCAAAAAAGATGATGTTCAAGTCGGACTATTGCCCATGACCACCAACCTGGTTTATTGGTTCCTTACTCGCAAATATATATCGTGCAAGTCCAAGATCTCCCACAGCCAGAAATTAATTGGGGATATGGCAACTGCATCAGTGAAGGACTTTCCTTCTAGCATCAAAGAGATGGTAGAGAATTGCTCACTAGAGTCTCTACATCTTTCAGACTACATGAGATACCGACCACCGTGTGACGTACTACGAAGACGATTTCGGGTGGGAACAGTAACAGTGGCAGGAGATGCCTGGCATGCAATGGCTCCGTTCATTGGTCAAGGTGGCTCAGCCTCTTTGGAAGATGCAGTTGTGCTGGCTAGGTGCTTGGCGCGAAGGACTATTGTTGGTATTCCAAGTGGAAGAATGAGCAAGACGATGGTAGAAGAAGCACTTGATGAATACCTAAAAGAGCGGAAACCTCGAGTTCTAAGACTATCTTTGCAGACGTACCTAATTGGGAAAATGCATGATACTTCATCAAAATTTATCAAGTTCATATGCATTGTGTTCATGGCGATCATATTCTACGACTCGCATGGACATACTAGTTATGATTGTGGTACCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_3

Protein Analysis

399

Amino Acids

44.01

Weight (kDa)

9.1

Isoelectric Point (pI)

44.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_3	PF01494	9 - 352	2.9e-29	FAD binding domain
DAO	PF01266	9 - 47	2.6e-06	FAD dependent oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002765)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15760 AT4G15760
fragaria_vesca	FvH4_7g03910
malus_domestica	MD07G1043700.v1.1 MD10G1041900.v1.1 MD10G1042000.v1.1
prunus_persica	Prupe.2G043900_v2.0.a1 Prupe.8G046000_v2.0.a1 Prupe.8G046000_v2.0.a1 Prupe.8G046000_v2.0.a1 Prupe.8G046000_v2.0.a1 Prupe.8G046000_v2.0.a1
pyrus_communis	pycom10g02900 pycom10g02910
rosa_chinensis	RchiOBHm_Chr1g0327481 RchiOBHm_Chr1g0327491 RchiOBHm_Chr2g0087851
rosa_laevigata	RLG00000015907 RLG00000029990
rosa_multiflora	Rmu_sc0003600.1_g000007 Rmu_sc0008385.1_g000017 Rmu_ssc0000042.1_g000053
rosa_roxburghii	Rroxscaffold_2G00151770 Rroxscaffold_2G00153170 Rroxscaffold_4G00322630
rosa_rugosa	Rorug01G0067300 Rorug01G0479000
rosa_samantha	Rh1AG084300 Rh1BG067000 Rh1CG082000 Rh1CG082100 Rh1DG088600 Rh1DG088700 Rh2AG033600 Rh2BG032800 Rh2CG033500 Rh2DG033200
rosa_wichuraiana	Rw1G006630 Rw2G002620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1190
AccB1I	GGYRCC	1 cut(s)	1190
AccBSI	CCGCTC	1 cut(s)	1042
AccII	CGCG	1 cut(s)	961
AciI	CCGC	1 cut(s)	1042
AclWI	GGATC	2 cut(s)	383, 396
AcsI	RAATTY	3 cut(s)	233, 566, 1112
AdeI	CACNNNGTG	1 cut(s)	824
AfaI	GTAC	5 cut(s)	354, 372, 831, 1079, 1192
AfiI	CCNNNNNNNGG	1 cut(s)	902
AgsI	TTSAA	5 cut(s)	416, 422, 439, 520, 608
AhlI	ACTAGT	2 cut(s)	545, 1175
AjnI	CCWGG	2 cut(s)	636, 878
