Rh1BG067000

FAD binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0002765
Physical Location & Seq
Forward (+)
10208637 .. 10209892
1256 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG067000.1

Sequence Viewer

Length: 936 bp
ATGCCCATTTCGAAAGAAGAAATGCGATGTGTGAGAAGGACTGATCTGGTTAATATTTTGGCTCAAAACCTGCCACTCAACACTGTACGTTATGGCTCCAACGTACTTTCTATTGAGTTGGATCCTGTAACATCTTATCCAGTTCTTCAACTTCAAAATGGAACTAGTTTAAACGCCAAGGTTGTGATCGGATGCGACGGAGTGAACTCCAAGATAACAAATCTAATTGGGGTGAAGGCCCCAAATAGACTCAACGTAATGGCAATAAGAAGCATTACAATATATCCAAATGGCCATAAATTCGGCAGTGAGTTTAAGATGATAAAAAAAGGTGATGTTACGGTCGGAGTAATACCCATGACCACCAACCAGGTTTATTGGTTCATCACTGGAAAATATTTTTCACAAGAAGGTTTCAAGATCTCCAAAAGTTCGAAATTGATTATGAACTTCTCAACTGAGTTAGTGAAGGATTTTCCTAGTAGCATTAAAGAGATGGTCAACAATTGCTGGCTAGAGTATTTACATTTCTCAGAGTACATCAAATACCGATCACCATGGAACATACTATGTACACACTTTCGGTTAGGCACAGTGACAGTTGCAGGAGATGCCTTGCATGCAATGACTCCGTTCATTGCTCAGGGTGGCTCAGCCGCTTTGGAAGACGCAGTTGTCCTTGCTAGGTGCTTCGCACGAAAGGCTGTCATCGGTGGTCCAGGTGAAATAGGAAGCAAACTTATGGTAGAGAAAGCATTTGATGAATACCTAAAAGAGCGGAAAACACGACTTCTAAGACTTACTATCGAATCAACCGTACTCGGAAAGATGGAAGAAACTTCATCAAAGCTCATCAAGCTCTTATGTATTGTGCTCATGGTGGTCCTATTTCGCAACTCGTTTGCTCACGCTCGCTATGACTGTGGCAAACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3

Protein Analysis

311

Amino Acids

34.78

Weight (kDa)

9.41

Isoelectric Point (pI)

