Rroxscaffold_2G00151770

FAD binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0002765
Physical Location & Seq
Reverse (-)
88942255 .. 88943998
1744 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00151770.1

Sequence Viewer

Length: 873 bp
ATGGAAGATACATTTTATGCTGTGAGTTACTTGAATAAACTTTATACTTCTCAGTCGTATTCAAACGTACAATTGGTTGTACCTGAAACTGAACCAATTGGGTCAATCAAGAGATATATATTTGAAGGGGAAGGGAAAAAGTTGTTGATGGTTCAAATATACTTGGACTATGAAGATGGCGGTTACATTCGGGTCACAAAGAAATTTAAAGTATTAGAATTGAATTCACAGAAGGATGTTGAGAAACTCATGAAGAGGAGCTGGCGCCTTCTGCCAATTAGATCAAAGGCAATGATGATAGAGATGGCAGAAGATACAAGAGAAAATATTGTGATTGTGGGTGGTGGGATTTTTAGCCTTGCCACTGCTCTTGCTCTTCACAGGAAGGGCATAAGAAGCTTGGTCCTAGAAAGATCAGAGAGTTTGCGAGCAACGGGAGTAGCTATCATTATTCATTCTAATGGATGGCGTGCACTTGATCAACTTGGTGTTGCCTCCTATCTTAGACAAACTGCTAATCCTATACTATCGAAAGAAGAATTACGATGTGTGAAAAGGACTGATCTGATGAATATCATGGCTGATAATCTGCCACAAAACACCGTACGTTTTGGGTGCAACGTACTTTCTATCGAGTTGGATCCCATAACTTCTTCTCCAGTTCTTCAACTTCAAGATGGAACCAGTTTGAATGCCAAGGTTGTGATCGGATGCGATGGATTGAACTCTACGATTTCATATATGATGGGGGCGACAGCTACAAATATATTCAACGTTTGTGGGATAAGAGGTTTCACAAGTTATCCAAGTGGTCATGAATTCGGCAGTGAGTTCAAACACCCCAAAAAAGATGATGTTCAAGTCGGGTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3

Protein Analysis

290

Amino Acids

32.34

Weight (kDa)

8.55

Isoelectric Point (pI)

