Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0002765

Physical Location & Seq

Genomic Coordinates Reverse (-)

52802251 .. 52805595

Gene Structure 3345 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029990

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGGTTAAGGATATGGACATGGCTGGGGATAGGAGAGAAGATGTTGTGATTGTGGGTGGTGGGATTTCCGGCCTTGCCACTGCTCTTGCTCTCTATAGAAAGGGAATAAGAAGCTTGGTCCTAGAAAAATCAAAGACTTTACAAGCCACCGGAGGTATCATTGTGCATTCTAATGGTTGGCGCGCCCTTGAACAGCTCGGTGTAGCCTCATATCTTAGACAAACTGCTGATCCTATACTATCGGGACAATTCTCTTCACTTGATAATGGTAAGCGAGAAGAAATTCCCATTTGGAAAGAAGAAATGCGATGTGTGAGAAGGACCGATCTGGTTAATATTTTGGCTCAAAATCTGCCACTCGAAACTGTACGTTACGGCTGCAACGTACTTTCGATTGAGCTGGATCCTGTAACATCTTATCCAGTTCTTCAACTTCAAAATGGAACTACATTGAACACCAAGGTTGTGATCGGATGTGACGGAGTAAATTCCAAGATAACCAATCTTATTGGGGTGAAGGCCCCAAATAGACTCAATGTAATGGCAGTAAGAAGCTTTACAATATATCCAAATGGCCACAAATTCGGCAGTGAGTTTAAGATGATAAGAAAAGGTGATGTTACGGTCGGAGTAATACCCATGACCACCAACCAGGTTCATTGGTTCATCACTAGAAAATATTTTTCACAAGAAGGTTTCAAGATCTCCAAAAGTCTGAAATTGATTATGAACTTCTCAACTGAGTCAGTGAAGGATTTTCCTAGTAGCATTAAAGAGATGGTCAACAATTGCTGGCTAGAGTGTTTACATTTCTCAGAGTACATCAAATACCGATCACCATGGAACATACTATGTACACACTTTCGGGTAGGAACAGTGACAGTTGCAGGAGATGCCTTGCATGCAATGACTCCGTTCATTGCTCAGGGTGGCTCAGCCGCTTTGGAAGATGCAGTTGTCCTTGCTAGGTGCTTCGCACGAAAGGCTGTCGTCGGTGGTTCAGGTGAAATAGGAAGCAAACTTATGGTAGAGAAAGCATTTGATGAATACCTAAAAGAGCGGAAAACACGACTTCTAAGACTTACTTTCGAATCAACCCTACTCGGAAAGATGGAAGAAACTTCATCAAAGCTCATCAAGCTCTTATGCATTGTGCTCATAGTGGCCCTATTTCGCAACTCGTTTGCTCACGCTCGCTATGACTGTGGCAAACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_3

Protein Analysis

406

Amino Acids

45.03

Weight (kDa)

9.34

Isoelectric Point (pI)