34.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 15 - 233 1.4e-13 FAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 674
Acc36I ACCTGC 1 cut(s) 78
AccBSI CCGCTC 1 cut(s) 778
AciI CCGC 2 cut(s) 657, 778
AclWI GGATC 2 cut(s) 116, 129
AcoI YGGCCR 1 cut(s) 292
AcsI RAATTY 1 cut(s) 299
AfaI GTAC 5 cut(s) 87, 105, 539, 574, 819
AgsI TTSAA 3 cut(s) 149, 155, 418
AhlI ACTAGT 1 cut(s) 164
AjnI CCWGG 2 cut(s) 369, 718
AluBI AGCT 2 cut(s) 850, 859
AluI AGCT 2 cut(s) 850, 859
Alw21I GWGCWC 1 cut(s) 876
AlwI GGATC 2 cut(s) 116, 129
AoxI GGCC 2 cut(s) 237, 292
ApoI RAATTY 1 cut(s) 299
AspS9I GGNCC 3 cut(s) 238, 716, 883
AsuHPI GGTGA 4 cut(s) 244, 344, 546, 734
AsuII TTCGAA 2 cut(s) 11, 434
AvaII GGWCC 2 cut(s) 716, 883
BalI TGGCCA 1 cut(s) 294
BamHI GGATCC 1 cut(s) 121
BbsI GAAGAC 1 cut(s) 672
Bbv12I GWGCWC 1 cut(s) 876
BccI CCATC 2 cut(s) 490, 823
BciT130I CCWGG 2 cut(s) 371, 720
BcuI ACTAGT 1 cut(s) 164
BfaI CTAG 4 cut(s) 165, 480, 515, 684
BfuAI ACCTGC 1 cut(s) 78
BglII AGATCT 1 cut(s) 420
BisI GCNGC 1 cut(s) 657
BlpI GCTNAGC 1 cut(s) 652
BlsI GCNGC 1 cut(s) 658
Bme1390I CCNGG 2 cut(s) 371, 720
Bme18I GGWCC 2 cut(s) 716, 883
BmgT120I GGNCC 3 cut(s) 238, 716, 883
BmiI GGNNCC 3 cut(s) 97, 123, 240
BmrFI CCNGG 2 cut(s) 371, 720
BmsI GCATC 2 cut(s) 182, 601
BpiI GAAGAC 1 cut(s) 672
Bpu10I CCTNAGC 1 cut(s) 642
Bpu1102I GCTNAGC 1 cut(s) 652
Bpu14I TTCGAA 2 cut(s) 11, 434
BsaJI CCNNGG 2 cut(s) 177, 557
Bse1I ACTGG 2 cut(s) 140, 394
Bse3DI GCAATG 2 cut(s) 630, 636
BseBI CCWGG 2 cut(s) 371, 720
BseDI CCNNGG 2 cut(s) 177, 557
BseGI GGATG 1 cut(s) 197
BseMI GCAATG 2 cut(s) 630, 636
BseMII CTCAG 4 cut(s) 450, 546, 656, 666
BseNI ACTGG 2 cut(s) 140, 394
Bsh1285I CGRYCG 1 cut(s) 345
BshFI GGCC 2 cut(s) 239, 294
BsiEI CGRYCG 1 cut(s) 345
BsiHKAI GWGCWC 1 cut(s) 876
BsnI GGCC 2 cut(s) 239, 294
Bsp119I TTCGAA 2 cut(s) 11, 434
Bsp1286I GDGCHC 1 cut(s) 876
Bsp1407I TGTACA 1 cut(s) 572
Bsp143I GATC 5 cut(s) 43, 121, 186, 420, 551
Bsp1720I GCTNAGC 1 cut(s) 652
Bsp19I CCATGG 1 cut(s) 557
BspACI CCGC 2 cut(s) 657, 778
BspANI GGCC 2 cut(s) 239, 294
BspCNI CTCAG 4 cut(s) 451, 545, 655, 665
BspLI GGNNCC 3 cut(s) 97, 123, 240
BspMI ACCTGC 1 cut(s) 78
BspPI GGATC 2 cut(s) 116, 129
BspT104I TTCGAA 2 cut(s) 11, 434
BsrBI CCGCTC 1 cut(s) 778
BsrDI GCAATG 2 cut(s) 630, 636
BsrGI TGTACA 1 cut(s) 572
BsrI ACTGG 2 cut(s) 140, 394
BssECI CCNNGG 2 cut(s) 177, 557
BssMI GATC 5 cut(s) 43, 121, 186, 420, 551
BssT1I CCWWGG 2 cut(s) 177, 557
Bst2UI CCWGG 2 cut(s) 371, 720
Bst4CI ACNGT 6 cut(s) 85, 343, 595, 601, 817, 923
BstAPI GCANNNNNTGC 1 cut(s) 611
BstAUI TGTACA 1 cut(s) 572
