Rroxscaffold_4G00322630

FAD binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0002765
Physical Location & Seq
Reverse (-)
53059270 .. 53062290
3021 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00322630.1

Sequence Viewer

Length: 1206 bp
ATGGATATGGCAGGGGATACAAGAGAAGATGTTGTGATTGTGGGTGGTGGGATTTCAGGCCTCGCCACTGCTCTTGCTCTTCACAGAAAGGGCATAAGAAGCTTGGTCCTAGAAAAATCAAAGACTTTACAAGTCACTGGAGGTATCGTTGTGCATTCTAATGGTTGGCGTGCCCTTGAACAGCTCGGTGTAGCCTCATATCTTAGACAAACTGCTGATCCTATACTATCGGGACAATTCACTTCACTTGATAAGGGCAAGCCACAAGAAATGCCCATTTCGCAAGAAGAAATGCGATGTGTGAGAAGGACTGATCTGGTTAATATTTTGGCTCAAAACCTGCCACCCAACACTGTACGTTATGGCTCCAACGTACTTTCTATTGAGTTGGATCCTGTGACATCTTATCCAGTTCTTCAACTTCAAAATGGAACTAGTTTAAACGCCAAGGTTGTGATCGGATGCGACGGAGTGAACTCCAAGATAACAAATCTGATTGGGGTGAAGGCCCCAAATAGACTCAACGTCATGGCAGTAAGAAGCATTACAATATATCCAAATGGCCATAAATTCGGCAGTGAGTTTAAGATGATAAAAAAAGGTGATGTTACGGTTGGAGTAATACCCATGACCACCAACCAGGTTTATTGGTTCATCACTGGAAAATATTTTTCACAAGAAGGTTTCAAGATCTCCAAAAGTTCGAAATTGATTATGAACTTCTCAACTGAGTTAGTGAAGGATTTTCCTAGTAGCATTAAAGAAATGGTCAACAATTGCTGGCTAGAGTATTTACATTTCTCAGAGTACATCAAATACCGATCACCATGGAACATACTATGTACACACTTTCGGGTAGGAACAGTGACAGTTGCAGGAGATGCCTTGCATGCAATGACTCCGTTCATTGCTCAGGGTGGCTCAGCCGCTTTGGAAGACGCAGTTGTCCTTGCTAGGTGCTTCGCACGAAAGGCTGTCGTCGGTGGTCGAGGTGAAATAGGAAGCAAACTTATGGTAGAGAAAGCATTTGATGAATACCTAAAAGAGCGGAAAACACGGCTTCTAAGACTTACTATCGAATCAACCCTACTCGGAAAGTCGGAAGAAACTTCAACAAAGCTCATCAAGCTCTTATATATTGTGCTCATGGTGGTCCTATTTCGCAACTCGTTTGCTCACGCTCGCTATGACTGTGGCAAACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3

Protein Analysis

401

Amino Acids

44.32

Weight (kDa)

9.44

Isoelectric Point (pI)