34.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_3	PF01494	14 - 327	2.9e-26	FAD binding domain
DAO	PF01266	14 - 50	1.3e-07	FAD dependent oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002765)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15760 AT4G15760
fragaria_vesca	FvH4_7g03910
malus_domestica	MD07G1043700.v1.1 MD10G1041900.v1.1 MD10G1042000.v1.1
prunus_persica	Prupe.2G043900_v2.0.a1 Prupe.8G046000_v2.0.a1 Prupe.8G046000_v2.0.a1 Prupe.8G046000_v2.0.a1 Prupe.8G046000_v2.0.a1 Prupe.8G046000_v2.0.a1
pyrus_communis	pycom10g02900 pycom10g02910
rosa_chinensis	RchiOBHm_Chr1g0327481 RchiOBHm_Chr1g0327491 RchiOBHm_Chr2g0087851
rosa_laevigata	RLG00000015907 RLG00000029990
rosa_multiflora	Rmu_sc0003600.1_g000007 Rmu_sc0008385.1_g000017 Rmu_ssc0000042.1_g000053
rosa_roxburghii	Rroxscaffold_2G00151770 Rroxscaffold_2G00153170 Rroxscaffold_4G00322630
rosa_rugosa	Rorug01G0067300 Rorug01G0479000
rosa_samantha	Rh1AG084300 Rh1BG067000 Rh1CG082000 Rh1CG082100 Rh1DG088600 Rh1DG088700 Rh2AG033600 Rh2BG032800 Rh2CG033500 Rh2DG033200
rosa_wichuraiana	Rw1G006630 Rw2G002620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	1060
AccII	CGCG	1 cut(s)	183
AciI	CCGC	2 cut(s)	939, 1060
AclWI	GGATC	3 cut(s)	224, 398, 411
AcoI	YGGCCR	1 cut(s)	574
AcsI	RAATTY	3 cut(s)	282, 487, 581
AfaI	GTAC	4 cut(s)	369, 387, 821, 856
AgsI	TTSAA	5 cut(s)	191, 431, 437, 454, 700
AjnI	CCWGG	1 cut(s)	651
AluBI	AGCT	6 cut(s)	114, 196, 400, 555, 1132, 1141
AluI	AGCT	6 cut(s)	114, 196, 400, 555, 1132, 1141
Alw21I	GWGCWC	1 cut(s)	1158
AlwI	GGATC	3 cut(s)	224, 398, 411
AoxI	GGCC	4 cut(s)	70, 519, 574, 1164
ApeKI	GCWGC	1 cut(s)	378
ApoI	RAATTY	3 cut(s)	282, 487, 581
AscI	GGCGCGCC	1 cut(s)	181
Asp700I	GAANNNNTTC	1 cut(s)	282
AspLEI	GCGC	2 cut(s)	183, 185
AspS9I	GGNCC	4 cut(s)	118, 321, 520, 1165
AsuHPI	GGTGA	4 cut(s)	526, 626, 828, 1016
AsuII	TTCGAA	1 cut(s)	1089
AvaII	GGWCC	2 cut(s)	118, 321
BalI	TGGCCA	1 cut(s)	576
BamHI	GGATCC	1 cut(s)	403
Bbv12I	GWGCWC	1 cut(s)	1158
BbvI	GCAGC	1 cut(s)	365
BccI	CCATC	2 cut(s)	772, 1105
BceAI	ACGGC	1 cut(s)	391
BciT130I	CCWGG	1 cut(s)	653
BfaI	CTAG	5 cut(s)	122, 672, 762, 797, 966
BfmI	CTRYAG	1 cut(s)	94
BglII	AGATCT	1 cut(s)	702
BisI	GCNGC	2 cut(s)	379, 939
BlpI	GCTNAGC	1 cut(s)	934
BlsI	GCNGC	2 cut(s)	380, 940
Bme1390I	CCNGG	1 cut(s)	653
Bme18I	GGWCC	2 cut(s)	118, 321
BmgT120I	GGNCC	4 cut(s)	118, 321, 520, 1165
BmiI	GGNNCC	2 cut(s)	405, 522
BmrFI	CCNGG	1 cut(s)	653
BmsI	GCATC	2 cut(s)	883, 940
Bpu10I	CCTNAGC	1 cut(s)	924
Bpu1102I	GCTNAGC	1 cut(s)	934
Bpu14I	TTCGAA	1 cut(s)	1089
BsaJI	CCNNGG	2 cut(s)	459, 839
BsaWI	WCCGGW	1 cut(s)	149
