Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008385.1

Orthogroup ID

OG0002765

Physical Location & Seq

Genomic Coordinates Reverse (-)

64940 .. 66847

Gene Structure 1908 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008385.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

atgatgatggagatggcagaagatacaagagaaaatattgtgattgtgggtggagggatttgtggccttgccactgctcttgctcttcacaggaagggcgtaagaagcttggtcctagaaagatcagagagtttgcgagcaacgggagtagctatcattattcattctaatggatggcgtgcacttgatcaacttggtgttgcctcctatcttagacaaactgctaatccaatactatcgaaagaagaattacgatgtgtgaaaaggactgatctgatgaatatcatggctgataatctgccacaaaacaccgtacgttttgggtgcaacgtactttctatcaagttggatcccatgacttcttttccagttcttcaacttcaagatggaaccagtttgaatgccaaggttgtgatcggatgcgatggagtgaactctacgatttcatatatgatgggggcgacgggtacaaatatattcaacgtatgtgggataagaggtttcacaagttatccaagtggtcatgaattcggcagtgagctcaaactcaccaaaaaagatgatgttcaagtcggactattgcccatgaccaccaacctggtttattggttccttactcgcaaatatatatcgtgcaagtccaagatctcccacagccagaaattaattggggatatggcagctgcatcagtgaaggactttccttctagcatcaaagagatggtagagaattgctcactagagtctctacatctttcagactacatgagataccgaccaccgtgtgacgtactacgaagacgatttcgggtgggaacaataacagtggcaggagatgcctggcatgcaatgggtccgttcattgctcaaggtggctcagcctctttggaagatgcagttgtgctggctaggtgcttggcgcgaaggactattgttggtattccaagtggaagaatgagcaagacgatggtagaagaagcacttgatgaatacctaaaagagcggaaacctcgagttctaagactatctttgcagacgtacctaattgggaaaatgcatgatacttcatcaaaatttatcaagttcatatgcagtgtgttcatggcgatcatattctacgactcgcatggacatactcgttatgattgtggtaccctctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_3

Protein Analysis

386

Amino Acids

42.74

Weight (kDa)

9.05

Isoelectric Point (pI)