31.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 10 - 323 7.3e-29 FAD binding domain
DAO PF01266 10 - 42 3.1e-07 FAD dependent oxidoreductase
Lycopene_cycl PF05834 10 - 161 2.6e-07 Lycopene cyclase protein
FAD_binding_2 PF00890 10 - 43 7.3e-06 FAD binding domain
NAD_binding_8 PF13450 13 - 43 4.3e-06 NAD(P)-binding Rossmann-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 944
Acc36I ACCTGC 1 cut(s) 348
AccBSI CCGCTC 1 cut(s) 1048
AciI CCGC 2 cut(s) 927, 1048
AclWI GGATC 3 cut(s) 212, 386, 399
AcoI YGGCCR 1 cut(s) 562
AcsI RAATTY 1 cut(s) 569
AfaI GTAC 4 cut(s) 357, 375, 809, 844
AgsI TTSAA 5 cut(s) 179, 419, 425, 688, 1113
AhdI GACNNNNNGTC 1 cut(s) 524
AhlI ACTAGT 1 cut(s) 434
AjnI CCWGG 1 cut(s) 639
AluBI AGCT 4 cut(s) 102, 184, 1120, 1129
AluI AGCT 4 cut(s) 102, 184, 1120, 1129
Alw21I GWGCWC 1 cut(s) 1146
AlwI GGATC 3 cut(s) 212, 386, 399
AoxI GGCC 3 cut(s) 58, 507, 562
ApoI RAATTY 1 cut(s) 569
AspS9I GGNCC 3 cut(s) 106, 508, 1153
AsuHPI GGTGA 4 cut(s) 514, 614, 816, 1004
AsuII TTCGAA 1 cut(s) 704
AvaII GGWCC 2 cut(s) 106, 1153
BaeGI GKGCMC 1 cut(s) 175
BalI TGGCCA 1 cut(s) 564
BamHI GGATCC 1 cut(s) 391
BbsI GAAGAC 1 cut(s) 942
Bbv12I GWGCWC 1 cut(s) 1146
BceAI ACGGC 1 cut(s) 1073
BciT130I CCWGG 1 cut(s) 641
BciVI GTATCC 1 cut(s) 10
BcuI ACTAGT 1 cut(s) 434
BfaI CTAG 5 cut(s) 110, 435, 750, 785, 954
BfuAI ACCTGC 1 cut(s) 348
BfuI GTATCC 1 cut(s) 10
BglII AGATCT 1 cut(s) 690
BisI GCNGC 1 cut(s) 927
BlpI GCTNAGC 1 cut(s) 922
BlsI GCNGC 1 cut(s) 928
Bme1390I CCNGG 1 cut(s) 641
Bme18I GGWCC 2 cut(s) 106, 1153
BmeRI GACNNNNNGTC 1 cut(s) 524
BmgT120I GGNCC 3 cut(s) 106, 508, 1153
BmiI GGNNCC 3 cut(s) 367, 393, 510
BmrFI CCNGG 1 cut(s) 641
BmsI GCATC 2 cut(s) 452, 871
BpiI GAAGAC 1 cut(s) 942
BpmI CTGGAG 1 cut(s) 159
Bpu10I CCTNAGC 1 cut(s) 912
Bpu1102I GCTNAGC 1 cut(s) 922
Bpu14I TTCGAA 1 cut(s) 704
BsaJI CCNNGG 2 cut(s) 447, 827
BsaXI ACNNNNNCTCC 2 cut(s) 132, 162
Bse1I ACTGG 3 cut(s) 142, 410, 664
Bse3DI GCAATG 2 cut(s) 900, 906
BseBI CCWGG 1 cut(s) 641
BseDI CCNNGG 2 cut(s) 447, 827
BseGI GGATG 1 cut(s) 467
BseMI GCAATG 2 cut(s) 900, 906
BseMII CTCAG 4 cut(s) 720, 816, 926, 936
BseNI ACTGG 3 cut(s) 142, 410, 664
BseSI GKGCMC 1 cut(s) 175
BshFI GGCC 3 cut(s) 60, 509, 564
BsiHKAI GWGCWC 1 cut(s) 1146
BslFI GGGAC 1 cut(s) 246
BsmFI GGGAC 1 cut(s) 246