46.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 110 - 176 5.4e-08 FAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 264
AciI CCGC 1 cut(s) 180
AclI AACGTT 1 cut(s) 774
AclWI GGATC 2 cut(s) 635, 648
AcsI RAATTY 3 cut(s) 203, 223, 818
AcyI GRCGYC 1 cut(s) 265
AfaI GTAC 4 cut(s) 69, 81, 606, 624
AluBI AGCT 4 cut(s) 261, 399, 443, 758
AluI AGCT 4 cut(s) 261, 399, 443, 758
Alw21I GWGCWC 1 cut(s) 475
Alw44I GTGCAC 1 cut(s) 471
AlwI GGATC 2 cut(s) 635, 648
ApaLI GTGCAC 1 cut(s) 471
ApoI RAATTY 3 cut(s) 203, 223, 818
AspLEI GCGC 1 cut(s) 267
AspS9I GGNCC 1 cut(s) 403
AvaII GGWCC 1 cut(s) 403
BaeGI GKGCMC 1 cut(s) 475
BamHI GGATCC 1 cut(s) 640
BanI GGYRCC 1 cut(s) 264
Bbv12I GWGCWC 1 cut(s) 475
BccI CCATC 7 cut(s) 142, 170, 298, 459, 671, 710, 739
BclI TGATCA 1 cut(s) 478
BfaI CTAG 1 cut(s) 407
BfoI RGCGCY 1 cut(s) 268
Bme18I GGWCC 1 cut(s) 403
BmgT120I GGNCC 1 cut(s) 403
BmiI GGNNCC 3 cut(s) 266, 642, 682
BmsI GCATC 1 cut(s) 701
BpmI CTGGAG 1 cut(s) 642
BsaBI GATNNNNATC 1 cut(s) 572
BsaHI GRCGYC 1 cut(s) 265
BsaJI CCNNGG 1 cut(s) 696
BsaXI ACNNNNNCTCC 2 cut(s) 640, 670
Bse1I ACTGG 2 cut(s) 659, 684
Bse3DI GCAATG 1 cut(s) 297
Bse8I GATNNNNATC 1 cut(s) 572
BseDI CCNNGG 1 cut(s) 696
BseGI GGATG 3 cut(s) 241, 470, 716
BseJI GATNNNNATC 1 cut(s) 572
BseMI GCAATG 1 cut(s) 297
BseMII CTCAG 1 cut(s) 65
BseNI ACTGG 2 cut(s) 659, 684
BseRI GAGGAG 1 cut(s) 271
BseSI GKGCMC 1 cut(s) 475
BshNI GGYRCC 1 cut(s) 264
BsiHKAI GWGCWC 1 cut(s) 475
BsiWI CGTACG 1 cut(s) 604
BsmI GAATGC 1 cut(s) 697
Bsp1286I GDGCHC 1 cut(s) 475
Bsp143I GATC 6 cut(s) 281, 413, 478, 562, 640, 705
BspACI CCGC 1 cut(s) 180
BspCNI CTCAG 1 cut(s) 64
BspHI TCATGA 2 cut(s) 249, 814
BspLI GGNNCC 3 cut(s) 266, 642, 682
BspPI GGATC 2 cut(s) 635, 648
BspQI GCTCTTC 1 cut(s) 381
BspT107I GGYRCC 1 cut(s) 264
BsrDI GCAATG 1 cut(s) 297
BsrI ACTGG 2 cut(s) 659, 684
BssECI CCNNGG 1 cut(s) 696
BssMI GATC 6 cut(s) 281, 413, 478, 562, 640, 705
BssNI GRCGYC 1 cut(s) 265
BssT1I CCWWGG 1 cut(s) 696
Bst4CI ACNGT 1 cut(s) 604
Bst6I CTCTTC 2 cut(s) 248, 381
BstACI GRCGYC 1 cut(s) 265
BstC8I GCNNGC 3 cut(s) 263, 429, 471
BstDEI CTNAG 2 cut(s) 51, 503
BstF5I GGATG 3 cut(s) 241, 470, 716
BstH2I RGCGCY 1 cut(s) 268
BstHHI GCGC 1 cut(s) 267
BstKTI GATC 6 cut(s) 284, 416, 481, 565, 643, 708
BstMBI GATC 6 cut(s) 281, 413, 478, 562, 640, 705
BstMWI GCNNNNNNNGC 2 cut(s) 271, 396
BstSLI GKGCMC 1 cut(s) 475
BstX2I RGATCY 1 cut(s) 640
BstYI RGATCY 1 cut(s) 640
BtgZI GCGATG 1 cut(s) 729
BtsCI GGATG 3 cut(s) 241, 470, 716
BtsI GCAGTG 2 cut(s) 363, 832
BtsIMutI CAGTG 2 cut(s) 363, 832
Cac8I GCNNGC 3 cut(s) 263, 429, 471
CciI TCATGA 2 cut(s) 249, 814
CfoI GCGC 1 cut(s) 267
Cfr13I GGNCC 1 cut(s) 403
Csp6I GTAC 4 cut(s) 68, 80, 605, 623
CspCI CAANNNNNGTGG 4 cut(s) 352, 387, 760, 795
CviAII CATG 3 cut(s) 250, 577, 815
CviJI RGCY 6 cut(s) 261, 357, 399, 443, 581, 758
CviKI_1 RGCY 6 cut(s) 261, 357, 399, 443, 581, 758
CviQI GTAC 4 cut(s) 68, 80, 605, 623
DdeI CTNAG 2 cut(s) 51, 503
DinI GGCGCC 1 cut(s) 266
DpnI GATC 6 cut(s) 283, 415, 480, 564, 642, 707
DpnII GATC 6 cut(s) 281, 413, 478, 562, 640, 705
DraI TTTAAA 1 cut(s) 208
Eam1104I CTCTTC 2 cut(s) 248, 381
EarI CTCTTC 2 cut(s) 248, 381
Eco130I CCWWGG 1 cut(s) 696
Eco47I GGWCC 1 cut(s) 403
EcoRI GAATTC 2 cut(s) 223, 818
EcoT14I CCWWGG 1 cut(s) 696
