Rh1DG088700

FAD binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0002765
Physical Location & Seq
Forward (+)
16523514 .. 16525215
1702 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG088700.1

Sequence Viewer

Length: 807 bp
ATGAGATGTGTAAGAAGGACCCATCTGGTTAATATTTTGGCTCAAAATCTGCCACTCGAAACTGTACGTTATGGCTGCAACGTACTTTCGATTGAGTTGGATCCTGTAACATCTTATCCAGTTCTTCAACTTCAAAATGGAACAACATTGAACGCCAAGGTTGTGATCGGATGTGACGGAGTGAACTCCAAGATAACAAATCTGATTGGGGCGAAGGCGCCAAATAGACTCAATGTAATTGGAGTAAGAAGCTTTACAATTTATCCAAATGGCCACAAATTCGGCAGTGAGTTTAAGATGATAAGAAAAGGTGATGTTACGGTCGGAGTAATACCCATGACCACCAACCAGGTTCATTGGTTCATCACTAGAAAATATCTTTCACAAGAAGGAACAGTGACAGTTGCAGGAGATGCCTTGCATGCAATGACTCCGTTCATTGCTCAGGGTGGCTCAGCCGCTTTGGAAGACGCAGTTGTCCTTGCTAGGTGCTTCGCACGAAAGGCTGTCGTCGGTGGTCCAGGTGAAATAGGAAGCAAACTTACGGTAGAGAAAGCATTTGATGAATACCTAAAAGAGCGGAAAACACGACTTCTAAGACTTACTTTCGAATCGACCCTACTCGGAAAGATGGAAGAAACTTCATCAAAGCTCATCAAGCTCTTACGTATTGTGCTCATGGTGGTCCTATTTCGCGACTCGGCCAAATTGACATCATTTTCGTATATTAGTGTTAACACTAATAACAACTTGATTATCACTTCTTACCACAACTCGCAATCTTATGGCTTAGACTTGGAATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3

Protein Analysis

268

Amino Acids

29.6

Weight (kDa)

9.49

Isoelectric Point (pI)