BsmI GAATGC 1 cut(s) 154
BsnI GGCC 3 cut(s) 60, 509, 564
Bsp119I TTCGAA 1 cut(s) 704
Bsp1286I GDGCHC 2 cut(s) 175, 1146
Bsp1407I TGTACA 1 cut(s) 842
Bsp143I GATC 6 cut(s) 217, 313, 391, 456, 690, 821
Bsp1720I GCTNAGC 1 cut(s) 922
Bsp19I CCATGG 1 cut(s) 827
BspACI CCGC 2 cut(s) 927, 1048
BspANI GGCC 3 cut(s) 60, 509, 564
BspCNI CTCAG 4 cut(s) 721, 815, 925, 935
BspLI GGNNCC 3 cut(s) 367, 393, 510
BspMI ACCTGC 1 cut(s) 348
BspPI GGATC 3 cut(s) 212, 386, 399
BspQI GCTCTTC 1 cut(s) 84
BspT104I TTCGAA 1 cut(s) 704
BsrBI CCGCTC 1 cut(s) 1048
BsrDI GCAATG 2 cut(s) 900, 906
BsrGI TGTACA 1 cut(s) 842
BsrI ACTGG 3 cut(s) 142, 410, 664
BssECI CCNNGG 2 cut(s) 447, 827
BssMI GATC 6 cut(s) 217, 313, 391, 456, 690, 821
BssT1I CCWWGG 2 cut(s) 447, 827
Bst2UI CCWGG 1 cut(s) 641
Bst4CI ACNGT 5 cut(s) 355, 613, 865, 871, 1193
Bst6I CTCTTC 1 cut(s) 84
BstAPI GCANNNNNTGC 1 cut(s) 881
BstAUI TGTACA 1 cut(s) 842
BstBI TTCGAA 1 cut(s) 704
BstC8I GCNNGC 5 cut(s) 171, 260, 782, 891, 1183
BstDEI CTNAG 6 cut(s) 203, 729, 802, 912, 922, 1064
BstDSI CCRYGG 1 cut(s) 827
BstF5I GGATG 1 cut(s) 467
BstKTI GATC 6 cut(s) 220, 316, 394, 459, 693, 824
BstMBI GATC 6 cut(s) 217, 313, 391, 456, 690, 821
BstMWI GCNNNNNNNGC 6 cut(s) 99, 280, 881, 890, 971, 1126
BstNI CCWGG 1 cut(s) 641
BstNSI RCATGY 1 cut(s) 893
BstSCI CCNGG 1 cut(s) 639
BstSLI GKGCMC 1 cut(s) 175
BstV2I GAAGAC 1 cut(s) 942
BstX2I RGATCY 2 cut(s) 391, 690
BstYI RGATCY 2 cut(s) 391, 690
BsuI GTATCC 1 cut(s) 10
BsuRI GGCC 3 cut(s) 60, 509, 564
BtgI CCRYGG 1 cut(s) 827
BtgZI GCGATG 1 cut(s) 310
BtsCI GGATG 1 cut(s) 467
BtsI GCAGTG 2 cut(s) 66, 583
BtsIMutI CAGTG 6 cut(s) 66, 135, 351, 583, 657, 870
BveI ACCTGC 1 cut(s) 348
Cac8I GCNNGC 5 cut(s) 171, 260, 782, 891, 1183
Cfr13I GGNCC 3 cut(s) 106, 508, 1153
CseI GACGC 1 cut(s) 947
CsiI ACCWGGT 1 cut(s) 639
Csp6I GTAC 4 cut(s) 356, 374, 808, 843
CspCI CAANNNNNGTGG 2 cut(s) 55, 90
CviAII CATG 5 cut(s) 529, 628, 828, 890, 1147
CviQI GTAC 4 cut(s) 356, 374, 808, 843
DdeI CTNAG 6 cut(s) 203, 729, 802, 912, 922, 1064
DpnI GATC 6 cut(s) 219, 315, 393, 458, 692, 823
DpnII GATC 6 cut(s) 217, 313, 391, 456, 690, 821
DraI TTTAAA 1 cut(s) 441
DrdI GACNNNNNNGTC 1 cut(s) 944
DriI GACNNNNNGTC 1 cut(s) 524
DseDI GACNNNNNNGTC 1 cut(s) 944
EaeI YGGCCR 1 cut(s) 562
Eam1104I CTCTTC 1 cut(s) 84
