Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0002765

Physical Location & Seq

Genomic Coordinates Reverse (-)

3228260 .. 3229376

Gene Structure 1117 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g02900.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGAAATACTGTCATGTCAATAGAGGTTGGGAAGCACGATGCTTGAAACGGAGTGATCTGATCGCAACACTAGCAGAGAGCTTGCCAGTTGGTACCATACGCCTTGGATGCCAAGCAATATCGGTAAAGTTGGACTCCTTAACTTCCCATCCAACTCTTCAACTCCACAACGGAAGCACCATCAAAGCCAAGGTTTTGATCGGATGTGATGGAACAAAATCAGTTGTCGCAGATTTCGTCGGTGTAAAACCATCAAGGCCGTTCATGTTAGCGGGGGTTAGAGGTTTTACAGTTTACCCAGGTGGTCATAATTTTGGAAACGAGTTAGTAATGGTTAAGGGTGACAAGAAGACAATTGGAAGAATTCCAGTTCATGATAACTTGGTCTCCTGGTTCGTCACTCACCAAGTTCATGGCAGACAAGATCCATCGGAGGTTTCGAAGGATCCAGAGCTCATTCGACAACTGACATTACAGTTAATCGAAGAATTTCCTTCAGAAATGGTAGACATGATAAGAAAGAGTGACCTAGAATCAGTATCTCACGTGCTCTTGAGATATCGTCCGCCATGGGAGATACTGGTAGAAAAATTTCGAAGGGGAAGCGTGACGGTGGCTGGAGATGCCATGCATGTAATGGGGCCCTTCCTCGGGCAGGGAGGCTCCGCAGGCATCGAAGACGCCATTGTCATTGCTAGAAGCTTGGCTCCGACATTGGCCAAAAATTACGATAGAAGATCGAGCGGAAGGAATGGAATGATGGTCGAAGTGGGAGAGGCTCTCGACAAGTATGTGAAAGAGAGAAGGATGAGACTGGTGATGCTCTCTGCACAAACTTATCTACTTGGTTTGCTGCAACAAAATCCAGGGCCGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0012505 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051704 GO:0051707

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_3

Protein Analysis

293

Amino Acids

32.27

Weight (kDa)

9.37

Isoelectric Point (pI)