40.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002765)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15760 AT4G15760
fragaria_vesca	FvH4_7g03910
malus_domestica	MD07G1043700.v1.1 MD10G1041900.v1.1 MD10G1042000.v1.1
prunus_persica	Prupe.2G043900_v2.0.a1 Prupe.8G046000_v2.0.a1 Prupe.8G046000_v2.0.a1 Prupe.8G046000_v2.0.a1 Prupe.8G046000_v2.0.a1 Prupe.8G046000_v2.0.a1
pyrus_communis	pycom10g02900 pycom10g02910
rosa_chinensis	RchiOBHm_Chr1g0327481 RchiOBHm_Chr1g0327491 RchiOBHm_Chr2g0087851
rosa_laevigata	RLG00000015907 RLG00000029990
rosa_multiflora	Rmu_sc0003600.1_g000007 Rmu_sc0008385.1_g000017 Rmu_ssc0000042.1_g000053
rosa_roxburghii	Rroxscaffold_2G00151770 Rroxscaffold_2G00153170 Rroxscaffold_4G00322630
rosa_rugosa	Rorug01G0067300 Rorug01G0479000
rosa_samantha	Rh1AG084300 Rh1BG067000 Rh1CG082000 Rh1CG082100 Rh1DG088600 Rh1DG088700 Rh2AG033600 Rh2BG032800 Rh2CG033500 Rh2DG033200
rosa_wichuraiana	Rw1G006630 Rw2G002620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1151
AccB1I	GGYRCC	1 cut(s)	1151
AccBSI	CCGCTC	1 cut(s)	1003
AccII	CGCG	1 cut(s)	922
AciI	CCGC	1 cut(s)	1003
AclWI	GGATC	2 cut(s)	344, 357
AcsI	RAATTY	2 cut(s)	527, 1073
AdeI	CACNNNGTG	1 cut(s)	785
AfaI	GTAC	6 cut(s)	315, 333, 469, 792, 1040, 1153
AgsI	TTSAA	5 cut(s)	377, 383, 400, 481, 569
AjnI	CCWGG	2 cut(s)	597, 839
AluBI	AGCT	4 cut(s)	108, 152, 541, 683
AluI	AGCT	4 cut(s)	108, 152, 541, 683
Alw21I	GWGCWC	2 cut(s)	184, 543
Alw26I	GTCTC	1 cut(s)	750
Alw44I	GTGCAC	1 cut(s)	180
AlwI	GGATC	2 cut(s)	344, 357
Ama87I	CYCGRG	1 cut(s)	1011
AoxI	GGCC	1 cut(s)	64
ApaLI	GTGCAC	1 cut(s)	180
ApeKI	GCWGC	2 cut(s)	680, 683
ApoI	RAATTY	2 cut(s)	527, 1073
AseI	ATTAAT	1 cut(s)	665
Asp718I	GGTACC	1 cut(s)	1151
AspLEI	GCGC	1 cut(s)	922
AspS9I	GGNCC	2 cut(s)	112, 854
AsuHPI	GGTGA	1 cut(s)	541
AvaI	CYCGRG	1 cut(s)	1011
AvaII	GGWCC	2 cut(s)	112, 854
BaeGI	GKGCMC	1 cut(s)	184
BamHI	GGATCC	1 cut(s)	349
BanI	GGYRCC	1 cut(s)	1151
BanII	GRGCYC	1 cut(s)	543
BbsI	GAAGAC	1 cut(s)	805
Bbv12I	GWGCWC	2 cut(s)	184, 543
BbvI	GCAGC	2 cut(s)	670, 692
BccI	CCATC	7 cut(s)	7, 168, 380, 419, 448, 715, 961
BciT130I	CCWGG	2 cut(s)	599, 841
BclI	TGATCA	1 cut(s)	187
BcoDI	GTCTC	1 cut(s)	750
BfaI	CTAG	4 cut(s)	116, 708, 740, 909
BglII	AGATCT	1 cut(s)	645
BisI	GCNGC	2 cut(s)	681, 684
BlpI	GCTNAGC	1 cut(s)	877
BlsI	GCNGC	2 cut(s)	682, 685
Bme1390I	CCNGG	2 cut(s)	599, 841
Bme18I	GGWCC	2 cut(s)	112, 854
BmeT110I	CYCGRG	1 cut(s)	1011
BmgT120I	GGNCC	2 cut(s)	112, 854
BmiI	GGNNCC	5 cut(s)	351, 391, 611, 855, 1153
BmrFI	CCNGG	2 cut(s)	599, 841
BmsI	GCATC	5 cut(s)	410, 695, 720, 826, 883
BpiI	GAAGAC	1 cut(s)	805
BplI	GAGNNNNNCTC	2 cut(s)	719, 751
Bpu1102I	GCTNAGC	1 cut(s)	877
