Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000042.1

Orthogroup ID

OG0002765

Physical Location & Seq

Genomic Coordinates Forward (+)

315906 .. 316397

Gene Structure 492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000042.1_g000053.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

atgaacttctcaactgagtcagtgaaggattttcctagtagcattaaagagatggtcaacaattgctggctggagtacttacatttctcagagtacatcaaataccgatcaccatggaacatactatgtacacactttcgggtaggaacagtgacagttgcaggagatgccttgcatgcaatgactccgttcattgctcagggtggctcaactgctttggaagacgcagttgtccttgctaggtgcttcgcacgaaaggctgttgtcggtggtccaggtgaaataggaagcaaacttatggtagagaaagcatttgatgaatacctaaaagagcggaaaatacgacttctaagactcactatcgaatcaaccctaatcggaaagatggaagaaacttcatcaaagctcatcaagctcttatatattgtgctcatggtggtcctatttcgcaactcatttgctcacgctcgctatgactgtggcaaactctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_3

Protein Analysis

163

Amino Acids

18.43

Weight (kDa)

8.88

Isoelectric Point (pI)

35.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002765)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15760 AT4G15760
fragaria_vesca	FvH4_7g03910
malus_domestica	MD07G1043700.v1.1 MD10G1041900.v1.1 MD10G1042000.v1.1
prunus_persica	Prupe.2G043900_v2.0.a1 Prupe.8G046000_v2.0.a1 Prupe.8G046000_v2.0.a1 Prupe.8G046000_v2.0.a1 Prupe.8G046000_v2.0.a1 Prupe.8G046000_v2.0.a1
pyrus_communis	pycom10g02900 pycom10g02910
rosa_chinensis	RchiOBHm_Chr1g0327481 RchiOBHm_Chr1g0327491 RchiOBHm_Chr2g0087851
rosa_laevigata	RLG00000015907 RLG00000029990
rosa_multiflora	Rmu_sc0003600.1_g000007 Rmu_sc0008385.1_g000017 Rmu_ssc0000042.1_g000053
rosa_roxburghii	Rroxscaffold_2G00151770 Rroxscaffold_2G00153170 Rroxscaffold_4G00322630
rosa_rugosa	Rorug01G0067300 Rorug01G0479000
rosa_samantha	Rh1AG084300 Rh1BG067000 Rh1CG082000 Rh1CG082100 Rh1DG088600 Rh1DG088700 Rh2AG033600 Rh2BG032800 Rh2CG033500 Rh2DG033200
rosa_wichuraiana	Rw1G006630 Rw2G002620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	230
AccBSI	CCGCTC	1 cut(s)	334
AciI	CCGC	1 cut(s)	334
AfaI	GTAC	3 cut(s)	77, 95, 130
AjnI	CCWGG	1 cut(s)	274
AluBI	AGCT	2 cut(s)	406, 415
AluI	AGCT	2 cut(s)	406, 415
Alw21I	GWGCWC	1 cut(s)	432
AspS9I	GGNCC	2 cut(s)	272, 439
AsuHPI	GGTGA	2 cut(s)	102, 290
AvaII	GGWCC	2 cut(s)	272, 439