44.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002765)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15760 AT4G15760
fragaria_vesca	FvH4_7g03910
malus_domestica	MD07G1043700.v1.1 MD10G1041900.v1.1 MD10G1042000.v1.1
prunus_persica	Prupe.2G043900_v2.0.a1 Prupe.8G046000_v2.0.a1 Prupe.8G046000_v2.0.a1 Prupe.8G046000_v2.0.a1 Prupe.8G046000_v2.0.a1 Prupe.8G046000_v2.0.a1
pyrus_communis	pycom10g02900 pycom10g02910
rosa_chinensis	RchiOBHm_Chr1g0327481 RchiOBHm_Chr1g0327491 RchiOBHm_Chr2g0087851
rosa_laevigata	RLG00000015907 RLG00000029990
rosa_multiflora	Rmu_sc0003600.1_g000007 Rmu_sc0008385.1_g000017 Rmu_ssc0000042.1_g000053
rosa_roxburghii	Rroxscaffold_2G00151770 Rroxscaffold_2G00153170 Rroxscaffold_4G00322630
rosa_rugosa	Rorug01G0067300 Rorug01G0479000
rosa_samantha	Rh1AG084300 Rh1BG067000 Rh1CG082000 Rh1CG082100 Rh1DG088600 Rh1DG088700 Rh2AG033600 Rh2BG032800 Rh2CG033500 Rh2DG033200
rosa_wichuraiana	Rw1G006630 Rw2G002620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	686
Acc65I	GGTACC	1 cut(s)	92
AccB1I	GGYRCC	1 cut(s)	92
AccBSI	CCGCTC	1 cut(s)	744
AccI	GTMKAC	1 cut(s)	507
AciI	CCGC	4 cut(s)	272, 566, 666, 744
AclWI	GGATC	3 cut(s)	419, 440, 453
AcoI	YGGCCR	1 cut(s)	717
AcsI	RAATTY	3 cut(s)	363, 488, 590
AcuI	CTGAAG	1 cut(s)	480
AcvI	CACGTG	1 cut(s)	547
AcyI	GRCGYC	1 cut(s)	681
AfaI	GTAC	1 cut(s)	94
AfiI	CCNNNNNNNGG	3 cut(s)	650, 651, 655
AgsI	TTSAA	2 cut(s)	46, 161
AjnI	CCWGG	3 cut(s)	298, 389, 865
AluBI	AGCT	3 cut(s)	81, 454, 702
AluI	AGCT	3 cut(s)	81, 454, 702
Alw21I	GWGCWC	2 cut(s)	456, 552
Alw26I	GTCTC	2 cut(s)	391, 805
AlwI	GGATC	3 cut(s)	419, 440, 453
Ama87I	CYCGRG	1 cut(s)	650
AoxI	GGCC	4 cut(s)	257, 641, 717, 869
ApaI	GGGCCC	1 cut(s)	645
ApeKI	GCWGC	1 cut(s)	853
ApoI	RAATTY	3 cut(s)	363, 488, 590
Asp700I	GAANNNNTTC	2 cut(s)	489, 591
Asp718I	GGTACC	1 cut(s)	92
AspS9I	GGNCC	3 cut(s)	641, 642, 869
AsuHPI	GGTGA	3 cut(s)	353, 395, 829
AsuII	TTCGAA	2 cut(s)	440, 595
AvaI	CYCGRG	1 cut(s)	650
BaeGI	GKGCMC	1 cut(s)	645
BalI	TGGCCA	1 cut(s)	719
BamHI	GGATCC	1 cut(s)	445
BanI	GGYRCC	1 cut(s)	92
BanII	GRGCYC	2 cut(s)	456, 645
BbrPI	CACGTG	1 cut(s)	547
BbsI	GAAGAC	2 cut(s)	356, 684
Bbv12I	GWGCWC	2 cut(s)	456, 552
BbvI	GCAGC	1 cut(s)	840
BccI	CCATC	6 cut(s)	156, 188, 203, 259, 436, 754
BceAI	ACGGC	1 cut(s)	244
BciT130I	CCWGG	3 cut(s)	300, 391, 867
BcoDI	GTCTC	2 cut(s)	391, 805
BfaI	CTAG	3 cut(s)	71, 530, 696
BisI	GCNGC	1 cut(s)	854
BlsI	GCNGC	1 cut(s)	855
Bme1390I	CCNGG	3 cut(s)	300, 391, 867
BmeT110I	CYCGRG	1 cut(s)	650
BmgT120I	GGNCC	3 cut(s)	641, 642, 869
BmiI	GGNNCC	6 cut(s)	94, 447, 642, 643, 664, 708
BmrFI	CCNGG	3 cut(s)	300, 391, 867
BmsI	GCATC	5 cut(s)	29, 98, 613, 681, 810
BpiI	GAAGAC	2 cut(s)	356, 684