Eam1105I GACNNNNNGTC 1 cut(s) 524
EarI CTCTTC 1 cut(s) 84
Eco130I CCWWGG 2 cut(s) 447, 827
Eco147I AGGCCT 1 cut(s) 60
Eco47I GGWCC 2 cut(s) 106, 1153
EcoO109I RGGNCCY 1 cut(s) 508
EcoRII CCWGG 1 cut(s) 639
EcoT14I CCWWGG 2 cut(s) 447, 827
ErhI CCWWGG 2 cut(s) 447, 827
FaeI CATG 5 cut(s) 532, 631, 831, 893, 1150
FaqI GGGAC 1 cut(s) 246
FatI CATG 5 cut(s) 528, 627, 827, 889, 1146
Fnu4HI GCNGC 1 cut(s) 927
FokI GGATG 1 cut(s) 474
Fsp4HI GCNGC 1 cut(s) 927
FspBI CTAG 5 cut(s) 110, 435, 750, 785, 954
GluI GCNGC 1 cut(s) 927
GsuI CTGGAG 1 cut(s) 159
HaeIII GGCC 3 cut(s) 60, 509, 564
HgaI GACGC 1 cut(s) 947
Hin1II CATG 5 cut(s) 532, 631, 831, 893, 1150
HincII GTYRAC 1 cut(s) 772
HindII GTYRAC 1 cut(s) 772
HindIII AAGCTT 1 cut(s) 100
HinfI GANTC 3 cut(s) 519, 898, 1079
HphI GGTGA 4 cut(s) 514, 614, 816, 1004
Hpy166II GTNNAC 3 cut(s) 475, 772, 845
Hpy188I TCNGA 5 cut(s) 461, 495, 805, 1094, 1102
Hpy188III TCNNGA 2 cut(s) 231, 688
Hpy8I GTNNAC 3 cut(s) 475, 772, 845
Hpy99I CGWCG 2 cut(s) 470, 983
HpyAV CCTTC 4 cut(s) 300, 499, 674, 733
HpyCH4III ACNGT 5 cut(s) 355, 613, 865, 871, 1193
HpyCH4IV ACGT 3 cut(s) 358, 372, 525
HpyCH4V TGCA 4 cut(s) 154, 875, 889, 893
HpyF10VI GCNNNNNNNGC 6 cut(s) 99, 280, 881, 890, 971, 1126
HpyF3I CTNAG 6 cut(s) 203, 729, 802, 912, 922, 1064
HpySE526I ACGT 3 cut(s) 358, 372, 525
Hsp92II CATG 5 cut(s) 532, 631, 831, 893, 1150
Kzo9I GATC 6 cut(s) 217, 313, 391, 456, 690, 821
LguI GCTCTTC 1 cut(s) 84
LmnI GCTCC 1 cut(s) 371
LweI GCATC 2 cut(s) 452, 871
MabI ACCWGGT 1 cut(s) 639
MaeI CTAG 5 cut(s) 110, 435, 750, 785, 954
MaeII ACGT 3 cut(s) 358, 372, 525
MaeIII GTNAC 4 cut(s) 133, 397, 607, 865
MalI GATC 6 cut(s) 219, 315, 393, 458, 692, 823
MbiI CCGCTC 1 cut(s) 1048
MboI GATC 6 cut(s) 217, 313, 391, 456, 690, 821
MboII GAAGA 6 cut(s) 38, 71, 299, 407, 947, 1115
MfeI CAATTG 1 cut(s) 775
MflI RGATCY 2 cut(s) 391, 690
MhlI GDGCHC 2 cut(s) 175, 1146
MlsI TGGCCA 1 cut(s) 564
MluCI AATT 4 cut(s) 236, 569, 707, 775
MluNI TGGCCA 1 cut(s) 564
MlyI GAGTC 2 cut(s) 513, 892
MmeI TCCRAC 4 cut(s) 369, 393, 595, 1080
MnlI CCTC 4 cut(s) 71, 134, 205, 983
Mox20I TGGCCA 1 cut(s) 564
MscI TGGCCA 1 cut(s) 564
MseI TTAA 4 cut(s) 321, 440, 585, 759
MslI CAYNNNNRTG 1 cut(s) 159
Msp20I TGGCCA 1 cut(s) 564
MspR9I CCNGG 1 cut(s) 641
MssI GTTTAAAC 1 cut(s) 441