29.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 106 - 166 4.8e-06 FAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 476
AccB1I GGYRCC 1 cut(s) 217
AccBSI CCGCTC 1 cut(s) 580
AccII CGCG 1 cut(s) 696
AciI CCGC 2 cut(s) 459, 580
AclWI GGATC 2 cut(s) 95, 108
AcoI YGGCCR 2 cut(s) 271, 702
AcsI RAATTY 1 cut(s) 278
AcyI GRCGYC 1 cut(s) 218
AfaI GTAC 2 cut(s) 66, 84
AgsI TTSAA 3 cut(s) 128, 134, 151
AjnI CCWGG 2 cut(s) 348, 520
AluBI AGCT 3 cut(s) 252, 652, 661
AluI AGCT 3 cut(s) 252, 652, 661
Alw21I GWGCWC 1 cut(s) 678
AlwI GGATC 2 cut(s) 95, 108
AoxI GGCC 2 cut(s) 271, 702
ApeKI GCWGC 1 cut(s) 75
ApoI RAATTY 1 cut(s) 278
ArsI GACNNNNNNTTYG 2 cut(s) 703, 735
AspLEI GCGC 1 cut(s) 220
AspS9I GGNCC 3 cut(s) 18, 518, 685
AsuHPI GGTGA 2 cut(s) 323, 536
AsuII TTCGAA 1 cut(s) 609
AvaII GGWCC 3 cut(s) 18, 518, 685
BalI TGGCCA 1 cut(s) 273
BamHI GGATCC 1 cut(s) 100
BanI GGYRCC 1 cut(s) 217
BarI GAAGNNNNNNTAC 2 cut(s) 526, 558
BbsI GAAGAC 1 cut(s) 474
Bbv12I GWGCWC 1 cut(s) 678
BbvI GCAGC 1 cut(s) 62
BccI CCATC 2 cut(s) 30, 625
BciT130I CCWGG 2 cut(s) 350, 522
BfaI CTAG 2 cut(s) 369, 486
BfoI RGCGCY 1 cut(s) 221
BisI GCNGC 2 cut(s) 76, 459
BlpI GCTNAGC 1 cut(s) 454
BlsI GCNGC 2 cut(s) 77, 460
Bme1390I CCNGG 2 cut(s) 350, 522
Bme18I GGWCC 3 cut(s) 18, 518, 685
BmgT120I GGNCC 3 cut(s) 18, 518, 685
BmiI GGNNCC 3 cut(s) 20, 102, 219
BmrFI CCNGG 2 cut(s) 350, 522
BmsI GCATC 1 cut(s) 403
BpiI GAAGAC 1 cut(s) 474
Bpu10I CCTNAGC 1 cut(s) 444
Bpu1102I GCTNAGC 1 cut(s) 454
Bpu14I TTCGAA 1 cut(s) 609
BsaAI YACGTR 1 cut(s) 668
BsaHI GRCGYC 1 cut(s) 218
BsaJI CCNNGG 1 cut(s) 156
Bse1I ACTGG 1 cut(s) 119
Bse3DI GCAATG 2 cut(s) 432, 438
BseBI CCWGG 2 cut(s) 350, 522
BseDI CCNNGG 1 cut(s) 156
BseGI GGATG 1 cut(s) 176
BseMI GCAATG 2 cut(s) 432, 438
BseMII CTCAG 2 cut(s) 458, 468
BseNI ACTGG 1 cut(s) 119
BseXI GCAGC 1 cut(s) 62
Bsh1236I CGCG 1 cut(s) 696
Bsh1285I CGRYCG 1 cut(s) 324
BshFI GGCC 2 cut(s) 273, 704
BshNI GGYRCC 1 cut(s) 217
BsiEI CGRYCG 1 cut(s) 324
BsiHKAI GWGCWC 1 cut(s) 678
BsnI GGCC 2 cut(s) 273, 704
Bsp119I TTCGAA 1 cut(s) 609
Bsp1286I GDGCHC 1 cut(s) 678
Bsp143I GATC 2 cut(s) 100, 165
Bsp1720I GCTNAGC 1 cut(s) 454
Bsp68I TCGCGA 1 cut(s) 696
BspACI CCGC 2 cut(s) 459, 580
BspANI GGCC 2 cut(s) 273, 704
BspCNI CTCAG 2 cut(s) 457, 467
BspFNI CGCG 1 cut(s) 696
BspLI GGNNCC 3 cut(s) 20, 102, 219
BspPI GGATC 2 cut(s) 95, 108
BspT104I TTCGAA 1 cut(s) 609
BspT107I GGYRCC 1 cut(s) 217
BsrBI CCGCTC 1 cut(s) 580
BsrDI GCAATG 2 cut(s) 432, 438
BsrI ACTGG 1 cut(s) 119
BssECI CCNNGG 1 cut(s) 156
BssMI GATC 2 cut(s) 100, 165
BssNI GRCGYC 1 cut(s) 218
BssT1I CCWWGG 1 cut(s) 156
Bst2UI CCWGG 2 cut(s) 350, 522
Bst4CI ACNGT 5 cut(s) 64, 322, 397, 403, 547
BstACI GRCGYC 1 cut(s) 218
BstAPI GCANNNNNTGC 1 cut(s) 413
BstBAI YACGTR 1 cut(s) 668