AluBI	AGCT	4 cut(s)	96, 140, 259, 580
AluI	AGCT	4 cut(s)	96, 140, 259, 580
Alw21I	GWGCWC	2 cut(s)	172, 582
Alw26I	GTCTC	1 cut(s)	789
Alw44I	GTGCAC	1 cut(s)	168
AlwI	GGATC	2 cut(s)	383, 396
Ama87I	CYCGRG	1 cut(s)	1050
AoxI	GGCC	1 cut(s)	52
ApaLI	GTGCAC	1 cut(s)	168
ApoI	RAATTY	3 cut(s)	233, 566, 1112
AseI	ATTAAT	1 cut(s)	704
Asp718I	GGTACC	1 cut(s)	1190
AspLEI	GCGC	1 cut(s)	961
AspS9I	GGNCC	1 cut(s)	100
AsuHPI	GGTGA	1 cut(s)	580
AvaI	CYCGRG	1 cut(s)	1050
AvaII	GGWCC	1 cut(s)	100
BaeGI	GKGCMC	1 cut(s)	172
BamHI	GGATCC	1 cut(s)	388
BanI	GGYRCC	1 cut(s)	1190
BanII	GRGCYC	1 cut(s)	582
BbsI	GAAGAC	1 cut(s)	844
Bbv12I	GWGCWC	2 cut(s)	172, 582
BccI	CCATC	6 cut(s)	156, 419, 458, 487, 754, 1000
BceAI	ACGGC	1 cut(s)	519
BciT130I	CCWGG	2 cut(s)	638, 880
BclI	TGATCA	1 cut(s)	175
BcoDI	GTCTC	1 cut(s)	789
BcuI	ACTAGT	2 cut(s)	545, 1175
BfaI	CTAG	6 cut(s)	104, 546, 747, 779, 948, 1176
BglII	AGATCT	1 cut(s)	684
BlpI	GCTNAGC	1 cut(s)	916
Bme1390I	CCNGG	2 cut(s)	638, 880
Bme18I	GGWCC	1 cut(s)	100
BmeT110I	CYCGRG	1 cut(s)	1050
BmgT120I	GGNCC	1 cut(s)	100
BmiI	GGNNCC	5 cut(s)	390, 430, 650, 894, 1192
BmrFI	CCNGG	2 cut(s)	638, 880
BmsI	GCATC	5 cut(s)	449, 734, 759, 865, 922
BpiI	GAAGAC	1 cut(s)	844
BplI	GAGNNNNNCTC	2 cut(s)	758, 790
BpmI	CTGGAG	1 cut(s)	390
Bpu1102I	GCTNAGC	1 cut(s)	916
BsaBI	GATNNNNATC	1 cut(s)	320
BsaJI	CCNNGG	1 cut(s)	444
BsaXI	ACNNNNNCTCC	2 cut(s)	388, 418
Bsc4I	CCNNNNNNNGG	1 cut(s)	902
Bse1I	ACTGG	3 cut(s)	272, 407, 432
Bse3DI	GCAATG	1 cut(s)	894
Bse8I	GATNNNNATC	1 cut(s)	320
BseBI	CCWGG	2 cut(s)	638, 880
BseDI	CCNNGG	1 cut(s)	444
BseGI	GGATG	2 cut(s)	167, 464
BseJI	GATNNNNATC	1 cut(s)	320
BseLI	CCNNNNNNNGG	1 cut(s)	902
BseMI	GCAATG	1 cut(s)	894
BseMII	CTCAG	1 cut(s)	930
BseNI	ACTGG	3 cut(s)	272, 407, 432
BseSI	GKGCMC	1 cut(s)	172
Bsh1236I	CGCG	1 cut(s)	961
BshFI	GGCC	1 cut(s)	54
BshNI	GGYRCC	1 cut(s)	1190
BsiHKAI	GWGCWC	2 cut(s)	172, 582
BsiHKCI	CYCGRG	1 cut(s)	1050
BsiWI	CGTACG	1 cut(s)	352
BslI	CCNNNNNNNGG	1 cut(s)	902
BsmAI	GTCTC	1 cut(s)	789
BsmI	GAATGC	1 cut(s)	445
BsnI	GGCC	1 cut(s)	54
BsoBI	CYCGRG	1 cut(s)	1050
Bsp1286I	GDGCHC	2 cut(s)	172, 582
Bsp143I	GATC	7 cut(s)	110, 175, 310, 388, 453, 684, 1146
Bsp1720I	GCTNAGC	1 cut(s)	916
BspACI	CCGC	1 cut(s)	1042
BspANI	GGCC	1 cut(s)	54
BspCNI	CTCAG	1 cut(s)	929
BspFNI	CGCG	1 cut(s)	961
BspHI	TCATGA	1 cut(s)	562
