Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0002765

Physical Location & Seq

Genomic Coordinates Reverse (-)

3232390 .. 3233174

Gene Structure 785 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g02910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGTTATCGGAGGTTAGAGGTTTTACAGTTTACGCGGGTGGTCATAATTTTGGAAACGAGTTTGTACAAGTTAAGGGTGACAAGAACACAATTGGAAGACTTCCAGTTCATGAAAACTTGGTCTACTGGTTCGTCACTCACCAAGTCCATGGCAGACAAGATCCGTCGAAGGTTTCGAAGGATCCAGAGCTTATTCGGCAATTTACATTACAATCAATACTCGAAGAATTTCCTTCAGAAATGGTAGACATGATAAGAAAGAGTGAACTAGAATCAGTATCTCAAGTGCGCTTGAGATATCGTCCGCCATGGGAGATACTAGTACAAAATTTTCAAAAAGGAAGCGTGACGGTGGCTGGAGATGCCATGCATGTGATGGGGCCTTTCATCGGTCAGGGAGGCGCCACAGGCATCGAAGACGCCATTGTTATTGCTAGAAGCTTGGCTCCCGCATTGGCCAAAAATCACTATAAAAAATGGAGTGGAAGGAATGGAATGATGGTTGAAGTGGGAGAGGCTTTCGACAAGTATGTGAAAGAGAGAAGGATGAGATTGGTGATGCTCTCTACACAAACTTATCTACTTGGTTTGCTGCAACAAGATTCAGGGTCGATGCTTAAATTTGTGTGTTTAATCTTGATGGCTACTTTATTTAGTGATGTAATTCGTCACACTCGATATGATTGTGGACGTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0012505 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051704 GO:0051707

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_3

Protein Analysis

233

Amino Acids

26.31

Weight (kDa)

9.05

Isoelectric Point (pI)