BpuEI	CTTGAG	1 cut(s)	852
BsaBI	GATNNNNATC	1 cut(s)	281
BsaJI	CCNNGG	1 cut(s)	405
Bse1I	ACTGG	2 cut(s)	368, 393
Bse3DI	GCAATG	2 cut(s)	855, 861
Bse8I	GATNNNNATC	1 cut(s)	281
BseBI	CCWGG	2 cut(s)	599, 841
BseDI	CCNNGG	1 cut(s)	405
BseGI	GGATG	2 cut(s)	179, 425
BseJI	GATNNNNATC	1 cut(s)	281
BseMI	GCAATG	2 cut(s)	855, 861
BseMII	CTCAG	1 cut(s)	891
BseNI	ACTGG	2 cut(s)	368, 393
BseSI	GKGCMC	1 cut(s)	184
BseXI	GCAGC	2 cut(s)	670, 692
Bsh1236I	CGCG	1 cut(s)	922
BshFI	GGCC	1 cut(s)	66
BshNI	GGYRCC	1 cut(s)	1151
BsiHKAI	GWGCWC	2 cut(s)	184, 543
BsiHKCI	CYCGRG	1 cut(s)	1011
BsiWI	CGTACG	1 cut(s)	313
BsmAI	GTCTC	1 cut(s)	750
BsmI	GAATGC	1 cut(s)	406
BsnI	GGCC	1 cut(s)	66
BsoBI	CYCGRG	1 cut(s)	1011
Bsp1286I	GDGCHC	2 cut(s)	184, 543
Bsp143I	GATC	7 cut(s)	122, 187, 271, 349, 414, 645, 1107
Bsp1720I	GCTNAGC	1 cut(s)	877
BspACI	CCGC	1 cut(s)	1003
BspANI	GGCC	1 cut(s)	66
BspCNI	CTCAG	1 cut(s)	890
BspFNI	CGCG	1 cut(s)	922
BspHI	TCATGA	1 cut(s)	523
BspLI	GGNNCC	5 cut(s)	351, 391, 611, 855, 1153
BspPI	GGATC	2 cut(s)	344, 357
BspQI	GCTCTTC	1 cut(s)	90
BspT107I	GGYRCC	1 cut(s)	1151
BsrBI	CCGCTC	1 cut(s)	1003
BsrDI	GCAATG	2 cut(s)	855, 861
BsrI	ACTGG	2 cut(s)	368, 393
BssECI	CCNNGG	1 cut(s)	405
BssMI	GATC	7 cut(s)	122, 187, 271, 349, 414, 645, 1107
BssT1I	CCWWGG	1 cut(s)	405
Bst2UI	CCWGG	2 cut(s)	599, 841
Bst4CI	ACNGT	3 cut(s)	313, 783, 826
Bst6I	CTCTTC	1 cut(s)	90
BstAPI	GCANNNNNTGC	1 cut(s)	836
BstC8I	GCNNGC	4 cut(s)	138, 180, 846, 906
BstDEI	CTNAG	3 cut(s)	212, 877, 1019
BstF5I	GGATG	2 cut(s)	179, 425
BstFNI	CGCG	1 cut(s)	922
BstHHI	GCGC	1 cut(s)	922
BstKTI	GATC	7 cut(s)	125, 190, 274, 352, 417, 648, 1110
BstMAI	GTCTC	1 cut(s)	750
BstMBI	GATC	7 cut(s)	122, 187, 271, 349, 414, 645, 1107
BstMWI	GCNNNNNNNGC	3 cut(s)	105, 836, 845
BstNI	CCWGG	2 cut(s)	599, 841
BstNSI	RCATGY	1 cut(s)	848
BstSCI	CCNGG	2 cut(s)	597, 839
BstSLI	GKGCMC	1 cut(s)	184
BstUI	CGCG	1 cut(s)	922
BstV1I	GCAGC	2 cut(s)	670, 692
BstV2I	GAAGAC	1 cut(s)	805
BstX2I	RGATCY	2 cut(s)	349, 645
BstXI	CCANNNNNNTGG	1 cut(s)	598
BstYI	RGATCY	2 cut(s)	349, 645
BsuRI	GGCC	1 cut(s)	66
BtgZI	GCGATG	1 cut(s)	438
BtsCI	GGATG	2 cut(s)	179, 425
BtsI	GCAGTG	3 cut(s)	72, 541, 1099
BtsIMutI	CAGTG	5 cut(s)	72, 541, 696, 831, 1099
Cac8I	GCNNGC	4 cut(s)	138, 180, 846, 906
CciI	TCATGA	1 cut(s)	523
CfoI	GCGC	1 cut(s)	922
Cfr13I	GGNCC	2 cut(s)	112, 854
CsiI	ACCWGGT	1 cut(s)	597
Csp6I	GTAC	6 cut(s)	314, 332, 468, 791, 1039, 1152
CspCI	CAANNNNNGTGG	6 cut(s)	61, 96, 469, 504, 807, 842
CviAII	CATG	9 cut(s)	286, 355, 524, 586, 766, 845, 1058, 1102, 1127
CviQI	GTAC	6 cut(s)	314, 332, 468, 791, 1039, 1152
DdeI	CTNAG	3 cut(s)	212, 877, 1019
DpnI	GATC	7 cut(s)	124, 189, 273, 351, 416, 647, 1109