EgeI GGCGCC 1 cut(s) 266
EheI GGCGCC 1 cut(s) 266
ErhI CCWWGG 1 cut(s) 696
FaeI CATG 3 cut(s) 253, 580, 818
FatI CATG 3 cut(s) 249, 576, 814
FbaI TGATCA 1 cut(s) 478
FokI GGATG 3 cut(s) 248, 477, 723
FspBI CTAG 1 cut(s) 407
GlaI GCGC 1 cut(s) 266
GsuI CTGGAG 1 cut(s) 642
HaeII RGCGCY 1 cut(s) 268
HhaI GCGC 1 cut(s) 267
Hin1I GRCGYC 1 cut(s) 265
Hin1II CATG 3 cut(s) 253, 580, 818
Hin6I GCGC 1 cut(s) 265
HinP1I GCGC 1 cut(s) 265
HindIII AAGCTT 1 cut(s) 397
Hpy166II GTNNAC 1 cut(s) 473
Hpy188I TCNGA 3 cut(s) 418, 567, 710
Hpy188III TCNNGA 4 cut(s) 109, 250, 674, 815
Hpy8I GTNNAC 1 cut(s) 473
HpyAV CCTTC 5 cut(s) 119, 125, 226, 278, 379
HpyCH4III ACNGT 1 cut(s) 604
HpyCH4IV ACGT 4 cut(s) 66, 607, 621, 774
HpyCH4V TGCA 2 cut(s) 473, 618
HpyF10VI GCNNNNNNNGC 2 cut(s) 271, 396
HpyF3I CTNAG 2 cut(s) 51, 503
HpySE526I ACGT 4 cut(s) 66, 607, 621, 774
Hsp92I GRCGYC 1 cut(s) 265
Hsp92II CATG 3 cut(s) 253, 580, 818
HspAI GCGC 1 cut(s) 265
KasI GGCGCC 1 cut(s) 264
Ksp22I TGATCA 1 cut(s) 478
Kzo9I GATC 6 cut(s) 281, 413, 478, 562, 640, 705
LguI GCTCTTC 1 cut(s) 381
LmnI GCTCC 1 cut(s) 258
LpnPI CCDG 5 cut(s) 96, 247, 367, 672, 697
LweI GCATC 1 cut(s) 701
MaeI CTAG 1 cut(s) 407
MaeII ACGT 4 cut(s) 66, 607, 621, 774
MaeIII GTNAC 3 cut(s) 26, 182, 193
MalI GATC 6 cut(s) 283, 415, 480, 564, 642, 707
MboI GATC 6 cut(s) 281, 413, 478, 562, 640, 705
MboII GAAGA 8 cut(s) 17, 185, 265, 323, 368, 548, 645, 656
MfeI CAATTG 2 cut(s) 71, 96
MflI RGATCY 1 cut(s) 640
MhlI GDGCHC 1 cut(s) 475
MluCI AATT 8 cut(s) 71, 96, 203, 218, 223, 276, 539, 818
Mly113I GGCGCC 1 cut(s) 265
MmeI TCCRAC 1 cut(s) 618
MnlI CCTC 3 cut(s) 249, 505, 782
MseI TTAA 1 cut(s) 207
MslI CAYNNNNRTG 1 cut(s) 459
MunI CAATTG 2 cut(s) 71, 96
Mva1269I GAATGC 1 cut(s) 697
MwoI GCNNNNNNNGC 2 cut(s) 271, 396
NarI GGCGCC 1 cut(s) 265
NdeII GATC 6 cut(s) 281, 413, 478, 562, 640, 705
NlaIII CATG 3 cut(s) 253, 580, 818
NlaIV GGNNCC 3 cut(s) 266, 642, 682
NmuCI GTSAC 1 cut(s) 193
PagI TCATGA 2 cut(s) 249, 814
PciSI GCTCTTC 1 cut(s) 381
PctI GAATGC 1 cut(s) 697
Pfl23II CGTACG 1 cut(s) 604
PluTI GGCGCC 1 cut(s) 268
Psp1406I AACGTT 1 cut(s) 774
PspLI CGTACG 1 cut(s) 604
PspN4I GGNNCC 3 cut(s) 266, 642, 682
PspPI GGNCC 1 cut(s) 403
PsuI RGATCY 1 cut(s) 640
RsaI GTAC 4 cut(s) 69, 81, 606, 624
RsaNI GTAC 4 cut(s) 68, 80, 605, 623
RseI CAYNNNNRTG 1 cut(s) 459
SapI GCTCTTC 1 cut(s) 381
SaqAI TTAA 1 cut(s) 207
Sau3AI GATC 6 cut(s) 281, 413, 478, 562, 640, 705
Sau96I GGNCC 1 cut(s) 403
SduI GDGCHC 1 cut(s) 475
SfaNI GCATC 1 cut(s) 701
SfoI GGCGCC 1 cut(s) 266
SinI GGWCC 1 cut(s) 403
SmiMI CAYNNNNRTG 1 cut(s) 459
Sse9I AATT 8 cut(s) 71, 96, 203, 218, 223, 276, 539, 818
SsiI CCGC 1 cut(s) 180
SspDI GGCGCC 1 cut(s) 264
SspI AATATT 1 cut(s) 328
SspMI CTAG 1 cut(s) 407
StyI CCWWGG 1 cut(s) 696
TaaI ACNGT 1 cut(s) 604
TaiI ACGT 4 cut(s) 69, 610, 624, 777
TaqI TCGA 2 cut(s) 530, 633
TasI AATT 8 cut(s) 71, 96, 203, 218, 223, 276, 539, 818
Tru1I TTAA 1 cut(s) 207
Tru9I TTAA 1 cut(s) 207
TscAI CASTG 2 cut(s) 370, 832
TseFI GTSAC 1 cut(s) 193
Tsp45I GTSAC 1 cut(s) 193
TspDTI ATGAA 6 cut(s) 186, 266, 443, 584, 726, 831
TspRI CASTG 2 cut(s) 370, 832
VneI GTGCAC 1 cut(s) 471
VpaK11BI GGWCC 1 cut(s) 403
XapI RAATTY 3 cut(s) 203, 223, 818
XspI CTAG 1 cut(s) 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.