Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002765

Physical Location & Seq

Genomic Coordinates Forward (+)

89938722 .. 89940870

Gene Structure 2149 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00153170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGATGATGGAGATGGCAGAAGATACAAGAGAAAATATTGTGATTGTGGGTGGTGGGATTTGTGGCCTTGCCACTGCTCTTGCTCTTCACAGGAAGGGCATAAGAAGCTTGGTCCTAGAAAGATCAGAGAGTTTACGAGCAACGGGAGTAGCTATCATTATTCATTCTAATGGATGGCGTGCACTTGATCAACTTGGTGTTGCCTCCTATCTTAGACAAACTGCTAATCCTATACTATCGGGACAATTCAAGTCACTTAATGATAAAAAGCTACAAAAATTACCAGTTGGGAAAGAAGAATTACGATGTGTGAAAAGGACTGATCTGATGAATATCATGGCTGATAATCTGCCACAAAACACCGTACGTTTTGGGTGCAACGTACTTTCTATCGAGTTGGATCCCATAACTTCTTCTCCAGTTCTTCAACTTCAAGATGGAACCAGTTTGAATGCCAAGGTTGTGATCGGATGCGATGGAGTGAACTCTACGATTTCATATATGATGGGGGCGACGGCTACAAATATATTCAACGTATGTGGGATAAGAGGTTTCACAAGTTATCCAAGTGGTCATGAATTCGGCAGTGAGTTCAAACTCACCAAAAAAGATGATGTTCAAGTCGGACTATTGCCCATGACCACCAACCTGGTTTATTGGTTCCTTACTCGCAAATATACATCGCGCAAGTCCAAGATCTCCCGCAGCCAGAAATTAATTGGGGATATGGCAGCTGCATCAGTGAAGGACTTTCCTTCTAGCATCAAAGAGATGGTAGAAAATTGCTCACTAGAGTCTCTACATCTTTCAGAGTACATGAGATACCGACCACTGTGTGACATACTACGAAGAAGATTTCGGGTGGGAACAGTAACAGTGGCAGGAGATGCCTGGCATGCAATGGCTCCGTTCATTGCTCAAGGTGGTTCAGCCTCTTTGGAAGATGCAGTTGTGCTGGCTAGGTGCTTGGCGCGAAAGACTACTGTTGGTATTCCAAGTGGAAGAGTAAGCAAGACGATGGTAGAAGAAGCACTTGATGAATACCTAAAAGAGCGGAAACCGCGAGTTCTAAGACTATCTTTGCAGACGTACCTAATTGGGAAAATGCAAGATACTTCATCAAAATTTATCAAGTTCATATGCACTGTGTTCATGGCGATCATATTCTACGACTCGCATGGACATTCTCGTTATGATTGTGGTACCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_3

Protein Analysis

403

Amino Acids

44.63

Weight (kDa)

9.27

Isoelectric Point (pI)