42.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_3	PF01494	69 - 152	2.9e-09	FAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002765)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15760 AT4G15760
fragaria_vesca	FvH4_7g03910
malus_domestica	MD07G1043700.v1.1 MD10G1041900.v1.1 MD10G1042000.v1.1
prunus_persica	Prupe.2G043900_v2.0.a1 Prupe.8G046000_v2.0.a1 Prupe.8G046000_v2.0.a1 Prupe.8G046000_v2.0.a1 Prupe.8G046000_v2.0.a1 Prupe.8G046000_v2.0.a1
pyrus_communis	pycom10g02900 pycom10g02910
rosa_chinensis	RchiOBHm_Chr1g0327481 RchiOBHm_Chr1g0327491 RchiOBHm_Chr2g0087851
rosa_laevigata	RLG00000015907 RLG00000029990
rosa_multiflora	Rmu_sc0003600.1_g000007 Rmu_sc0008385.1_g000017 Rmu_ssc0000042.1_g000053
rosa_roxburghii	Rroxscaffold_2G00151770 Rroxscaffold_2G00153170 Rroxscaffold_4G00322630
rosa_rugosa	Rorug01G0067300 Rorug01G0479000
rosa_samantha	Rh1AG084300 Rh1BG067000 Rh1CG082000 Rh1CG082100 Rh1DG088600 Rh1DG088700 Rh2AG033600 Rh2BG032800 Rh2CG033500 Rh2DG033200
rosa_wichuraiana	Rw1G006630 Rw2G002620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	694
AccB1I	GGYRCC	1 cut(s)	401
AccI	GTMKAC	2 cut(s)	123, 246
AccII	CGCG	1 cut(s)	35
AciI	CCGC	3 cut(s)	35, 305, 450
AclWI	GGATC	3 cut(s)	155, 176, 189
AcoI	YGGCCR	1 cut(s)	456
AcsI	RAATTY	3 cut(s)	227, 328, 620
AcuI	CTGAAG	1 cut(s)	219
AcyI	GRCGYC	3 cut(s)	402, 420, 691
AfaI	GTAC	2 cut(s)	66, 324
AfiI	CCNNNNNNNGG	1 cut(s)	389
AgsI	TTSAA	2 cut(s)	335, 506
AhlI	ACTAGT	1 cut(s)	319
AluBI	AGCT	2 cut(s)	190, 441
AluI	AGCT	2 cut(s)	190, 441
AlwI	GGATC	3 cut(s)	155, 176, 189
AoxI	GGCC	2 cut(s)	380, 456
ApeKI	GCWGC	1 cut(s)	592
ApoI	RAATTY	3 cut(s)	227, 328, 620
Asp700I	GAANNNNTTC	1 cut(s)	228
AspLEI	GCGC	2 cut(s)	291, 404
AspS9I	GGNCC	1 cut(s)	380
AsuHPI	GGTGA	3 cut(s)	89, 131, 568
AsuII	TTCGAA	1 cut(s)	176
BalI	TGGCCA	1 cut(s)	458
BamHI	GGATCC	1 cut(s)	181
BanI	GGYRCC	1 cut(s)	401
BbsI	GAAGAC	2 cut(s)	103, 423
BbvI	GCAGC	1 cut(s)	579
BccI	CCATC	3 cut(s)	370, 493, 634
BcuI	ACTAGT	1 cut(s)	319
BfaI	CTAG	3 cut(s)	269, 320, 435
BfoI	RGCGCY	1 cut(s)	405
BisI	GCNGC	1 cut(s)	593
BlsI	GCNGC	1 cut(s)	594
BmgT120I	GGNCC	1 cut(s)	380
BmiI	GGNNCC	4 cut(s)	183, 381, 403, 447
BmsI	GCATC	4 cut(s)	352, 420, 549, 603
BpiI	GAAGAC	2 cut(s)	103, 423
BpmI	CTGGAG	1 cut(s)	378
Bpu14I	TTCGAA	1 cut(s)	176
BpuEI	CTTGAG	2 cut(s)	267, 313
BsaHI	GRCGYC	3 cut(s)	402, 420, 691
BsaJI	CCNNGG	2 cut(s)	148, 308
Bsc4I	CCNNNNNNNGG	1 cut(s)	389
Bse1I	ACTGG	2 cut(s)	104, 131
BseDI	CCNNGG	2 cut(s)	148, 308
BseGI	GGATG	1 cut(s)	552
BseLI	CCNNNNNNNGG	1 cut(s)	389
BseNI	ACTGG	2 cut(s)	104, 131
BseXI	GCAGC	1 cut(s)	579
Bsh1236I	CGCG	1 cut(s)	35
BshFI	GGCC	2 cut(s)	382, 458
BshNI	GGYRCC	1 cut(s)	401
BslI	CCNNNNNNNGG	1 cut(s)	389
BsnI	GGCC	2 cut(s)	382, 458
Bsp119I	TTCGAA	1 cut(s)	176
Bsp1407I	TGTACA	1 cut(s)	64
Bsp143I	GATC	2 cut(s)	160, 181
Bsp19I	CCATGG	2 cut(s)	148, 308
BspACI	CCGC	3 cut(s)	35, 305, 450
BspANI	GGCC	2 cut(s)	382, 458