BstBI TTCGAA 2 cut(s) 11, 434
BstC8I GCNNGC 3 cut(s) 512, 621, 913
BstDEI CTNAG 5 cut(s) 459, 532, 642, 652, 794
BstDSI CCRYGG 1 cut(s) 557
BstF5I GGATG 1 cut(s) 197
BstKTI GATC 5 cut(s) 46, 124, 189, 423, 554
BstMBI GATC 5 cut(s) 43, 121, 186, 420, 551
BstMCI CGRYCG 1 cut(s) 345
BstMWI GCNNNNNNNGC 4 cut(s) 611, 620, 701, 856
BstNI CCWGG 2 cut(s) 371, 720
BstNSI RCATGY 1 cut(s) 623
BstSCI CCNGG 2 cut(s) 369, 718
BstV2I GAAGAC 1 cut(s) 672
BstX2I RGATCY 2 cut(s) 121, 420
BstYI RGATCY 2 cut(s) 121, 420
BsuRI GGCC 2 cut(s) 239, 294
BtgI CCRYGG 1 cut(s) 557
BtgZI GCGATG 1 cut(s) 40
BtsCI GGATG 1 cut(s) 197
BtsI GCAGTG 1 cut(s) 313
BtsIMutI CAGTG 4 cut(s) 81, 313, 387, 600
BveI ACCTGC 1 cut(s) 78
Cac8I GCNNGC 3 cut(s) 512, 621, 913
Cfr13I GGNCC 3 cut(s) 238, 716, 883
CseI GACGC 1 cut(s) 677
CsiI ACCWGGT 1 cut(s) 369
Csp6I GTAC 5 cut(s) 86, 104, 538, 573, 818
CviAII CATG 4 cut(s) 358, 558, 620, 877
CviQI GTAC 5 cut(s) 86, 104, 538, 573, 818
DdeI CTNAG 5 cut(s) 459, 532, 642, 652, 794
DpnI GATC 5 cut(s) 45, 123, 188, 422, 553
DpnII GATC 5 cut(s) 43, 121, 186, 420, 551
DraI TTTAAA 1 cut(s) 171
DrdI GACNNNNNNGTC 1 cut(s) 674
DseDI GACNNNNNNGTC 1 cut(s) 674
EaeI YGGCCR 1 cut(s) 292
Eco130I CCWWGG 2 cut(s) 177, 557
Eco47I GGWCC 2 cut(s) 716, 883
EcoO109I RGGNCCY 1 cut(s) 238
EcoRII CCWGG 2 cut(s) 369, 718
EcoT14I CCWWGG 2 cut(s) 177, 557
ErhI CCWWGG 2 cut(s) 177, 557
FaeI CATG 4 cut(s) 361, 561, 623, 880
FatI CATG 4 cut(s) 357, 557, 619, 876
Fnu4HI GCNGC 1 cut(s) 657
FokI GGATG 1 cut(s) 204
Fsp4HI GCNGC 1 cut(s) 657
FspBI CTAG 4 cut(s) 165, 480, 515, 684
GluI GCNGC 1 cut(s) 657
HaeIII GGCC 2 cut(s) 239, 294
HgaI GACGC 1 cut(s) 677
Hin1II CATG 4 cut(s) 361, 561, 623, 880
HincII GTYRAC 1 cut(s) 502
HindII GTYRAC 1 cut(s) 502
HinfI GANTC 3 cut(s) 249, 628, 809
HphI GGTGA 4 cut(s) 244, 344, 546, 734
Hpy166II GTNNAC 3 cut(s) 205, 502, 575
Hpy188I TCNGA 4 cut(s) 191, 347, 535, 824
Hpy188III TCNNGA 1 cut(s) 418
Hpy8I GTNNAC 3 cut(s) 205, 502, 575
Hpy99I CGWCG 1 cut(s) 200
HpyAV CCTTC 4 cut(s) 30, 229, 404, 463
HpyCH4III ACNGT 6 cut(s) 85, 343, 595, 601, 817, 923
HpyCH4IV ACGT 3 cut(s) 88, 102, 255
HpyCH4V TGCA 3 cut(s) 605, 619, 623
HpyF10VI GCNNNNNNNGC 4 cut(s) 611, 620, 701, 856
HpyF3I CTNAG 5 cut(s) 459, 532, 642, 652, 794
HpySE526I ACGT 3 cut(s) 88, 102, 255
Hsp92II CATG 4 cut(s) 361, 561, 623, 880
Kzo9I GATC 5 cut(s) 43, 121, 186, 420, 551
LmnI GCTCC 1 cut(s) 101
LweI GCATC 2 cut(s) 182, 601
MabI ACCWGGT 1 cut(s) 369
MaeI CTAG 4 cut(s) 165, 480, 515, 684
MaeII ACGT 3 cut(s) 88, 102, 255
MaeIII GTNAC 3 cut(s) 127, 337, 595