BplI	GAGNNNNNCTC	2 cut(s)	765, 797
BpmI	CTGGAG	1 cut(s)	639
Bpu14I	TTCGAA	2 cut(s)	440, 595
BpuEI	CTTGAG	1 cut(s)	574
BsaAI	YACGTR	1 cut(s)	547
BsaHI	GRCGYC	1 cut(s)	681
BsaI	GGTCTC	1 cut(s)	391
BsaJI	CCNNGG	6 cut(s)	103, 189, 298, 569, 649, 866
BsaXI	ACNNNNNCTCC	2 cut(s)	371, 401
Bsc4I	CCNNNNNNNGG	3 cut(s)	650, 651, 655
Bse1I	ACTGG	4 cut(s)	86, 368, 585, 819
Bse3DI	GCAATG	1 cut(s)	690
BseBI	CCWGG	3 cut(s)	300, 391, 867
BseDI	CCNNGG	6 cut(s)	103, 189, 298, 569, 649, 866
BseGI	GGATG	4 cut(s)	113, 148, 209, 813
BseLI	CCNNNNNNNGG	3 cut(s)	650, 651, 655
BseMI	GCAATG	1 cut(s)	690
BseNI	ACTGG	4 cut(s)	86, 368, 585, 819
BseSI	GKGCMC	1 cut(s)	645
BseXI	GCAGC	1 cut(s)	840
BsgI	GTGCAG	1 cut(s)	813
BshFI	GGCC	4 cut(s)	259, 643, 719, 871
BshNI	GGYRCC	1 cut(s)	92
BsiHKAI	GWGCWC	2 cut(s)	456, 552
BsiHKCI	CYCGRG	1 cut(s)	650
BslI	CCNNNNNNNGG	3 cut(s)	650, 651, 655
BsmAI	GTCTC	2 cut(s)	391, 805
BsnI	GGCC	4 cut(s)	259, 643, 719, 871
Bso31I	GGTCTC	1 cut(s)	391
BsoBI	CYCGRG	1 cut(s)	650
Bsp119I	TTCGAA	2 cut(s)	440, 595
Bsp120I	GGGCCC	1 cut(s)	641
Bsp1286I	GDGCHC	3 cut(s)	456, 552, 645
Bsp143I	GATC	6 cut(s)	55, 60, 198, 424, 445, 737
Bsp19I	CCATGG	1 cut(s)	569
BspACI	CCGC	4 cut(s)	272, 566, 666, 744
BspANI	GGCC	4 cut(s)	259, 643, 719, 871
BspHI	TCATGA	1 cut(s)	373
BspLI	GGNNCC	6 cut(s)	94, 447, 642, 643, 664, 708
BspPI	GGATC	3 cut(s)	419, 440, 453
BspT104I	TTCGAA	2 cut(s)	440, 595
BspT107I	GGYRCC	1 cut(s)	92
BspTNI	GGTCTC	1 cut(s)	391
BsrBI	CCGCTC	1 cut(s)	744
BsrDI	GCAATG	1 cut(s)	690
BsrI	ACTGG	4 cut(s)	86, 368, 585, 819
BssECI	CCNNGG	6 cut(s)	103, 189, 298, 569, 649, 866
BssMI	GATC	6 cut(s)	55, 60, 198, 424, 445, 737
BssNI	GRCGYC	1 cut(s)	681
BssT1I	CCWWGG	3 cut(s)	103, 189, 569
Bst2UI	CCWGG	3 cut(s)	300, 391, 867
Bst4CI	ACNGT	4 cut(s)	11, 292, 477, 613
Bst6I	CTCTTC	1 cut(s)	162
BstACI	GRCGYC	1 cut(s)	681
BstBAI	YACGTR	1 cut(s)	547
BstBI	TTCGAA	2 cut(s)	440, 595
BstC8I	GCNNGC	2 cut(s)	83, 670
BstDSI	CCRYGG	1 cut(s)	569
BstENI	CCTNNNNNAGG	1 cut(s)	653
BstF5I	GGATG	4 cut(s)	113, 148, 209, 813
BstKTI	GATC	6 cut(s)	58, 63, 201, 427, 448, 740
BstMAI	GTCTC	2 cut(s)	391, 805
BstMBI	GATC	6 cut(s)	55, 60, 198, 424, 445, 737
BstMWI	GCNNNNNNNGC	4 cut(s)	71, 108, 623, 669
BstNI	CCWGG	3 cut(s)	300, 391, 867
BstNSI	RCATGY	1 cut(s)	635
BstSCI	CCNGG	3 cut(s)	298, 389, 865
BstSLI	GKGCMC	1 cut(s)	645
BstV1I	GCAGC	1 cut(s)	840
BstV2I	GAAGAC	2 cut(s)	356, 684
BstX2I	RGATCY	2 cut(s)	424, 445
BstXI	CCANNNNNNTGG	1 cut(s)	413
BstYI	RGATCY	2 cut(s)	424, 445
BsuRI	GGCC	4 cut(s)	259, 643, 719, 871
BtgI	CCRYGG	1 cut(s)	569
BtsCI	GGATG	4 cut(s)	113, 148, 209, 813
Cac8I	GCNNGC	2 cut(s)	83, 670
CciI	TCATGA	1 cut(s)	373
Cfr13I	GGNCC	3 cut(s)	641, 642, 869