BspFNI	CGCG	1 cut(s)	35
BspHI	TCATGA	1 cut(s)	109
BspLI	GGNNCC	4 cut(s)	183, 381, 403, 447
BspPI	GGATC	3 cut(s)	155, 176, 189
BspT104I	TTCGAA	1 cut(s)	176
BspT107I	GGYRCC	1 cut(s)	401
BsrGI	TGTACA	1 cut(s)	64
BsrI	ACTGG	2 cut(s)	104, 131
BssECI	CCNNGG	2 cut(s)	148, 308
BssMI	GATC	2 cut(s)	160, 181
BssNI	GRCGYC	3 cut(s)	402, 420, 691
BssT1I	CCWWGG	2 cut(s)	148, 308
Bst4CI	ACNGT	2 cut(s)	28, 352
BstACI	GRCGYC	3 cut(s)	402, 420, 691
BstAUI	TGTACA	1 cut(s)	64
BstBI	TTCGAA	1 cut(s)	176
BstDSI	CCRYGG	2 cut(s)	148, 308
BstF5I	GGATG	1 cut(s)	552
BstFNI	CGCG	1 cut(s)	35
BstH2I	RGCGCY	1 cut(s)	405
BstHHI	GCGC	2 cut(s)	291, 404
BstKTI	GATC	2 cut(s)	163, 184
BstMBI	GATC	2 cut(s)	160, 181
BstMWI	GCNNNNNNNGC	3 cut(s)	196, 362, 408
BstNSI	RCATGY	1 cut(s)	374
BstUI	CGCG	1 cut(s)	35
BstV1I	GCAGC	1 cut(s)	579
BstV2I	GAAGAC	2 cut(s)	103, 423
BstX2I	RGATCY	2 cut(s)	160, 181
BstXI	CCANNNNNNTGG	1 cut(s)	149
BstYI	RGATCY	2 cut(s)	160, 181
BsuRI	GGCC	2 cut(s)	382, 458
BtgI	CCRYGG	2 cut(s)	148, 308
BtsCI	GGATG	1 cut(s)	552
CciI	TCATGA	1 cut(s)	109
CfoI	GCGC	2 cut(s)	291, 404
Cfr13I	GGNCC	1 cut(s)	380
CseI	GACGC	1 cut(s)	428
Csp6I	GTAC	2 cut(s)	65, 323
CviAII	CATG	6 cut(s)	110, 149, 250, 309, 367, 371
CviJI	RGCY	8 cut(s)	190, 356, 382, 441, 446, 458, 518, 644
CviKI_1	RGCY	8 cut(s)	190, 356, 382, 441, 446, 458, 518, 644
CviQI	GTAC	2 cut(s)	65, 323
DinI	GGCGCC	1 cut(s)	403
DpnI	GATC	2 cut(s)	162, 183
DpnII	GATC	2 cut(s)	160, 181
EaeI	YGGCCR	1 cut(s)	456
EciI	GGCGGA	1 cut(s)	294
Eco130I	CCWWGG	2 cut(s)	148, 308
Eco32I	GATATC	1 cut(s)	299
Eco57I	CTGAAG	1 cut(s)	219
EcoO109I	RGGNCCY	1 cut(s)	380
EcoRV	GATATC	1 cut(s)	299
EcoT14I	CCWWGG	2 cut(s)	148, 308
EcoT22I	ATGCAT	1 cut(s)	372
EgeI	GGCGCC	1 cut(s)	403
EheI	GGCGCC	1 cut(s)	403
ErhI	CCWWGG	2 cut(s)	148, 308
FaeI	CATG	6 cut(s)	113, 152, 253, 312, 370, 374
FatI	CATG	6 cut(s)	109, 148, 249, 308, 366, 370
FauI	CCCGC	2 cut(s)	28, 457
FblI	GTMKAC	2 cut(s)	123, 246
Fnu4HI	GCNGC	1 cut(s)	593
FokI	GGATG	1 cut(s)	559
Fsp4HI	GCNGC	1 cut(s)	593
FspBI	CTAG	3 cut(s)	269, 320, 435
GlaI	GCGC	2 cut(s)	290, 403
GluI	GCNGC	1 cut(s)	593
GsuI	CTGGAG	1 cut(s)	378
HaeII	RGCGCY	1 cut(s)	405
HaeIII	GGCC	2 cut(s)	382, 458
HgaI	GACGC	1 cut(s)	428
HhaI	GCGC	2 cut(s)	291, 404
Hin1I	GRCGYC	3 cut(s)	402, 420, 691
Hin1II	CATG	6 cut(s)	113, 152, 253, 312, 370, 374
Hin6I	GCGC	2 cut(s)	289, 402
HinP1I	GCGC	2 cut(s)	289, 402
HindIII	AAGCTT	1 cut(s)	439
HinfI	GANTC	2 cut(s)	272, 602
HphI	GGTGA	3 cut(s)	89, 131, 568
Hpy166II	GTNNAC	5 cut(s)	31, 124, 247, 266, 689
Hpy188I	TCNGA	2 cut(s)	10, 238
Hpy188III	TCNNGA	3 cut(s)	110, 185, 637
Hpy8I	GTNNAC	5 cut(s)	31, 124, 247, 266, 689
Hpy99I	CGWCG	1 cut(s)	169
HpyAV	CCTTC	5 cut(s)	163, 172, 243, 480, 537
HpyCH4III	ACNGT	2 cut(s)	28, 352
HpyCH4IV	ACGT	1 cut(s)	691
HpyCH4V	TGCA	2 cut(s)	370, 595
HpyF10VI	GCNNNNNNNGC	3 cut(s)	196, 362, 408
HpySE526I	ACGT	1 cut(s)	691
Hsp92I	GRCGYC	3 cut(s)	402, 420, 691