BspLI	GGNNCC	5 cut(s)	390, 430, 650, 894, 1192
BspPI	GGATC	2 cut(s)	383, 396
BspQI	GCTCTTC	1 cut(s)	78
BspT107I	GGYRCC	1 cut(s)	1190
BsrBI	CCGCTC	1 cut(s)	1042
BsrDI	GCAATG	1 cut(s)	894
BsrI	ACTGG	3 cut(s)	272, 407, 432
BssECI	CCNNGG	1 cut(s)	444
BssMI	GATC	7 cut(s)	110, 175, 310, 388, 453, 684, 1146
BssT1I	CCWWGG	1 cut(s)	444
Bst2UI	CCWGG	2 cut(s)	638, 880
Bst4CI	ACNGT	4 cut(s)	352, 822, 859, 865
Bst6I	CTCTTC	1 cut(s)	78
BstAPI	GCANNNNNTGC	1 cut(s)	875
BstC8I	GCNNGC	4 cut(s)	126, 168, 885, 945
BstDEI	CTNAG	3 cut(s)	200, 916, 1058
BstF5I	GGATG	2 cut(s)	167, 464
BstFNI	CGCG	1 cut(s)	961
BstHHI	GCGC	1 cut(s)	961
BstKTI	GATC	7 cut(s)	113, 178, 313, 391, 456, 687, 1149
BstMAI	GTCTC	1 cut(s)	789
BstMBI	GATC	7 cut(s)	110, 175, 310, 388, 453, 684, 1146
BstMWI	GCNNNNNNNGC	3 cut(s)	93, 875, 884
BstNI	CCWGG	2 cut(s)	638, 880
BstNSI	RCATGY	1 cut(s)	887
BstSCI	CCNGG	2 cut(s)	636, 878
BstSLI	GKGCMC	1 cut(s)	172
BstUI	CGCG	1 cut(s)	961
BstV2I	GAAGAC	1 cut(s)	844
BstX2I	RGATCY	2 cut(s)	388, 684
BstXI	CCANNNNNNTGG	1 cut(s)	637
BstYI	RGATCY	2 cut(s)	388, 684
BsuRI	GGCC	1 cut(s)	54
BtgZI	GCGATG	1 cut(s)	477
BtsCI	GGATG	2 cut(s)	167, 464
BtsI	GCAGTG	1 cut(s)	580
BtsIMutI	CAGTG	3 cut(s)	580, 735, 870
Cac8I	GCNNGC	4 cut(s)	126, 168, 885, 945
CciI	TCATGA	1 cut(s)	562
CfoI	GCGC	1 cut(s)	961
Cfr13I	GGNCC	1 cut(s)	100
CsiI	ACCWGGT	1 cut(s)	636
Csp6I	GTAC	5 cut(s)	353, 371, 830, 1078, 1191
CspCI	CAANNNNNGTGG	2 cut(s)	508, 543
CviAII	CATG	8 cut(s)	325, 563, 625, 805, 884, 1097, 1141, 1166
CviQI	GTAC	5 cut(s)	353, 371, 830, 1078, 1191
DdeI	CTNAG	3 cut(s)	200, 916, 1058
DpnI	GATC	7 cut(s)	112, 177, 312, 390, 455, 686, 1148
DpnII	GATC	7 cut(s)	110, 175, 310, 388, 453, 684, 1146
DraIII	CACNNNGTG	1 cut(s)	824
Eam1104I	CTCTTC	1 cut(s)	78
EarI	CTCTTC	1 cut(s)	78
Ecl136II	GAGCTC	1 cut(s)	580
Eco130I	CCWWGG	1 cut(s)	444
Eco24I	GRGCYC	1 cut(s)	582
Eco47I	GGWCC	1 cut(s)	100
Eco53kI	GAGCTC	1 cut(s)	580
Eco88I	CYCGRG	1 cut(s)	1050
EcoICRI	GAGCTC	1 cut(s)	580
EcoRI	GAATTC	1 cut(s)	566
EcoRII	CCWGG	2 cut(s)	636, 878
EcoT14I	CCWWGG	1 cut(s)	444
EcoT22I	ATGCAT	2 cut(s)	1098, 1133
EcoT38I	GRGCYC	1 cut(s)	582
ErhI	CCWWGG	1 cut(s)	444
FaeI	CATG	8 cut(s)	328, 566, 628, 808, 887, 1100, 1144, 1169
FalI	AAGNNNNNCTT	4 cut(s)	1005, 1037, 1051, 1083
FatI	CATG	8 cut(s)	324, 562, 624, 804, 883, 1096, 1140, 1165