DpnII	GATC	7 cut(s)	122, 187, 271, 349, 414, 645, 1107
DraIII	CACNNNGTG	1 cut(s)	785
Eam1104I	CTCTTC	1 cut(s)	90
EarI	CTCTTC	1 cut(s)	90
Ecl136II	GAGCTC	1 cut(s)	541
Eco130I	CCWWGG	1 cut(s)	405
Eco24I	GRGCYC	1 cut(s)	543
Eco47I	GGWCC	2 cut(s)	112, 854
Eco53kI	GAGCTC	1 cut(s)	541
Eco88I	CYCGRG	1 cut(s)	1011
EcoICRI	GAGCTC	1 cut(s)	541
EcoRI	GAATTC	1 cut(s)	527
EcoRII	CCWGG	2 cut(s)	597, 839
EcoT14I	CCWWGG	1 cut(s)	405
EcoT22I	ATGCAT	1 cut(s)	1059
EcoT38I	GRGCYC	1 cut(s)	543
ErhI	CCWWGG	1 cut(s)	405
FaeI	CATG	9 cut(s)	289, 358, 527, 589, 769, 848, 1061, 1105, 1130
FalI	AAGNNNNNCTT	4 cut(s)	966, 998, 1012, 1044
FatI	CATG	9 cut(s)	285, 354, 523, 585, 765, 844, 1057, 1101, 1126
FauNDI	CATATG	1 cut(s)	1088
FbaI	TGATCA	1 cut(s)	187
Fnu4HI	GCNGC	2 cut(s)	681, 684
FokI	GGATG	2 cut(s)	186, 432
FriOI	GRGCYC	1 cut(s)	543
Fsp4HI	GCNGC	2 cut(s)	681, 684
FspBI	CTAG	4 cut(s)	116, 708, 740, 909
GlaI	GCGC	1 cut(s)	921
GluI	GCNGC	2 cut(s)	681, 684
HaeIII	GGCC	1 cut(s)	66
HhaI	GCGC	1 cut(s)	922
Hin1II	CATG	9 cut(s)	289, 358, 527, 589, 769, 848, 1061, 1105, 1130
Hin6I	GCGC	1 cut(s)	920
HinP1I	GCGC	1 cut(s)	920
HindIII	AAGCTT	1 cut(s)	106
HinfI	GANTC	2 cut(s)	743, 1121
HphI	GGTGA	1 cut(s)	541
Hpy166II	GTNNAC	2 cut(s)	182, 433
Hpy188I	TCNGA	6 cut(s)	127, 276, 419, 575, 760, 1160
Hpy188III	TCNNGA	2 cut(s)	383, 524
Hpy8I	GTNNAC	2 cut(s)	182, 433
Hpy99I	CGWCG	1 cut(s)	466
HpyAV	CCTTC	4 cut(s)	88, 688, 714, 918
HpyCH4III	ACNGT	3 cut(s)	313, 783, 826
HpyCH4IV	ACGT	5 cut(s)	316, 330, 483, 789, 1037
HpyCH4V	TGCA	9 cut(s)	182, 327, 636, 686, 848, 896, 1033, 1057, 1092
HpyF10VI	GCNNNNNNNGC	3 cut(s)	105, 836, 845
HpyF3I	CTNAG	3 cut(s)	212, 877, 1019
HpySE526I	ACGT	5 cut(s)	316, 330, 483, 789, 1037
Hsp92II	CATG	9 cut(s)	289, 358, 527, 589, 769, 848, 1061, 1105, 1130
HspAI	GCGC	1 cut(s)	920
KpnI	GGTACC	1 cut(s)	1155
Ksp22I	TGATCA	1 cut(s)	187
Kzo9I	GATC	7 cut(s)	122, 187, 271, 349, 414, 645, 1107
LguI	GCTCTTC	1 cut(s)	90
Lsp1109I	GCAGC	2 cut(s)	670, 692
LweI	GCATC	5 cut(s)	410, 695, 720, 826, 883
MabI	ACCWGGT	1 cut(s)	597
MaeI	CTAG	4 cut(s)	116, 708, 740, 909
MaeII	ACGT	5 cut(s)	316, 330, 483, 789, 1037
MaeIII	GTNAC	1 cut(s)	785
MalI	GATC	7 cut(s)	124, 189, 273, 351, 416, 647, 1109
MbiI	CCGCTC	1 cut(s)	1003
MboI	GATC	7 cut(s)	122, 187, 271, 349, 414, 645, 1107
MboII	GAAGA	8 cut(s)	32, 77, 257, 365, 810, 902, 963, 986
MflI	RGATCY	2 cut(s)	349, 645
MhlI	GDGCHC	2 cut(s)	184, 543
MluCI	AATT	7 cut(s)	248, 527, 662, 666, 730, 1044, 1073
MlyI	GAGTC	2 cut(s)	752, 1115
MmeI	TCCRAC	2 cut(s)	327, 553
MnlI	CCTC	5 cut(s)	47, 214, 491, 892, 1020
Mph1103I	ATGCAT	1 cut(s)	1059
MseI	TTAA	1 cut(s)	665
MslI	CAYNNNNRTG	1 cut(s)	168
MspA1I	CMGCKG	1 cut(s)	683
MspR9I	CCNGG	2 cut(s)	599, 841