Bse1I	ACTGG	1 cut(s)	422
Bse3DI	GCAATG	2 cut(s)	912, 918
BseBI	CCWGG	1 cut(s)	653
BseDI	CCNNGG	2 cut(s)	459, 839
BseGI	GGATG	1 cut(s)	479
BseMI	GCAATG	2 cut(s)	912, 918
BseMII	CTCAG	4 cut(s)	732, 828, 938, 948
BseNI	ACTGG	1 cut(s)	422
BsePI	GCGCGC	1 cut(s)	181
BseXI	GCAGC	1 cut(s)	365
BseYI	CCCAGC	1 cut(s)	23
Bsh1236I	CGCG	1 cut(s)	183
Bsh1285I	CGRYCG	1 cut(s)	627
BshFI	GGCC	4 cut(s)	72, 521, 576, 1166
BsiEI	CGRYCG	1 cut(s)	627
BsiHKAI	GWGCWC	1 cut(s)	1158
BsiSI	CCGG	2 cut(s)	69, 150
BslFI	GGGAC	1 cut(s)	258
BsmFI	GGGAC	1 cut(s)	258
BsmI	GAATGC	1 cut(s)	166
BsnI	GGCC	4 cut(s)	72, 521, 576, 1166
Bsp119I	TTCGAA	1 cut(s)	1089
Bsp1286I	GDGCHC	1 cut(s)	1158
Bsp1407I	TGTACA	1 cut(s)	854
Bsp143I	GATC	6 cut(s)	229, 325, 403, 468, 702, 833
Bsp1720I	GCTNAGC	1 cut(s)	934
Bsp19I	CCATGG	1 cut(s)	839
BspACI	CCGC	2 cut(s)	939, 1060
BspANI	GGCC	4 cut(s)	72, 521, 576, 1166
BspCNI	CTCAG	4 cut(s)	733, 827, 937, 947
BspFNI	CGCG	1 cut(s)	183
BspLI	GGNNCC	2 cut(s)	405, 522
BspPI	GGATC	3 cut(s)	224, 398, 411
BspT104I	TTCGAA	1 cut(s)	1089
BsrBI	CCGCTC	1 cut(s)	1060
BsrDI	GCAATG	2 cut(s)	912, 918
BsrGI	TGTACA	1 cut(s)	854
BsrI	ACTGG	1 cut(s)	422
BssECI	CCNNGG	2 cut(s)	459, 839
BssHII	GCGCGC	1 cut(s)	181
BssMI	GATC	6 cut(s)	229, 325, 403, 468, 702, 833
BssT1I	CCWWGG	2 cut(s)	459, 839
Bst2UI	CCWGG	1 cut(s)	653
Bst4CI	ACNGT	5 cut(s)	367, 625, 877, 883, 1205
Bst6I	CTCTTC	1 cut(s)	259
BstAPI	GCANNNNNTGC	1 cut(s)	893
BstAUI	TGTACA	1 cut(s)	854
BstBI	TTCGAA	1 cut(s)	1089
BstC8I	GCNNGC	4 cut(s)	183, 794, 903, 1195
BstDEI	CTNAG	6 cut(s)	215, 741, 814, 924, 934, 1076
BstDSI	CCRYGG	1 cut(s)	839
BstF5I	GGATG	1 cut(s)	479
BstFNI	CGCG	1 cut(s)	183
BstHHI	GCGC	2 cut(s)	183, 185
BstKTI	GATC	6 cut(s)	232, 328, 406, 471, 705, 836
BstMBI	GATC	6 cut(s)	229, 325, 403, 468, 702, 833
BstMCI	CGRYCG	1 cut(s)	627
BstMWI	GCNNNNNNNGC	4 cut(s)	893, 902, 983, 1138
BstNI	CCWGG	1 cut(s)	653
BstNSI	RCATGY	1 cut(s)	905
BstSCI	CCNGG	1 cut(s)	651
BstSFI	CTRYAG	1 cut(s)	94
BstUI	CGCG	1 cut(s)	183
BstV1I	GCAGC	1 cut(s)	365
BstX2I	RGATCY	2 cut(s)	403, 702
BstYI	RGATCY	2 cut(s)	403, 702
BsuRI	GGCC	4 cut(s)	72, 521, 576, 1166
BtgI	CCRYGG	1 cut(s)	839
BtgZI	GCGATG	1 cut(s)	322
BtsCI	GGATG	1 cut(s)	479
BtsI	GCAGTG	2 cut(s)	78, 595
BtsIMutI	CAGTG	4 cut(s)	78, 595, 753, 882
Cac8I	GCNNGC	4 cut(s)	183, 794, 903, 1195
CfoI	GCGC	2 cut(s)	183, 185
Cfr13I	GGNCC	4 cut(s)	118, 321, 520, 1165
CsiI	ACCWGGT	1 cut(s)	651
Csp6I	GTAC	4 cut(s)	368, 386, 820, 855
CspCI	CAANNNNNGTGG	2 cut(s)	67, 102
CviAII	CATG	4 cut(s)	19, 640, 840, 902
CviQI	GTAC	4 cut(s)	368, 386, 820, 855
DdeI	CTNAG	6 cut(s)	215, 741, 814, 924, 934, 1076