BbsI	GAAGAC	1 cut(s)	228
Bbv12I	GWGCWC	1 cut(s)	432
BccI	CCATC	2 cut(s)	46, 379
BciT130I	CCWGG	1 cut(s)	276
BfaI	CTAG	2 cut(s)	36, 240
BmcAI	AGTACT	1 cut(s)	77
Bme1390I	CCNGG	1 cut(s)	276
Bme18I	GGWCC	2 cut(s)	272, 439
BmgT120I	GGNCC	2 cut(s)	272, 439
BmrFI	CCNGG	1 cut(s)	276
BmsI	GCATC	1 cut(s)	157
BpiI	GAAGAC	1 cut(s)	228
BpmI	CTGGAG	1 cut(s)	92
Bpu10I	CCTNAGC	1 cut(s)	198
BsaJI	CCNNGG	1 cut(s)	113
Bse3DI	GCAATG	2 cut(s)	186, 192
BseBI	CCWGG	1 cut(s)	276
BseDI	CCNNGG	1 cut(s)	113
BseMI	GCAATG	2 cut(s)	186, 192
BseMII	CTCAG	3 cut(s)	6, 102, 212
BsiHKAI	GWGCWC	1 cut(s)	432
Bsp1286I	GDGCHC	1 cut(s)	432
Bsp1407I	TGTACA	1 cut(s)	128
Bsp143I	GATC	1 cut(s)	107
Bsp19I	CCATGG	1 cut(s)	113
BspACI	CCGC	1 cut(s)	334
BspCNI	CTCAG	3 cut(s)	7, 101, 211
BsrBI	CCGCTC	1 cut(s)	334
BsrDI	GCAATG	2 cut(s)	186, 192
BsrGI	TGTACA	1 cut(s)	128
BssECI	CCNNGG	1 cut(s)	113
BssMI	GATC	1 cut(s)	107
BssT1I	CCWWGG	1 cut(s)	113
Bst2UI	CCWGG	1 cut(s)	276
Bst4CI	ACNGT	3 cut(s)	151, 157, 479
BstAPI	GCANNNNNTGC	1 cut(s)	167
BstAUI	TGTACA	1 cut(s)	128
BstC8I	GCNNGC	3 cut(s)	68, 177, 469
BstDEI	CTNAG	4 cut(s)	15, 88, 198, 350
BstDSI	CCRYGG	1 cut(s)	113
BstKTI	GATC	1 cut(s)	110
BstMBI	GATC	1 cut(s)	107
BstMWI	GCNNNNNNNGC	4 cut(s)	167, 176, 257, 412
BstNI	CCWGG	1 cut(s)	276
BstNSI	RCATGY	1 cut(s)	179
BstSCI	CCNGG	1 cut(s)	274
BstV2I	GAAGAC	1 cut(s)	228
BtgI	CCRYGG	1 cut(s)	113
BtsIMutI	CAGTG	2 cut(s)	27, 156
Cac8I	GCNNGC	3 cut(s)	68, 177, 469
Cfr13I	GGNCC	2 cut(s)	272, 439
CseI	GACGC	1 cut(s)	233
Csp6I	GTAC	3 cut(s)	76, 94, 129
CviAII	CATG	3 cut(s)	114, 176, 433
CviJI	RGCY	5 cut(s)	70, 207, 260, 406, 415
CviKI_1	RGCY	5 cut(s)	70, 207, 260, 406, 415
CviQI	GTAC	3 cut(s)	76, 94, 129
DdeI	CTNAG	4 cut(s)	15, 88, 198, 350
DpnI	GATC	1 cut(s)	109
DpnII	GATC	1 cut(s)	107
DrdI	GACNNNNNNGTC	1 cut(s)	230
DseDI	GACNNNNNNGTC	1 cut(s)	230
Eco130I	CCWWGG	1 cut(s)	113
Eco47I	GGWCC	2 cut(s)	272, 439
EcoRII	CCWGG	1 cut(s)	274
EcoT14I	CCWWGG	1 cut(s)	113
ErhI	CCWWGG	1 cut(s)	113
FaeI	CATG	3 cut(s)	117, 179, 436
FaiI	YATR	9 cut(s)	115, 122, 127, 177, 299, 421, 423, 434, 474
FatI	CATG	3 cut(s)	113, 175, 432
FspBI	CTAG	2 cut(s)	36, 240
GsuI	CTGGAG	1 cut(s)	92
HgaI	GACGC	1 cut(s)	233
Hin1II	CATG	3 cut(s)	117, 179, 436
HincII	GTYRAC	1 cut(s)	58