BstBI TTCGAA 1 cut(s) 609
BstC8I GCNNGC 1 cut(s) 423
BstDEI CTNAG 4 cut(s) 444, 454, 596, 790
BstF5I GGATG 1 cut(s) 176
BstFNI CGCG 1 cut(s) 696
BstH2I RGCGCY 1 cut(s) 221
BstHHI GCGC 1 cut(s) 220
BstKTI GATC 2 cut(s) 103, 168
BstMBI GATC 2 cut(s) 100, 165
BstMCI CGRYCG 1 cut(s) 324
BstMWI GCNNNNNNNGC 4 cut(s) 413, 422, 503, 658
BstNI CCWGG 2 cut(s) 350, 522
BstNSI RCATGY 1 cut(s) 425
BstSCI CCNGG 2 cut(s) 348, 520
BstSNI TACGTA 1 cut(s) 668
BstUI CGCG 1 cut(s) 696
BstV1I GCAGC 1 cut(s) 62
BstV2I GAAGAC 1 cut(s) 474
BstX2I RGATCY 1 cut(s) 100
BstYI RGATCY 1 cut(s) 100
BsuRI GGCC 2 cut(s) 273, 704
BtsCI GGATG 1 cut(s) 176
BtsI GCAGTG 1 cut(s) 292
BtsIMutI CAGTG 2 cut(s) 292, 402
BtuMI TCGCGA 1 cut(s) 696
Cac8I GCNNGC 1 cut(s) 423
CfoI GCGC 1 cut(s) 220
Cfr13I GGNCC 3 cut(s) 18, 518, 685
CseI GACGC 1 cut(s) 479
CsiI ACCWGGT 1 cut(s) 348
Csp6I GTAC 2 cut(s) 65, 83
CviAII CATG 3 cut(s) 337, 422, 679
CviQI GTAC 2 cut(s) 65, 83
DdeI CTNAG 4 cut(s) 444, 454, 596, 790
DinI GGCGCC 1 cut(s) 219
DpnI GATC 2 cut(s) 102, 167
DpnII GATC 2 cut(s) 100, 165
DrdI GACNNNNNNGTC 1 cut(s) 476
DseDI GACNNNNNNGTC 1 cut(s) 476
EaeI YGGCCR 2 cut(s) 271, 702
Eco105I TACGTA 1 cut(s) 668
Eco130I CCWWGG 1 cut(s) 156
Eco47I GGWCC 3 cut(s) 18, 518, 685
EcoO109I RGGNCCY 1 cut(s) 18
EcoRII CCWGG 2 cut(s) 348, 520
EcoT14I CCWWGG 1 cut(s) 156
EgeI GGCGCC 1 cut(s) 219
EheI GGCGCC 1 cut(s) 219
ErhI CCWWGG 1 cut(s) 156
FaeI CATG 3 cut(s) 340, 425, 682
FaiI YATR 6 cut(s) 72, 338, 423, 680, 726, 786
FalI AAGNNNNNCTT 2 cut(s) 589, 621
FatI CATG 3 cut(s) 336, 421, 678
Fnu4HI GCNGC 2 cut(s) 76, 459
FokI GGATG 1 cut(s) 183
Fsp4HI GCNGC 2 cut(s) 76, 459
FspBI CTAG 2 cut(s) 369, 486
GlaI GCGC 1 cut(s) 219
GluI GCNGC 2 cut(s) 76, 459
HaeII RGCGCY 1 cut(s) 221
HaeIII GGCC 2 cut(s) 273, 704
HgaI GACGC 1 cut(s) 479
HhaI GCGC 1 cut(s) 220
Hin1I GRCGYC 1 cut(s) 218
Hin1II CATG 3 cut(s) 340, 425, 682
Hin6I GCGC 1 cut(s) 218
HinP1I GCGC 1 cut(s) 218
HincII GTYRAC 1 cut(s) 736
HindII GTYRAC 1 cut(s) 736
HindIII AAGCTT 1 cut(s) 250
HinfI GANTC 4 cut(s) 228, 430, 611, 698
HpaI GTTAAC 1 cut(s) 736
HphI GGTGA 2 cut(s) 323, 536
Hpy166II GTNNAC 2 cut(s) 184, 736
Hpy188I TCNGA 4 cut(s) 170, 204, 326, 626
Hpy188III TCNNGA 1 cut(s) 695
Hpy8I GTNNAC 2 cut(s) 184, 736
Hpy99I CGWCG 1 cut(s) 515
HpyAV CCTTC 3 cut(s) 9, 208, 383
HpyCH4III ACNGT 5 cut(s) 64, 322, 397, 403, 547
HpyCH4IV ACGT 3 cut(s) 67, 81, 667
HpyCH4V TGCA 4 cut(s) 78, 407, 421, 425
HpyF10VI GCNNNNNNNGC 4 cut(s) 413, 422, 503, 658
HpyF3I CTNAG 4 cut(s) 444, 454, 596, 790
HpySE526I ACGT 3 cut(s) 67, 81, 667
Hsp92I GRCGYC 1 cut(s) 218
Hsp92II CATG 3 cut(s) 340, 425, 682
HspAI GCGC 1 cut(s) 218
KasI GGCGCC 1 cut(s) 217
KspAI GTTAAC 1 cut(s) 736
Kzo9I GATC 2 cut(s) 100, 165
LpnPI CCDG 9 cut(s) 11, 117, 132, 335, 362, 393, 431, 507, 534