Mva1269I	GAATGC	1 cut(s)	406
MvaI	CCWGG	2 cut(s)	599, 841
MvnI	CGCG	1 cut(s)	922
MwoI	GCNNNNNNNGC	3 cut(s)	105, 836, 845
NdeI	CATATG	1 cut(s)	1088
NdeII	GATC	7 cut(s)	122, 187, 271, 349, 414, 645, 1107
NlaIII	CATG	9 cut(s)	289, 358, 527, 589, 769, 848, 1061, 1105, 1130
NlaIV	GGNNCC	5 cut(s)	351, 391, 611, 855, 1153
NmuCI	GTSAC	1 cut(s)	785
NsiI	ATGCAT	1 cut(s)	1059
NspI	RCATGY	1 cut(s)	848
PaeI	GCATGC	1 cut(s)	848
PaeR7I	CTCGAG	1 cut(s)	1011
PagI	TCATGA	1 cut(s)	523
PciSI	GCTCTTC	1 cut(s)	90
PctI	GAATGC	1 cut(s)	406
Pfl23II	CGTACG	1 cut(s)	313
PkrI	GCNGC	2 cut(s)	682, 685
PleI	GAGTC	2 cut(s)	751, 1115
PpsI	GAGTC	2 cut(s)	751, 1115
PshBI	ATTAAT	1 cut(s)	665
Psp124BI	GAGCTC	1 cut(s)	543
Psp6I	CCWGG	2 cut(s)	597, 839
PspGI	CCWGG	2 cut(s)	597, 839
PspLI	CGTACG	1 cut(s)	313
PspN4I	GGNNCC	5 cut(s)	351, 391, 611, 855, 1153
PspPI	GGNCC	2 cut(s)	112, 854
PspXI	VCTCGAGB	1 cut(s)	1011
PsuI	RGATCY	2 cut(s)	349, 645
PvuII	CAGCTG	1 cut(s)	683
RsaI	GTAC	6 cut(s)	315, 333, 469, 792, 1040, 1153
RsaNI	GTAC	6 cut(s)	314, 332, 468, 791, 1039, 1152
RseI	CAYNNNNRTG	1 cut(s)	168
SacI	GAGCTC	1 cut(s)	543
SapI	GCTCTTC	1 cut(s)	90
SaqAI	TTAA	1 cut(s)	665
SatI	GCNGC	2 cut(s)	681, 684
Sau3AI	GATC	7 cut(s)	122, 187, 271, 349, 414, 645, 1107
Sau96I	GGNCC	2 cut(s)	112, 854
SchI	GAGTC	2 cut(s)	752, 1115
ScrFI	CCNGG	2 cut(s)	599, 841
SduI	GDGCHC	2 cut(s)	184, 543
SexAI	ACCWGGT	1 cut(s)	597
SfaNI	GCATC	5 cut(s)	410, 695, 720, 826, 883
Sfr274I	CTCGAG	1 cut(s)	1011
SinI	GGWCC	2 cut(s)	112, 854
SlaI	CTCGAG	1 cut(s)	1011
SmiMI	CAYNNNNRTG	1 cut(s)	168
SmlI	CTYRAG	2 cut(s)	867, 1011
SmoI	CTYRAG	2 cut(s)	867, 1011
SphI	GCATGC	1 cut(s)	848
Sse9I	AATT	7 cut(s)	248, 527, 662, 666, 730, 1044, 1073
SsiI	CCGC	1 cut(s)	1003
SspI	AATATT	1 cut(s)	37
SspMI	CTAG	4 cut(s)	116, 708, 740, 909
SstI	GAGCTC	1 cut(s)	543
StyD4I	CCNGG	2 cut(s)	597, 839
StyI	CCWWGG	1 cut(s)	405
TaaI	ACNGT	3 cut(s)	313, 783, 826
TaiI	ACGT	5 cut(s)	319, 333, 486, 792, 1040
TaqI	TCGA	2 cut(s)	239, 1012
TasI	AATT	7 cut(s)	248, 527, 662, 666, 730, 1044, 1073
Tru1I	TTAA	1 cut(s)	665
Tru9I	TTAA	1 cut(s)	665
TscAI	CASTG	5 cut(s)	79, 541, 696, 831, 1099
TseFI	GTSAC	1 cut(s)	785
TseI	GCWGC	2 cut(s)	680, 683
Tsp45I	GTSAC	1 cut(s)	785
TspDTI	ATGAA	9 cut(s)	152, 293, 435, 540, 850, 1002, 1056, 1075, 1090
TspGWI	ACGGA	1 cut(s)	846
TspRI	CASTG	5 cut(s)	79, 541, 696, 831, 1099
VneI	GTGCAC	1 cut(s)	180
VpaK11BI	GGWCC	2 cut(s)	112, 854
VspI	ATTAAT	1 cut(s)	665
XapI	RAATTY	2 cut(s)	527, 1073
XceI	RCATGY	1 cut(s)	848
XcmI	CCANNNNNNNNNTGG	1 cut(s)	665
XhoI	CTCGAG	1 cut(s)	1011
XspI	CTAG	4 cut(s)	116, 708, 740, 909
Zsp2I	ATGCAT	1 cut(s)	1059

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.