HindII	GTYRAC	1 cut(s)	58
HinfI	GANTC	4 cut(s)	17, 184, 354, 365
HphI	GGTGA	2 cut(s)	102, 290
Hpy166II	GTNNAC	2 cut(s)	58, 131
Hpy188I	TCNGA	2 cut(s)	91, 380
Hpy8I	GTNNAC	2 cut(s)	58, 131
HpyAV	CCTTC	1 cut(s)	19
HpyCH4III	ACNGT	3 cut(s)	151, 157, 479
HpyCH4V	TGCA	3 cut(s)	161, 175, 179
HpyF10VI	GCNNNNNNNGC	4 cut(s)	167, 176, 257, 412
HpyF3I	CTNAG	4 cut(s)	15, 88, 198, 350
Hsp92II	CATG	3 cut(s)	117, 179, 436
Kzo9I	GATC	1 cut(s)	107
LpnPI	CCDG	6 cut(s)	52, 56, 147, 185, 261, 288
LweI	GCATC	1 cut(s)	157
MaeI	CTAG	2 cut(s)	36, 240
MaeIII	GTNAC	1 cut(s)	151
MalI	GATC	1 cut(s)	109
MbiI	CCGCTC	1 cut(s)	334
MboI	GATC	1 cut(s)	107
MboII	GAAGA	2 cut(s)	233, 401
MfeI	CAATTG	1 cut(s)	61
MhlI	GDGCHC	1 cut(s)	432
MluCI	AATT	1 cut(s)	61
MlyI	GAGTC	3 cut(s)	26, 178, 348
MseI	TTAA	1 cut(s)	45
MspR9I	CCNGG	1 cut(s)	276
MunI	CAATTG	1 cut(s)	61
MvaI	CCWGG	1 cut(s)	276
MwoI	GCNNNNNNNGC	4 cut(s)	167, 176, 257, 412
NcoI	CCATGG	1 cut(s)	113
NdeII	GATC	1 cut(s)	107
NlaIII	CATG	3 cut(s)	117, 179, 436
NmuCI	GTSAC	1 cut(s)	151
NspI	RCATGY	1 cut(s)	179
PaeI	GCATGC	1 cut(s)	179
PfeI	GAWTC	1 cut(s)	365
PleI	GAGTC	3 cut(s)	25, 178, 348
PpsI	GAGTC	3 cut(s)	25, 178, 348
Psp6I	CCWGG	1 cut(s)	274
PspGI	CCWGG	1 cut(s)	274
PspPI	GGNCC	2 cut(s)	272, 439
RsaI	GTAC	3 cut(s)	77, 95, 130
RsaNI	GTAC	3 cut(s)	76, 94, 129
SaqAI	TTAA	1 cut(s)	45
Sau3AI	GATC	1 cut(s)	107
Sau96I	GGNCC	2 cut(s)	272, 439
ScaI	AGTACT	1 cut(s)	77
SchI	GAGTC	3 cut(s)	26, 178, 348
ScrFI	CCNGG	1 cut(s)	276
SduI	GDGCHC	1 cut(s)	432
SetI	ASST	5 cut(s)	245, 280, 327, 408, 417
SfaNI	GCATC	1 cut(s)	157
SinI	GGWCC	2 cut(s)	272, 439
SphI	GCATGC	1 cut(s)	179
Sse9I	AATT	1 cut(s)	61
SsiI	CCGC	1 cut(s)	334
SspMI	CTAG	2 cut(s)	36, 240
StyD4I	CCNGG	1 cut(s)	274
StyI	CCWWGG	1 cut(s)	113
TaaI	ACNGT	3 cut(s)	151, 157, 479
TaqI	TCGA	1 cut(s)	363
TasI	AATT	1 cut(s)	61
TatI	WGTACW	3 cut(s)	75, 93, 128
TfiI	GAWTC	1 cut(s)	365
Tru1I	TTAA	1 cut(s)	45
Tru9I	TTAA	1 cut(s)	45
TscAI	CASTG	2 cut(s)	27, 156
TseFI	GTSAC	1 cut(s)	151
Tsp45I	GTSAC	1 cut(s)	151
TspDTI	ATGAA	4 cut(s)	17, 181, 333, 387
TspGWI	ACGGA	1 cut(s)	177
TspRI	CASTG	2 cut(s)	27, 156
VpaK11BI	GGWCC	2 cut(s)	272, 439
XceI	RCATGY	1 cut(s)	179
XspI	CTAG	2 cut(s)	36, 240
ZrmI	AGTACT	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.