42.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_3	PF01494	13 - 356	1.2e-29	FAD binding domain
DAO	PF01266	13 - 51	1.7e-06	FAD dependent oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002765)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15760 AT4G15760
fragaria_vesca	FvH4_7g03910
malus_domestica	MD07G1043700.v1.1 MD10G1041900.v1.1 MD10G1042000.v1.1
prunus_persica	Prupe.2G043900_v2.0.a1 Prupe.8G046000_v2.0.a1 Prupe.8G046000_v2.0.a1 Prupe.8G046000_v2.0.a1 Prupe.8G046000_v2.0.a1 Prupe.8G046000_v2.0.a1
pyrus_communis	pycom10g02900 pycom10g02910
rosa_chinensis	RchiOBHm_Chr1g0327481 RchiOBHm_Chr1g0327491 RchiOBHm_Chr2g0087851
rosa_laevigata	RLG00000015907 RLG00000029990
rosa_multiflora	Rmu_sc0003600.1_g000007 Rmu_sc0008385.1_g000017 Rmu_ssc0000042.1_g000053
rosa_roxburghii	Rroxscaffold_2G00151770 Rroxscaffold_2G00153170 Rroxscaffold_4G00322630
rosa_rugosa	Rorug01G0067300 Rorug01G0479000
rosa_samantha	Rh1AG084300 Rh1BG067000 Rh1CG082000 Rh1CG082100 Rh1DG088600 Rh1DG088700 Rh2AG033600 Rh2BG032800 Rh2CG033500 Rh2DG033200
rosa_wichuraiana	Rw1G006630 Rw2G002620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1202
AccB1I	GGYRCC	1 cut(s)	1202
AccBSI	CCGCTC	1 cut(s)	1054
AccII	CGCG	3 cut(s)	685, 973, 1063
AciI	CCGC	3 cut(s)	703, 1054, 1061
AclWI	GGATC	2 cut(s)	395, 408
AcsI	RAATTY	2 cut(s)	578, 1124
AdeI	CACNNNGTG	1 cut(s)	836
AfaI	GTAC	5 cut(s)	366, 384, 815, 1091, 1204
AgsI	TTSAA	7 cut(s)	250, 428, 434, 451, 532, 595, 620
AjnI	CCWGG	2 cut(s)	648, 890
AluBI	AGCT	4 cut(s)	108, 152, 271, 734
AluI	AGCT	4 cut(s)	108, 152, 271, 734
Alw21I	GWGCWC	1 cut(s)	184
Alw26I	GTCTC	1 cut(s)	801
Alw44I	GTGCAC	1 cut(s)	180
AlwI	GGATC	2 cut(s)	395, 408
AoxI	GGCC	1 cut(s)	64
ApaLI	GTGCAC	1 cut(s)	180
ApeKI	GCWGC	3 cut(s)	705, 731, 734
ApoI	RAATTY	2 cut(s)	578, 1124
AseI	ATTAAT	1 cut(s)	716
Asp718I	GGTACC	1 cut(s)	1202
AspLEI	GCGC	2 cut(s)	687, 973
AspS9I	GGNCC	1 cut(s)	112
AsuHPI	GGTGA	1 cut(s)	592
AvaII	GGWCC	1 cut(s)	112
BaeGI	GKGCMC	1 cut(s)	184
BamHI	GGATCC	1 cut(s)	400
BanI	GGYRCC	1 cut(s)	1202
Bbv12I	GWGCWC	1 cut(s)	184
BbvI	GCAGC	3 cut(s)	717, 721, 743
BccI	CCATC	7 cut(s)	7, 168, 431, 470, 499, 766, 1012
BceAI	ACGGC	1 cut(s)	531
BciT130I	CCWGG	2 cut(s)	650, 892
BclI	TGATCA	1 cut(s)	187
BcoDI	GTCTC	1 cut(s)	801
BfaI	CTAG	4 cut(s)	116, 759, 791, 960
BglII	AGATCT	1 cut(s)	696
BisI	GCNGC	3 cut(s)	706, 732, 735
BlsI	GCNGC	3 cut(s)	707, 733, 736
Bme1390I	CCNGG	2 cut(s)	650, 892
Bme18I	GGWCC	1 cut(s)	112
BmgT120I	GGNCC	1 cut(s)	112
BmiI	GGNNCC	5 cut(s)	402, 442, 662, 906, 1204
BmrFI	CCNGG	2 cut(s)	650, 892