MalI GATC 5 cut(s) 45, 123, 188, 422, 553
MbiI CCGCTC 1 cut(s) 778
MboI GATC 5 cut(s) 43, 121, 186, 420, 551
MboII GAAGA 4 cut(s) 29, 137, 677, 845
MfeI CAATTG 1 cut(s) 505
MflI RGATCY 2 cut(s) 121, 420
MhlI GDGCHC 1 cut(s) 876
MlsI TGGCCA 1 cut(s) 294
MluCI AATT 4 cut(s) 225, 299, 437, 505
MluNI TGGCCA 1 cut(s) 294
MlyI GAGTC 2 cut(s) 243, 622
MmeI TCCRAC 3 cut(s) 99, 123, 325
Mox20I TGGCCA 1 cut(s) 294
MscI TGGCCA 1 cut(s) 294
MseI TTAA 4 cut(s) 51, 170, 315, 489
Msp20I TGGCCA 1 cut(s) 294
MspR9I CCNGG 2 cut(s) 371, 720
MssI GTTTAAAC 1 cut(s) 171
MunI CAATTG 1 cut(s) 505
MvaI CCWGG 2 cut(s) 371, 720
MwoI GCNNNNNNNGC 4 cut(s) 611, 620, 701, 856
NcoI CCATGG 1 cut(s) 557
NdeII GATC 5 cut(s) 43, 121, 186, 420, 551
NlaIII CATG 4 cut(s) 361, 561, 623, 880
NlaIV GGNNCC 3 cut(s) 97, 123, 240
NmuCI GTSAC 1 cut(s) 595
NspI RCATGY 1 cut(s) 623
NspV TTCGAA 2 cut(s) 11, 434
PaeI GCATGC 1 cut(s) 623
PcsI WCGNNNNNNNCGW 1 cut(s) 813
PfeI GAWTC 1 cut(s) 809
PkrI GCNGC 1 cut(s) 658
PleI GAGTC 2 cut(s) 243, 622
PmeI GTTTAAAC 1 cut(s) 171
PpsI GAGTC 2 cut(s) 243, 622
Psp6I CCWGG 2 cut(s) 369, 718
PspGI CCWGG 2 cut(s) 369, 718
PspN4I GGNNCC 3 cut(s) 97, 123, 240
PspPI GGNCC 3 cut(s) 238, 716, 883
PsuI RGATCY 2 cut(s) 121, 420
RsaI GTAC 5 cut(s) 87, 105, 539, 574, 819
RsaNI GTAC 5 cut(s) 86, 104, 538, 573, 818
SaqAI TTAA 4 cut(s) 51, 170, 315, 489
SatI GCNGC 1 cut(s) 657
Sau3AI GATC 5 cut(s) 43, 121, 186, 420, 551
Sau96I GGNCC 3 cut(s) 238, 716, 883
SchI GAGTC 2 cut(s) 243, 622
ScrFI CCNGG 2 cut(s) 371, 720
SduI GDGCHC 1 cut(s) 876
SexAI ACCWGGT 1 cut(s) 369
SfaNI GCATC 2 cut(s) 182, 601
SfuI TTCGAA 2 cut(s) 11, 434
SinI GGWCC 2 cut(s) 716, 883
SpeI ACTAGT 1 cut(s) 164
SphI GCATGC 1 cut(s) 623
Sse9I AATT 4 cut(s) 225, 299, 437, 505
SsiI CCGC 2 cut(s) 657, 778
SspI AATATT 2 cut(s) 55, 398
SspMI CTAG 4 cut(s) 165, 480, 515, 684
StyD4I CCNGG 2 cut(s) 369, 718
StyI CCWWGG 2 cut(s) 177, 557
TaaI ACNGT 6 cut(s) 85, 343, 595, 601, 817, 923
TaiI ACGT 3 cut(s) 91, 105, 258
TaqI TCGA 3 cut(s) 11, 434, 807
TasI AATT 4 cut(s) 225, 299, 437, 505
TatI WGTACW 2 cut(s) 537, 572
TauI GCSGC 1 cut(s) 659
TfiI GAWTC 1 cut(s) 809
Tru1I TTAA 4 cut(s) 51, 170, 315, 489
Tru9I TTAA 4 cut(s) 51, 170, 315, 489
TscAI CASTG 4 cut(s) 88, 313, 394, 600
TseFI GTSAC 1 cut(s) 595
Tsp45I GTSAC 1 cut(s) 595
TspDTI ATGAA 5 cut(s) 373, 461, 625, 777, 831
TspGWI ACGGA 2 cut(s) 213, 621
TspRI CASTG 4 cut(s) 88, 313, 394, 600
VpaK11BI GGWCC 2 cut(s) 716, 883
XapI RAATTY 1 cut(s) 299
XceI RCATGY 1 cut(s) 623
XspI CTAG 4 cut(s) 165, 480, 515, 684
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.