FauNDI	CATATG	1 cut(s)	1127
FbaI	TGATCA	1 cut(s)	175
FokI	GGATG	2 cut(s)	174, 471
FriOI	GRGCYC	1 cut(s)	582
FspBI	CTAG	6 cut(s)	104, 546, 747, 779, 948, 1176
GlaI	GCGC	1 cut(s)	960
GsuI	CTGGAG	1 cut(s)	390
HaeIII	GGCC	1 cut(s)	54
HhaI	GCGC	1 cut(s)	961
Hin1II	CATG	8 cut(s)	328, 566, 628, 808, 887, 1100, 1144, 1169
Hin6I	GCGC	1 cut(s)	959
HinP1I	GCGC	1 cut(s)	959
HindIII	AAGCTT	1 cut(s)	94
HinfI	GANTC	2 cut(s)	782, 1160
HphI	GGTGA	1 cut(s)	580
Hpy166II	GTNNAC	2 cut(s)	170, 472
Hpy188I	TCNGA	6 cut(s)	115, 315, 458, 614, 799, 1199
Hpy188III	TCNNGA	3 cut(s)	228, 422, 563
Hpy8I	GTNNAC	2 cut(s)	170, 472
Hpy99I	CGWCG	1 cut(s)	505
HpyAV	CCTTC	4 cut(s)	76, 727, 753, 957
HpyCH4III	ACNGT	4 cut(s)	352, 822, 859, 865
HpyCH4IV	ACGT	5 cut(s)	355, 369, 522, 828, 1076
HpyCH4V	TGCA	9 cut(s)	170, 366, 675, 725, 887, 935, 1072, 1096, 1131
HpyF10VI	GCNNNNNNNGC	3 cut(s)	93, 875, 884
HpyF3I	CTNAG	3 cut(s)	200, 916, 1058
HpySE526I	ACGT	5 cut(s)	355, 369, 522, 828, 1076
Hsp92II	CATG	8 cut(s)	328, 566, 628, 808, 887, 1100, 1144, 1169
HspAI	GCGC	1 cut(s)	959
KpnI	GGTACC	1 cut(s)	1194
Ksp22I	TGATCA	1 cut(s)	175
Kzo9I	GATC	7 cut(s)	110, 175, 310, 388, 453, 684, 1146
LguI	GCTCTTC	1 cut(s)	78
LmnI	GCTCC	1 cut(s)	898
LweI	GCATC	5 cut(s)	449, 734, 759, 865, 922
MabI	ACCWGGT	1 cut(s)	636
MaeI	CTAG	6 cut(s)	104, 546, 747, 779, 948, 1176
MaeII	ACGT	5 cut(s)	355, 369, 522, 828, 1076
MaeIII	GTNAC	3 cut(s)	240, 824, 859
MalI	GATC	7 cut(s)	112, 177, 312, 390, 455, 686, 1148
MbiI	CCGCTC	1 cut(s)	1042
MboI	GATC	7 cut(s)	110, 175, 310, 388, 453, 684, 1146
MboII	GAAGA	9 cut(s)	20, 65, 296, 393, 404, 849, 941, 1002, 1025
MflI	RGATCY	2 cut(s)	388, 684
MhlI	GDGCHC	2 cut(s)	172, 582
MluCI	AATT	9 cut(s)	233, 266, 287, 566, 701, 705, 769, 1083, 1112
MlyI	GAGTC	2 cut(s)	791, 1154
MmeI	TCCRAC	2 cut(s)	366, 592
MnlI	CCTC	4 cut(s)	202, 530, 931, 1059
Mph1103I	ATGCAT	2 cut(s)	1098, 1133
MseI	TTAA	3 cut(s)	237, 246, 704
MslI	CAYNNNNRTG	1 cut(s)	156
MspR9I	CCNGG	2 cut(s)	638, 880
Mva1269I	GAATGC	1 cut(s)	445
MvaI	CCWGG	2 cut(s)	638, 880
MvnI	CGCG	1 cut(s)	961
MwoI	GCNNNNNNNGC	3 cut(s)	93, 875, 884
NdeI	CATATG	1 cut(s)	1127
NdeII	GATC	7 cut(s)	110, 175, 310, 388, 453, 684, 1146
NlaIII	CATG	8 cut(s)	328, 566, 628, 808, 887, 1100, 1144, 1169
NlaIV	GGNNCC	5 cut(s)	390, 430, 650, 894, 1192