Hsp92II	CATG	6 cut(s)	113, 152, 253, 312, 370, 374
HspAI	GCGC	2 cut(s)	289, 402
KasI	GGCGCC	1 cut(s)	401
Kzo9I	GATC	2 cut(s)	160, 181
LmnI	GCTCC	1 cut(s)	451
LpnPI	CCDG	7 cut(s)	112, 117, 198, 342, 380, 393, 591
Lsp1109I	GCAGC	1 cut(s)	579
LweI	GCATC	4 cut(s)	352, 420, 549, 603
MaeI	CTAG	3 cut(s)	269, 320, 435
MaeII	ACGT	1 cut(s)	691
MaeIII	GTNAC	4 cut(s)	77, 133, 346, 668
MalI	GATC	2 cut(s)	162, 183
MboI	GATC	2 cut(s)	160, 181
MboII	GAAGA	3 cut(s)	108, 236, 428
MfeI	CAATTG	1 cut(s)	90
MflI	RGATCY	2 cut(s)	160, 181
MlsI	TGGCCA	1 cut(s)	458
MluCI	AATT	7 cut(s)	46, 90, 200, 227, 328, 620, 663
MluNI	TGGCCA	1 cut(s)	458
Mly113I	GGCGCC	1 cut(s)	402
MnlI	CCTC	4 cut(s)	4, 11, 392, 508
Mox20I	TGGCCA	1 cut(s)	458
Mph1103I	ATGCAT	1 cut(s)	372
MroXI	GAANNNNTTC	1 cut(s)	228
MscI	TGGCCA	1 cut(s)	458
MseI	TTAA	4 cut(s)	72, 618, 632, 697
MslI	CAYNNNNRTG	1 cut(s)	371
Msp20I	TGGCCA	1 cut(s)	458
MunI	CAATTG	1 cut(s)	90
MvnI	CGCG	1 cut(s)	35
MwoI	GCNNNNNNNGC	3 cut(s)	196, 362, 408
NarI	GGCGCC	1 cut(s)	402
NcoI	CCATGG	2 cut(s)	148, 308
NdeII	GATC	2 cut(s)	160, 181
NlaIII	CATG	6 cut(s)	113, 152, 253, 312, 370, 374
NlaIV	GGNNCC	4 cut(s)	183, 381, 403, 447
NmuCI	GTSAC	4 cut(s)	77, 133, 346, 668
NsiI	ATGCAT	1 cut(s)	372
NspI	RCATGY	1 cut(s)	374
NspV	TTCGAA	1 cut(s)	176
PagI	TCATGA	1 cut(s)	109
PcsI	WCGNNNNNNNCGW	2 cut(s)	173, 673
PdmI	GAANNNNTTC	1 cut(s)	228
PfeI	GAWTC	2 cut(s)	272, 602
PkrI	GCNGC	1 cut(s)	594
PluTI	GGCGCC	1 cut(s)	405
PspN4I	GGNNCC	4 cut(s)	183, 381, 403, 447
PspPI	GGNCC	1 cut(s)	380
PsuI	RGATCY	2 cut(s)	160, 181
RsaI	GTAC	2 cut(s)	66, 324
RsaNI	GTAC	2 cut(s)	65, 323
RseI	CAYNNNNRTG	1 cut(s)	371
SaqAI	TTAA	4 cut(s)	72, 618, 632, 697
SatI	GCNGC	1 cut(s)	593
Sau3AI	GATC	2 cut(s)	160, 181
Sau96I	GGNCC	1 cut(s)	380
SetI	ASST	6 cut(s)	15, 22, 174, 192, 443, 694
SfaNI	GCATC	4 cut(s)	352, 420, 549, 603
SfoI	GGCGCC	1 cut(s)	403
SfuI	TTCGAA	1 cut(s)	176
SmiMI	CAYNNNNRTG	1 cut(s)	371
SmlI	CTYRAG	2 cut(s)	282, 292
SmoI	CTYRAG	2 cut(s)	282, 292
SpeI	ACTAGT	1 cut(s)	319
Sse9I	AATT	7 cut(s)	46, 90, 200, 227, 328, 620, 663
SsiI	CCGC	3 cut(s)	35, 305, 450
SspDI	GGCGCC	1 cut(s)	401
SspMI	CTAG	3 cut(s)	269, 320, 435
StyI	CCWWGG	2 cut(s)	148, 308
TaaI	ACNGT	2 cut(s)	28, 352
TaiI	ACGT	1 cut(s)	694
TaqI	TCGA	7 cut(s)	167, 176, 222, 414, 522, 611, 676
TaqII	GACCGA	1 cut(s)	380
TasI	AATT	7 cut(s)	46, 90, 200, 227, 328, 620, 663
TatI	WGTACW	2 cut(s)	64, 322
TfiI	GAWTC	2 cut(s)	272, 602
Tru1I	TTAA	4 cut(s)	72, 618, 632, 697
Tru9I	TTAA	4 cut(s)	72, 618, 632, 697
TseFI	GTSAC	4 cut(s)	77, 133, 346, 668
TseI	GCWGC	1 cut(s)	592
Tsp45I	GTSAC	4 cut(s)	77, 133, 346, 668
TspDTI	ATGAA	3 cut(s)	98, 126, 376
TspGWI	ACGGA	1 cut(s)	153
XapI	RAATTY	3 cut(s)	227, 328, 620
XceI	RCATGY	1 cut(s)	374
XcmI	CCANNNNNNNNNTGG	1 cut(s)	373
XmiI	GTMKAC	2 cut(s)	123, 246
XmnI	GAANNNNTTC	1 cut(s)	228
XspI	CTAG	3 cut(s)	269, 320, 435
ZraI	GACGTC	1 cut(s)	692
Zsp2I	ATGCAT	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.