DpnI	GATC	6 cut(s)	231, 327, 405, 470, 704, 835
DpnII	GATC	6 cut(s)	229, 325, 403, 468, 702, 833
EaeI	YGGCCR	1 cut(s)	574
Eam1104I	CTCTTC	1 cut(s)	259
EarI	CTCTTC	1 cut(s)	259
Eco130I	CCWWGG	2 cut(s)	459, 839
Eco47I	GGWCC	2 cut(s)	118, 321
EcoO109I	RGGNCCY	1 cut(s)	520
EcoRII	CCWGG	1 cut(s)	651
EcoT14I	CCWWGG	2 cut(s)	459, 839
EcoT22I	ATGCAT	1 cut(s)	1151
ErhI	CCWWGG	2 cut(s)	459, 839
FaeI	CATG	4 cut(s)	22, 643, 843, 905
FalI	AAGNNNNNCTT	2 cut(s)	1069, 1101
FaqI	GGGAC	1 cut(s)	258
FatI	CATG	4 cut(s)	18, 639, 839, 901
Fnu4HI	GCNGC	2 cut(s)	379, 939
FokI	GGATG	1 cut(s)	486
Fsp4HI	GCNGC	2 cut(s)	379, 939
FspBI	CTAG	5 cut(s)	122, 672, 762, 797, 966
GlaI	GCGC	2 cut(s)	182, 184
GluI	GCNGC	2 cut(s)	379, 939
GsaI	CCCAGC	1 cut(s)	27
HaeIII	GGCC	4 cut(s)	72, 521, 576, 1166
HapII	CCGG	2 cut(s)	69, 150
HhaI	GCGC	2 cut(s)	183, 185
Hin1II	CATG	4 cut(s)	22, 643, 843, 905
Hin6I	GCGC	2 cut(s)	181, 183
HinP1I	GCGC	2 cut(s)	181, 183
HincII	GTYRAC	1 cut(s)	784
HindII	GTYRAC	1 cut(s)	784
HindIII	AAGCTT	2 cut(s)	112, 553
HinfI	GANTC	4 cut(s)	531, 743, 910, 1091
HpaII	CCGG	2 cut(s)	69, 150
HphI	GGTGA	4 cut(s)	526, 626, 828, 1016
Hpy166II	GTNNAC	3 cut(s)	784, 806, 857
Hpy188I	TCNGA	5 cut(s)	473, 629, 717, 817, 1106
Hpy188III	TCNNGA	2 cut(s)	243, 700
Hpy8I	GTNNAC	3 cut(s)	784, 806, 857
Hpy99I	CGWCG	1 cut(s)	995
HpyAV	CCTTC	4 cut(s)	312, 511, 686, 745
HpyCH4III	ACNGT	5 cut(s)	367, 625, 877, 883, 1205
HpyCH4IV	ACGT	2 cut(s)	370, 384
HpyCH4V	TGCA	7 cut(s)	166, 381, 887, 901, 905, 953, 1149
HpyF10VI	GCNNNNNNNGC	4 cut(s)	893, 902, 983, 1138
HpyF3I	CTNAG	6 cut(s)	215, 741, 814, 924, 934, 1076
HpySE526I	ACGT	2 cut(s)	370, 384
Hsp92II	CATG	4 cut(s)	22, 643, 843, 905
HspAI	GCGC	2 cut(s)	181, 183
Kzo9I	GATC	6 cut(s)	229, 325, 403, 468, 702, 833
Lsp1109I	GCAGC	1 cut(s)	365
LweI	GCATC	2 cut(s)	883, 940
MabI	ACCWGGT	1 cut(s)	651
MaeI	CTAG	5 cut(s)	122, 672, 762, 797, 966
MaeII	ACGT	2 cut(s)	370, 384
MaeIII	GTNAC	5 cut(s)	371, 409, 476, 619, 877
MalI	GATC	6 cut(s)	231, 327, 405, 470, 704, 835
MbiI	CCGCTC	1 cut(s)	1060
MboI	GATC	6 cut(s)	229, 325, 403, 468, 702, 833
MboII	GAAGA	7 cut(s)	50, 246, 290, 311, 419, 959, 1127
MfeI	CAATTG	1 cut(s)	787
MflI	RGATCY	2 cut(s)	403, 702
MhlI	GDGCHC	1 cut(s)	1158
MlsI	TGGCCA	1 cut(s)	576
MluCI	AATT	6 cut(s)	248, 282, 487, 581, 719, 787
MluNI	TGGCCA	1 cut(s)	576
MlyI	GAGTC	3 cut(s)	525, 752, 904
MmeI	TCCRAC	1 cut(s)	607
MnlI	CCTC	2 cut(s)	146, 217
Mox20I	TGGCCA	1 cut(s)	576
Mph1103I	ATGCAT	1 cut(s)	1151
MroXI	GAANNNNTTC	1 cut(s)	282
MscI	TGGCCA	1 cut(s)	576
MseI	TTAA	4 cut(s)	6, 333, 597, 771
MslI	CAYNNNNRTG	1 cut(s)	171