NmuCI	GTSAC	2 cut(s)	240, 824
NsiI	ATGCAT	2 cut(s)	1098, 1133
NspI	RCATGY	1 cut(s)	887
PaeI	GCATGC	1 cut(s)	887
PaeR7I	CTCGAG	1 cut(s)	1050
PagI	TCATGA	1 cut(s)	562
PciSI	GCTCTTC	1 cut(s)	78
PctI	GAATGC	1 cut(s)	445
Pfl23II	CGTACG	1 cut(s)	352
PleI	GAGTC	2 cut(s)	790, 1154
PpsI	GAGTC	2 cut(s)	790, 1154
PshBI	ATTAAT	1 cut(s)	704
Psp124BI	GAGCTC	1 cut(s)	582
Psp6I	CCWGG	2 cut(s)	636, 878
PspGI	CCWGG	2 cut(s)	636, 878
PspLI	CGTACG	1 cut(s)	352
PspN4I	GGNNCC	5 cut(s)	390, 430, 650, 894, 1192
PspPI	GGNCC	1 cut(s)	100
PspXI	VCTCGAGB	1 cut(s)	1050
PsuI	RGATCY	2 cut(s)	388, 684
RsaI	GTAC	5 cut(s)	354, 372, 831, 1079, 1192
RsaNI	GTAC	5 cut(s)	353, 371, 830, 1078, 1191
RseI	CAYNNNNRTG	1 cut(s)	156
SacI	GAGCTC	1 cut(s)	582
SapI	GCTCTTC	1 cut(s)	78
SaqAI	TTAA	3 cut(s)	237, 246, 704
Sau3AI	GATC	7 cut(s)	110, 175, 310, 388, 453, 684, 1146
Sau96I	GGNCC	1 cut(s)	100
SchI	GAGTC	2 cut(s)	791, 1154
ScrFI	CCNGG	2 cut(s)	638, 880
SduI	GDGCHC	2 cut(s)	172, 582
SexAI	ACCWGGT	1 cut(s)	636
SfaNI	GCATC	5 cut(s)	449, 734, 759, 865, 922
Sfr274I	CTCGAG	1 cut(s)	1050
SinI	GGWCC	1 cut(s)	100
SlaI	CTCGAG	1 cut(s)	1050
SmiMI	CAYNNNNRTG	1 cut(s)	156
SmlI	CTYRAG	1 cut(s)	1050
SmoI	CTYRAG	1 cut(s)	1050
SpeI	ACTAGT	2 cut(s)	545, 1175
SphI	GCATGC	1 cut(s)	887
Sse9I	AATT	9 cut(s)	233, 266, 287, 566, 701, 705, 769, 1083, 1112
SsiI	CCGC	1 cut(s)	1042
SspI	AATATT	1 cut(s)	25
SspMI	CTAG	6 cut(s)	104, 546, 747, 779, 948, 1176
SstI	GAGCTC	1 cut(s)	582
StyD4I	CCNGG	2 cut(s)	636, 878
StyI	CCWWGG	1 cut(s)	444
TaaI	ACNGT	4 cut(s)	352, 822, 859, 865
TaiI	ACGT	5 cut(s)	358, 372, 525, 831, 1079
TaqI	TCGA	2 cut(s)	381, 1051
TasI	AATT	9 cut(s)	233, 266, 287, 566, 701, 705, 769, 1083, 1112
Tru1I	TTAA	3 cut(s)	237, 246, 704
Tru9I	TTAA	3 cut(s)	237, 246, 704
TscAI	CASTG	3 cut(s)	580, 735, 870
TseFI	GTSAC	2 cut(s)	240, 824
Tsp45I	GTSAC	2 cut(s)	240, 824
TspDTI	ATGAA	9 cut(s)	140, 332, 474, 579, 889, 1041, 1095, 1114, 1129
TspGWI	ACGGA	1 cut(s)	885
TspRI	CASTG	3 cut(s)	580, 735, 870
VneI	GTGCAC	1 cut(s)	168
VpaK11BI	GGWCC	1 cut(s)	100
VspI	ATTAAT	1 cut(s)	704
XapI	RAATTY	3 cut(s)	233, 566, 1112
XceI	RCATGY	1 cut(s)	887
XcmI	CCANNNNNNNNNTGG	1 cut(s)	704
XhoI	CTCGAG	1 cut(s)	1050
XspI	CTAG	6 cut(s)	104, 546, 747, 779, 948, 1176
Zsp2I	ATGCAT	2 cut(s)	1098, 1133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.