BmsI	GCATC	5 cut(s)	461, 746, 771, 877, 934
BpmI	CTGGAG	1 cut(s)	402
BpuEI	CTTGAG	1 cut(s)	903
BsaBI	GATNNNNATC	1 cut(s)	332
BsaJI	CCNNGG	1 cut(s)	456
BsaXI	ACNNNNNCTCC	2 cut(s)	400, 430
Bse1I	ACTGG	3 cut(s)	284, 419, 444
Bse3DI	GCAATG	2 cut(s)	906, 912
Bse8I	GATNNNNATC	1 cut(s)	332
BseBI	CCWGG	2 cut(s)	650, 892
BseDI	CCNNGG	1 cut(s)	456
BseGI	GGATG	2 cut(s)	179, 476
BseJI	GATNNNNATC	1 cut(s)	332
BseMI	GCAATG	2 cut(s)	906, 912
BseNI	ACTGG	3 cut(s)	284, 419, 444
BseSI	GKGCMC	1 cut(s)	184
BseXI	GCAGC	3 cut(s)	717, 721, 743
Bsh1236I	CGCG	3 cut(s)	685, 973, 1063
BshFI	GGCC	1 cut(s)	66
BshNI	GGYRCC	1 cut(s)	1202
BsiHKAI	GWGCWC	1 cut(s)	184
BsiWI	CGTACG	1 cut(s)	364
BslFI	GGGAC	1 cut(s)	255
BsmAI	GTCTC	1 cut(s)	801
BsmFI	GGGAC	1 cut(s)	255
BsmI	GAATGC	1 cut(s)	457
BsnI	GGCC	1 cut(s)	66
Bsp1286I	GDGCHC	1 cut(s)	184
Bsp143I	GATC	7 cut(s)	122, 187, 322, 400, 465, 696, 1158
BspACI	CCGC	3 cut(s)	703, 1054, 1061
BspANI	GGCC	1 cut(s)	66
BspFNI	CGCG	3 cut(s)	685, 973, 1063
BspHI	TCATGA	1 cut(s)	574
BspLI	GGNNCC	5 cut(s)	402, 442, 662, 906, 1204
BspPI	GGATC	2 cut(s)	395, 408
BspQI	GCTCTTC	1 cut(s)	90
BspT107I	GGYRCC	1 cut(s)	1202
BsrBI	CCGCTC	1 cut(s)	1054
BsrDI	GCAATG	2 cut(s)	906, 912
BsrI	ACTGG	3 cut(s)	284, 419, 444
BssECI	CCNNGG	1 cut(s)	456
BssMI	GATC	7 cut(s)	122, 187, 322, 400, 465, 696, 1158
BssT1I	CCWWGG	1 cut(s)	456
Bst2UI	CCWGG	2 cut(s)	650, 892
Bst4CI	ACNGT	6 cut(s)	364, 834, 871, 877, 985, 1147
Bst6I	CTCTTC	2 cut(s)	90, 997
BstAPI	GCANNNNNTGC	1 cut(s)	887
BstC8I	GCNNGC	3 cut(s)	180, 897, 957
BstDEI	CTNAG	2 cut(s)	212, 1070
BstF5I	GGATG	2 cut(s)	179, 476
BstFNI	CGCG	3 cut(s)	685, 973, 1063
BstHHI	GCGC	2 cut(s)	687, 973
BstKTI	GATC	7 cut(s)	125, 190, 325, 403, 468, 699, 1161
BstMAI	GTCTC	1 cut(s)	801
BstMBI	GATC	7 cut(s)	122, 187, 322, 400, 465, 696, 1158
BstMWI	GCNNNNNNNGC	4 cut(s)	105, 887, 896, 1060
BstNI	CCWGG	2 cut(s)	650, 892
BstNSI	RCATGY	1 cut(s)	899
BstSCI	CCNGG	2 cut(s)	648, 890
BstSLI	GKGCMC	1 cut(s)	184
BstUI	CGCG	3 cut(s)	685, 973, 1063
BstV1I	GCAGC	3 cut(s)	717, 721, 743
BstX2I	RGATCY	2 cut(s)	400, 696
BstXI	CCANNNNNNTGG	1 cut(s)	649
BstYI	RGATCY	2 cut(s)	400, 696
BsuRI	GGCC	1 cut(s)	66
BtgZI	GCGATG	2 cut(s)	489, 666
BtsCI	GGATG	2 cut(s)	179, 476
BtsI	GCAGTG	2 cut(s)	72, 592
BtsIMutI	CAGTG	6 cut(s)	72, 592, 747, 830, 882, 1143
Cac8I	GCNNGC	3 cut(s)	180, 897, 957
CciI	TCATGA	1 cut(s)	574
CfoI	GCGC	2 cut(s)	687, 973
Cfr13I	GGNCC	1 cut(s)	112
CsiI	ACCWGGT	1 cut(s)	648
Csp6I	GTAC	5 cut(s)	365, 383, 814, 1090, 1203
CspCI	CAANNNNNGTGG	4 cut(s)	61, 96, 520, 555
CviAII	CATG	7 cut(s)	337, 575, 637, 817, 896, 1153, 1178