Lsp1109I GCAGC 1 cut(s) 62
LweI GCATC 1 cut(s) 403
MabI ACCWGGT 1 cut(s) 348
MaeI CTAG 2 cut(s) 369, 486
MaeII ACGT 3 cut(s) 67, 81, 667
MaeIII GTNAC 4 cut(s) 106, 173, 316, 397
MalI GATC 2 cut(s) 102, 167
MbiI CCGCTC 1 cut(s) 580
MboI GATC 2 cut(s) 100, 165
MboII GAAGA 3 cut(s) 116, 479, 647
MflI RGATCY 1 cut(s) 100
MhlI GDGCHC 1 cut(s) 678
MlsI TGGCCA 1 cut(s) 273
MluCI AATT 4 cut(s) 237, 258, 278, 707
MluNI TGGCCA 1 cut(s) 273
Mly113I GGCGCC 1 cut(s) 218
MlyI GAGTC 3 cut(s) 222, 424, 692
MmeI TCCRAC 2 cut(s) 78, 304
Mox20I TGGCCA 1 cut(s) 273
MscI TGGCCA 1 cut(s) 273
MseI TTAA 3 cut(s) 30, 294, 735
Msp20I TGGCCA 1 cut(s) 273
MspR9I CCNGG 2 cut(s) 350, 522
MvaI CCWGG 2 cut(s) 350, 522
MvnI CGCG 1 cut(s) 696
MwoI GCNNNNNNNGC 4 cut(s) 413, 422, 503, 658
NarI GGCGCC 1 cut(s) 218
NdeII GATC 2 cut(s) 100, 165
NlaIII CATG 3 cut(s) 340, 425, 682
NlaIV GGNNCC 3 cut(s) 20, 102, 219
NmeAIII GCCGAG 1 cut(s) 680
NmuCI GTSAC 2 cut(s) 173, 397
NruI TCGCGA 1 cut(s) 696
NspI RCATGY 1 cut(s) 425
NspV TTCGAA 1 cut(s) 609
PaeI GCATGC 1 cut(s) 425
PfeI GAWTC 1 cut(s) 611
PkrI GCNGC 2 cut(s) 77, 460
PleI GAGTC 3 cut(s) 222, 424, 692
PluTI GGCGCC 1 cut(s) 221
PpsI GAGTC 3 cut(s) 222, 424, 692
Ppu21I YACGTR 1 cut(s) 668
PpuMI RGGWCCY 1 cut(s) 18
Psp5II RGGWCCY 1 cut(s) 18
Psp6I CCWGG 2 cut(s) 348, 520
PspGI CCWGG 2 cut(s) 348, 520
PspN4I GGNNCC 3 cut(s) 20, 102, 219
PspPI GGNCC 3 cut(s) 18, 518, 685
PspPPI RGGWCCY 1 cut(s) 18
PsuI RGATCY 1 cut(s) 100
RruI TCGCGA 1 cut(s) 696
RsaI GTAC 2 cut(s) 66, 84
RsaNI GTAC 2 cut(s) 65, 83
SaqAI TTAA 3 cut(s) 30, 294, 735
SatI GCNGC 2 cut(s) 76, 459
Sau3AI GATC 2 cut(s) 100, 165
Sau96I GGNCC 3 cut(s) 18, 518, 685
SchI GAGTC 3 cut(s) 222, 424, 692
ScrFI CCNGG 2 cut(s) 350, 522
SduI GDGCHC 1 cut(s) 678
SexAI ACCWGGT 1 cut(s) 348
SfaNI GCATC 1 cut(s) 403
SfoI GGCGCC 1 cut(s) 219
SfuI TTCGAA 1 cut(s) 609
SinI GGWCC 3 cut(s) 18, 518, 685
SnaBI TACGTA 1 cut(s) 668
SphI GCATGC 1 cut(s) 425
Sse9I AATT 4 cut(s) 237, 258, 278, 707
SsiI CCGC 2 cut(s) 459, 580
SspDI GGCGCC 1 cut(s) 217
SspI AATATT 2 cut(s) 34, 803
SspMI CTAG 2 cut(s) 369, 486
StyD4I CCNGG 2 cut(s) 348, 520
StyI CCWWGG 1 cut(s) 156
TaaI ACNGT 5 cut(s) 64, 322, 397, 403, 547
TaiI ACGT 3 cut(s) 70, 84, 670
TaqI TCGA 4 cut(s) 57, 89, 609, 614
TasI AATT 4 cut(s) 237, 258, 278, 707
TauI GCSGC 1 cut(s) 461
TfiI GAWTC 1 cut(s) 611
Tru1I TTAA 3 cut(s) 30, 294, 735
Tru9I TTAA 3 cut(s) 30, 294, 735
TscAI CASTG 2 cut(s) 292, 402
TseFI GTSAC 2 cut(s) 173, 397
TseI GCWGC 1 cut(s) 75
Tsp45I GTSAC 2 cut(s) 173, 397
TspDTI ATGAA 5 cut(s) 344, 352, 427, 579, 633
TspGWI ACGGA 2 cut(s) 192, 423
TspRI CASTG 2 cut(s) 292, 402
VpaK11BI GGWCC 3 cut(s) 18, 518, 685
XapI RAATTY 1 cut(s) 278
XceI RCATGY 1 cut(s) 425
XspI CTAG 2 cut(s) 369, 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.