Msp20I	TGGCCA	1 cut(s)	576
MspI	CCGG	2 cut(s)	69, 150
MspR9I	CCNGG	1 cut(s)	653
MunI	CAATTG	1 cut(s)	787
Mva1269I	GAATGC	1 cut(s)	166
MvaI	CCWGG	1 cut(s)	653
MvnI	CGCG	1 cut(s)	183
MwoI	GCNNNNNNNGC	4 cut(s)	893, 902, 983, 1138
NcoI	CCATGG	1 cut(s)	839
NdeII	GATC	6 cut(s)	229, 325, 403, 468, 702, 833
NlaIII	CATG	4 cut(s)	22, 643, 843, 905
NlaIV	GGNNCC	2 cut(s)	405, 522
NmuCI	GTSAC	2 cut(s)	476, 877
NsiI	ATGCAT	1 cut(s)	1151
NspI	RCATGY	1 cut(s)	905
NspV	TTCGAA	1 cut(s)	1089
PaeI	GCATGC	1 cut(s)	905
PalAI	GGCGCGCC	1 cut(s)	181
PauI	GCGCGC	1 cut(s)	181
PcsI	WCGNNNNNNNCGW	1 cut(s)	381
PctI	GAATGC	1 cut(s)	166
PdmI	GAANNNNTTC	1 cut(s)	282
PfeI	GAWTC	1 cut(s)	1091
PkrI	GCNGC	2 cut(s)	380, 940
PleI	GAGTC	3 cut(s)	525, 751, 904
PpsI	GAGTC	3 cut(s)	525, 751, 904
Psp6I	CCWGG	1 cut(s)	651
PspFI	CCCAGC	1 cut(s)	23
PspGI	CCWGG	1 cut(s)	651
PspN4I	GGNNCC	2 cut(s)	405, 522
PspPI	GGNCC	4 cut(s)	118, 321, 520, 1165
PsuI	RGATCY	2 cut(s)	403, 702
PteI	GCGCGC	1 cut(s)	181
RsaI	GTAC	4 cut(s)	369, 387, 821, 856
RsaNI	GTAC	4 cut(s)	368, 386, 820, 855
RseI	CAYNNNNRTG	1 cut(s)	171
SaqAI	TTAA	4 cut(s)	6, 333, 597, 771
SatI	GCNGC	2 cut(s)	379, 939
Sau3AI	GATC	6 cut(s)	229, 325, 403, 468, 702, 833
Sau96I	GGNCC	4 cut(s)	118, 321, 520, 1165
SchI	GAGTC	3 cut(s)	525, 752, 904
ScrFI	CCNGG	1 cut(s)	653
SduI	GDGCHC	1 cut(s)	1158
SexAI	ACCWGGT	1 cut(s)	651
SfaNI	GCATC	2 cut(s)	883, 940
SfcI	CTRYAG	1 cut(s)	94
SfuI	TTCGAA	1 cut(s)	1089
SgsI	GGCGCGCC	1 cut(s)	181
SinI	GGWCC	2 cut(s)	118, 321
SmiMI	CAYNNNNRTG	1 cut(s)	171
SphI	GCATGC	1 cut(s)	905
Sse9I	AATT	6 cut(s)	248, 282, 487, 581, 719, 787
SsiI	CCGC	2 cut(s)	939, 1060
SspI	AATATT	2 cut(s)	337, 680
SspMI	CTAG	5 cut(s)	122, 672, 762, 797, 966
StyD4I	CCNGG	1 cut(s)	651
StyI	CCWWGG	2 cut(s)	459, 839
TaaI	ACNGT	5 cut(s)	367, 625, 877, 883, 1205
TaiI	ACGT	2 cut(s)	373, 387
TaqI	TCGA	3 cut(s)	360, 392, 1089
TaqII	GACCGA	1 cut(s)	338
TasI	AATT	6 cut(s)	248, 282, 487, 581, 719, 787
TatI	WGTACW	2 cut(s)	819, 854
TauI	GCSGC	1 cut(s)	941
TfiI	GAWTC	1 cut(s)	1091
Tru1I	TTAA	4 cut(s)	6, 333, 597, 771
Tru9I	TTAA	4 cut(s)	6, 333, 597, 771
TscAI	CASTG	4 cut(s)	85, 595, 753, 882
TseFI	GTSAC	2 cut(s)	476, 877
TseI	GCWGC	1 cut(s)	378
Tsp45I	GTSAC	2 cut(s)	476, 877
TspDTI	ATGAA	6 cut(s)	647, 655, 743, 907, 1059, 1113
TspGWI	ACGGA	2 cut(s)	495, 903
TspRI	CASTG	4 cut(s)	85, 595, 753, 882
VpaK11BI	GGWCC	2 cut(s)	118, 321
XapI	RAATTY	3 cut(s)	282, 487, 581
XceI	RCATGY	1 cut(s)	905
XmnI	GAANNNNTTC	1 cut(s)	282
XspI	CTAG	5 cut(s)	122, 672, 762, 797, 966
Zsp2I	ATGCAT	1 cut(s)	1151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.