MunI CAATTG 1 cut(s) 775
Mva1269I GAATGC 1 cut(s) 154
MvaI CCWGG 1 cut(s) 641
MwoI GCNNNNNNNGC 6 cut(s) 99, 280, 881, 890, 971, 1126
NcoI CCATGG 1 cut(s) 827
NdeII GATC 6 cut(s) 217, 313, 391, 456, 690, 821
NlaIII CATG 5 cut(s) 532, 631, 831, 893, 1150
NlaIV GGNNCC 3 cut(s) 367, 393, 510
NmuCI GTSAC 3 cut(s) 133, 397, 865
NspI RCATGY 1 cut(s) 893
NspV TTCGAA 1 cut(s) 704
PaeI GCATGC 1 cut(s) 893
PceI AGGCCT 1 cut(s) 60
PciSI GCTCTTC 1 cut(s) 84
PctI GAATGC 1 cut(s) 154
PfeI GAWTC 1 cut(s) 1079
PkrI GCNGC 1 cut(s) 928
PleI GAGTC 2 cut(s) 513, 892
PmeI GTTTAAAC 1 cut(s) 441
PpsI GAGTC 2 cut(s) 513, 892
Psp6I CCWGG 1 cut(s) 639
PspGI CCWGG 1 cut(s) 639
PspN4I GGNNCC 3 cut(s) 367, 393, 510
PspPI GGNCC 3 cut(s) 106, 508, 1153
PsuI RGATCY 2 cut(s) 391, 690
RsaI GTAC 4 cut(s) 357, 375, 809, 844
RsaNI GTAC 4 cut(s) 356, 374, 808, 843
RseI CAYNNNNRTG 1 cut(s) 159
SapI GCTCTTC 1 cut(s) 84
SaqAI TTAA 4 cut(s) 321, 440, 585, 759
SatI GCNGC 1 cut(s) 927
Sau3AI GATC 6 cut(s) 217, 313, 391, 456, 690, 821
Sau96I GGNCC 3 cut(s) 106, 508, 1153
SchI GAGTC 2 cut(s) 513, 892
ScrFI CCNGG 1 cut(s) 641
SduI GDGCHC 2 cut(s) 175, 1146
SexAI ACCWGGT 1 cut(s) 639
SfaNI GCATC 2 cut(s) 452, 871
SfuI TTCGAA 1 cut(s) 704
SinI GGWCC 2 cut(s) 106, 1153
SmiMI CAYNNNNRTG 1 cut(s) 159
SpeI ACTAGT 1 cut(s) 434
SphI GCATGC 1 cut(s) 893
Sse9I AATT 4 cut(s) 236, 569, 707, 775
SseBI AGGCCT 1 cut(s) 60
SsiI CCGC 2 cut(s) 927, 1048
SspI AATATT 2 cut(s) 325, 668
SspMI CTAG 5 cut(s) 110, 435, 750, 785, 954
StuI AGGCCT 1 cut(s) 60
StyD4I CCNGG 1 cut(s) 639
StyI CCWWGG 2 cut(s) 447, 827
TaaI ACNGT 5 cut(s) 355, 613, 865, 871, 1193
TaiI ACGT 3 cut(s) 361, 375, 528
TaqI TCGA 3 cut(s) 704, 988, 1077
TasI AATT 4 cut(s) 236, 569, 707, 775
TatI WGTACW 2 cut(s) 807, 842
TauI GCSGC 1 cut(s) 929
TfiI GAWTC 1 cut(s) 1079
Tru1I TTAA 4 cut(s) 321, 440, 585, 759
Tru9I TTAA 4 cut(s) 321, 440, 585, 759
TscAI CASTG 6 cut(s) 73, 142, 358, 583, 664, 870
TseFI GTSAC 3 cut(s) 133, 397, 865
Tsp45I GTSAC 3 cut(s) 133, 397, 865
TspDTI ATGAA 4 cut(s) 643, 731, 895, 1047
TspGWI ACGGA 2 cut(s) 483, 891
TspRI CASTG 6 cut(s) 73, 142, 358, 583, 664, 870
VpaK11BI GGWCC 2 cut(s) 106, 1153
XapI RAATTY 1 cut(s) 569
XceI RCATGY 1 cut(s) 893
XspI CTAG 5 cut(s) 110, 435, 750, 785, 954
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.