CseI	GACGC	1 cut(s)	689
Csp6I	GTAC	1 cut(s)	93
CviAII	CATG	8 cut(s)	14, 265, 374, 413, 511, 570, 628, 632
CviQI	GTAC	1 cut(s)	93
DpnI	GATC	6 cut(s)	57, 62, 200, 426, 447, 739
DpnII	GATC	6 cut(s)	55, 60, 198, 424, 445, 737
DrdI	GACNNNNNNGTC	1 cut(s)	686
DseDI	GACNNNNNNGTC	1 cut(s)	686
EaeI	YGGCCR	1 cut(s)	717
Eam1104I	CTCTTC	1 cut(s)	162
EarI	CTCTTC	1 cut(s)	162
EciI	GGCGGA	1 cut(s)	555
Ecl136II	GAGCTC	1 cut(s)	454
Eco130I	CCWWGG	3 cut(s)	103, 189, 569
Eco24I	GRGCYC	2 cut(s)	456, 645
Eco31I	GGTCTC	1 cut(s)	391
Eco32I	GATATC	1 cut(s)	560
Eco53kI	GAGCTC	1 cut(s)	454
Eco57I	CTGAAG	1 cut(s)	480
Eco72I	CACGTG	1 cut(s)	547
Eco88I	CYCGRG	1 cut(s)	650
EcoICRI	GAGCTC	1 cut(s)	454
EcoNI	CCTNNNNNAGG	1 cut(s)	653
EcoO109I	RGGNCCY	2 cut(s)	641, 642
EcoRI	GAATTC	1 cut(s)	363
EcoRII	CCWGG	3 cut(s)	298, 389, 865
EcoRV	GATATC	1 cut(s)	560
EcoT14I	CCWWGG	3 cut(s)	103, 189, 569
EcoT22I	ATGCAT	1 cut(s)	633
EcoT38I	GRGCYC	2 cut(s)	456, 645
ErhI	CCWWGG	3 cut(s)	103, 189, 569
FaeI	CATG	8 cut(s)	17, 268, 377, 416, 514, 573, 631, 635
FatI	CATG	8 cut(s)	13, 264, 373, 412, 510, 569, 627, 631
FauI	CCCGC	1 cut(s)	265
FblI	GTMKAC	1 cut(s)	507
Fnu4HI	GCNGC	1 cut(s)	854
FokI	GGATG	4 cut(s)	120, 135, 216, 820
FriOI	GRGCYC	2 cut(s)	456, 645
Fsp4HI	GCNGC	1 cut(s)	854
FspBI	CTAG	3 cut(s)	71, 530, 696
GluI	GCNGC	1 cut(s)	854
GsuI	CTGGAG	1 cut(s)	639
HaeIII	GGCC	4 cut(s)	259, 643, 719, 871
HgaI	GACGC	1 cut(s)	689
Hin1I	GRCGYC	1 cut(s)	681
Hin1II	CATG	8 cut(s)	17, 268, 377, 416, 514, 573, 631, 635
HindIII	AAGCTT	1 cut(s)	700
HinfI	GANTC	2 cut(s)	134, 533
HphI	GGTGA	3 cut(s)	353, 395, 829
Hpy166II	GTNNAC	2 cut(s)	295, 508
Hpy188I	TCNGA	5 cut(s)	60, 203, 433, 499, 711
Hpy188III	TCNNGA	4 cut(s)	374, 449, 553, 782
Hpy8I	GTNNAC	2 cut(s)	295, 508
Hpy99I	CGWCG	1 cut(s)	242
HpyAV	CCTTC	6 cut(s)	436, 504, 591, 655, 741, 798
HpyCH4III	ACNGT	4 cut(s)	11, 292, 477, 613
HpyCH4IV	ACGT	1 cut(s)	546
HpyCH4V	TGCA	3 cut(s)	631, 830, 856
HpyF10VI	GCNNNNNNNGC	4 cut(s)	71, 108, 623, 669
HpySE526I	ACGT	1 cut(s)	546
Hsp92I	GRCGYC	1 cut(s)	681
Hsp92II	CATG	8 cut(s)	17, 268, 377, 416, 514, 573, 631, 635
KpnI	GGTACC	1 cut(s)	96
Kzo9I	GATC	6 cut(s)	55, 60, 198, 424, 445, 737
LmnI	GCTCC	2 cut(s)	668, 712
Lsp1109I	GCAGC	1 cut(s)	840
LweI	GCATC	5 cut(s)	29, 98, 613, 681, 810
MaeI	CTAG	3 cut(s)	71, 530, 696
MaeII	ACGT	1 cut(s)	546
MaeIII	GTNAC	4 cut(s)	341, 397, 524, 607
MalI	GATC	6 cut(s)	57, 62, 200, 426, 447, 739
MbiI	CCGCTC	1 cut(s)	744
MboI	GATC	6 cut(s)	55, 60, 198, 424, 445, 737
MboII	GAAGA	6 cut(s)	149, 361, 372, 497, 689, 747
MfeI	CAATTG	1 cut(s)	354
MflI	RGATCY	2 cut(s)	424, 445
MhlI	GDGCHC	3 cut(s)	456, 552, 645
MlsI	TGGCCA	1 cut(s)	719
MluCI	AATT	6 cut(s)	310, 354, 363, 488, 590, 724
MluNI	TGGCCA	1 cut(s)	719
MlyI	GAGTC	1 cut(s)	128
MmeI	TCCRAC	3 cut(s)	111, 176, 734
MnlI	CCTC	6 cut(s)	17, 275, 427, 653, 659, 769
Mox20I	TGGCCA	1 cut(s)	719
Mph1103I	ATGCAT	1 cut(s)	633
MroXI	GAANNNNTTC	2 cut(s)	489, 591
MscI	TGGCCA	1 cut(s)	719
MseI	TTAA	3 cut(s)	140, 336, 479
Msp20I	TGGCCA	1 cut(s)	719
MspR9I	CCNGG	3 cut(s)	300, 391, 867
MunI	CAATTG	1 cut(s)	354
MvaI	CCWGG	3 cut(s)	300, 391, 867
MwoI	GCNNNNNNNGC	4 cut(s)	71, 108, 623, 669
NcoI	CCATGG	1 cut(s)	569
NdeII	GATC	6 cut(s)	55, 60, 198, 424, 445, 737
NlaIII	CATG	8 cut(s)	17, 268, 377, 416, 514, 573, 631, 635
NlaIV	GGNNCC	6 cut(s)	94, 447, 642, 643, 664, 708
NmuCI	GTSAC	4 cut(s)	341, 397, 524, 607
NsiI	ATGCAT	1 cut(s)	633
NspI	RCATGY	1 cut(s)	635
NspV	TTCGAA	2 cut(s)	440, 595
PagI	TCATGA	1 cut(s)	373
PcsI	WCGNNNNNNNCGW	2 cut(s)	234, 437
PdmI	GAANNNNTTC	2 cut(s)	489, 591
PfeI	GAWTC	1 cut(s)	533
PkrI	GCNGC	1 cut(s)	855
PleI	GAGTC	1 cut(s)	128
PmaCI	CACGTG	1 cut(s)	547
PmlI	CACGTG	1 cut(s)	547
PpsI	GAGTC	1 cut(s)	128
Ppu21I	YACGTR	1 cut(s)	547
Psp124BI	GAGCTC	1 cut(s)	456
Psp6I	CCWGG	3 cut(s)	298, 389, 865
PspCI	CACGTG	1 cut(s)	547
PspGI	CCWGG	3 cut(s)	298, 389, 865
PspN4I	GGNNCC	6 cut(s)	94, 447, 642, 643, 664, 708
PspOMI	GGGCCC	1 cut(s)	641
PspPI	GGNCC	3 cut(s)	641, 642, 869
PsuI	RGATCY	2 cut(s)	424, 445
RsaI	GTAC	1 cut(s)	94
RsaNI	GTAC	1 cut(s)	93
SacI	GAGCTC	1 cut(s)	456
SaqAI	TTAA	3 cut(s)	140, 336, 479
SatI	GCNGC	1 cut(s)	854
Sau3AI	GATC	6 cut(s)	55, 60, 198, 424, 445, 737
Sau96I	GGNCC	3 cut(s)	641, 642, 869
SchI	GAGTC	1 cut(s)	128
ScrFI	CCNGG	3 cut(s)	300, 391, 867
SduI	GDGCHC	3 cut(s)	456, 552, 645
SfaNI	GCATC	5 cut(s)	29, 98, 613, 681, 810
SfuI	TTCGAA	2 cut(s)	440, 595
SmlI	CTYRAG	1 cut(s)	553
SmoI	CTYRAG	1 cut(s)	553
Sse9I	AATT	6 cut(s)	310, 354, 363, 488, 590, 724
SsiI	CCGC	4 cut(s)	272, 566, 666, 744
SspMI	CTAG	3 cut(s)	71, 530, 696
SstI	GAGCTC	1 cut(s)	456
StyD4I	CCNGG	3 cut(s)	298, 389, 865
StyI	CCWWGG	3 cut(s)	103, 189, 569
TaaI	ACNGT	4 cut(s)	11, 292, 477, 613
TaiI	ACGT	1 cut(s)	549
TaqI	TCGA	8 cut(s)	440, 460, 483, 595, 675, 740, 765, 783
TasI	AATT	6 cut(s)	310, 354, 363, 488, 590, 724
TfiI	GAWTC	1 cut(s)	533
Tru1I	TTAA	3 cut(s)	140, 336, 479
Tru9I	TTAA	3 cut(s)	140, 336, 479
TseFI	GTSAC	4 cut(s)	341, 397, 524, 607
TseI	GCWGC	1 cut(s)	853
Tsp45I	GTSAC	4 cut(s)	341, 397, 524, 607
TspDTI	ATGAA	4 cut(s)	17, 253, 362, 401
TspGWI	ACGGA	2 cut(s)	64, 186
XagI	CCTNNNNNAGG	1 cut(s)	653
XapI	RAATTY	3 cut(s)	363, 488, 590
XceI	RCATGY	1 cut(s)	635
XcmI	CCANNNNNNNNNTGG	1 cut(s)	634
XmiI	GTMKAC	1 cut(s)	507
XmnI	GAANNNNTTC	2 cut(s)	489, 591
XspI	CTAG	3 cut(s)	71, 530, 696
Zsp2I	ATGCAT	1 cut(s)	633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.