CviQI	GTAC	5 cut(s)	365, 383, 814, 1090, 1203
DdeI	CTNAG	2 cut(s)	212, 1070
DpnI	GATC	7 cut(s)	124, 189, 324, 402, 467, 698, 1160
DpnII	GATC	7 cut(s)	122, 187, 322, 400, 465, 696, 1158
DraIII	CACNNNGTG	1 cut(s)	836
Eam1104I	CTCTTC	2 cut(s)	90, 997
EarI	CTCTTC	2 cut(s)	90, 997
Eco130I	CCWWGG	1 cut(s)	456
Eco47I	GGWCC	1 cut(s)	112
EcoRI	GAATTC	1 cut(s)	578
EcoRII	CCWGG	2 cut(s)	648, 890
EcoT14I	CCWWGG	1 cut(s)	456
ErhI	CCWWGG	1 cut(s)	456
FaeI	CATG	7 cut(s)	340, 578, 640, 820, 899, 1156, 1181
FalI	AAGNNNNNCTT	4 cut(s)	1017, 1049, 1063, 1095
FaqI	GGGAC	1 cut(s)	255
FatI	CATG	7 cut(s)	336, 574, 636, 816, 895, 1152, 1177
FauI	CCCGC	1 cut(s)	710
FauNDI	CATATG	1 cut(s)	1139
FbaI	TGATCA	1 cut(s)	187
Fnu4HI	GCNGC	3 cut(s)	706, 732, 735
FokI	GGATG	2 cut(s)	186, 483
Fsp4HI	GCNGC	3 cut(s)	706, 732, 735
FspBI	CTAG	4 cut(s)	116, 759, 791, 960
GlaI	GCGC	2 cut(s)	686, 972
GluI	GCNGC	3 cut(s)	706, 732, 735
GsuI	CTGGAG	1 cut(s)	402
HaeIII	GGCC	1 cut(s)	66
HhaI	GCGC	2 cut(s)	687, 973
Hin1II	CATG	7 cut(s)	340, 578, 640, 820, 899, 1156, 1181
Hin6I	GCGC	2 cut(s)	685, 971
HinP1I	GCGC	2 cut(s)	685, 971
HindIII	AAGCTT	1 cut(s)	106
HinfI	GANTC	2 cut(s)	794, 1172
HphI	GGTGA	1 cut(s)	592
Hpy166II	GTNNAC	3 cut(s)	134, 182, 484
Hpy188I	TCNGA	6 cut(s)	127, 327, 470, 626, 811, 1211
Hpy188III	TCNNGA	3 cut(s)	240, 434, 575
Hpy8I	GTNNAC	3 cut(s)	134, 182, 484
Hpy99I	CGWCG	1 cut(s)	517
HpyAV	CCTTC	3 cut(s)	88, 739, 765
HpyCH4III	ACNGT	6 cut(s)	364, 834, 871, 877, 985, 1147
HpyCH4IV	ACGT	4 cut(s)	367, 381, 534, 1088
HpyCH4V	TGCA	8 cut(s)	182, 378, 737, 899, 947, 1084, 1108, 1143
HpyF10VI	GCNNNNNNNGC	4 cut(s)	105, 887, 896, 1060
HpyF3I	CTNAG	2 cut(s)	212, 1070
HpySE526I	ACGT	4 cut(s)	367, 381, 534, 1088
Hsp92II	CATG	7 cut(s)	340, 578, 640, 820, 899, 1156, 1181
HspAI	GCGC	2 cut(s)	685, 971
KpnI	GGTACC	1 cut(s)	1206
Ksp22I	TGATCA	1 cut(s)	187
Kzo9I	GATC	7 cut(s)	122, 187, 322, 400, 465, 696, 1158
LguI	GCTCTTC	1 cut(s)	90
LmnI	GCTCC	1 cut(s)	910
Lsp1109I	GCAGC	3 cut(s)	717, 721, 743
LweI	GCATC	5 cut(s)	461, 746, 771, 877, 934
MabI	ACCWGGT	1 cut(s)	648
MaeI	CTAG	4 cut(s)	116, 759, 791, 960
MaeII	ACGT	4 cut(s)	367, 381, 534, 1088
MaeIII	GTNAC	3 cut(s)	252, 836, 871
MalI	GATC	7 cut(s)	124, 189, 324, 402, 467, 698, 1160
MbiI	CCGCTC	1 cut(s)	1054
MboI	GATC	7 cut(s)	122, 187, 322, 400, 465, 696, 1158
MflI	RGATCY	2 cut(s)	400, 696
MhlI	GDGCHC	1 cut(s)	184
MluCI	AATT	9 cut(s)	245, 278, 299, 578, 713, 717, 781, 1095, 1124
MlyI	GAGTC	2 cut(s)	803, 1166
MmeI	TCCRAC	2 cut(s)	378, 604
MnlI	CCTC	3 cut(s)	214, 542, 943
MseI	TTAA	2 cut(s)	258, 716
MslI	CAYNNNNRTG	1 cut(s)	168
MspA1I	CMGCKG	1 cut(s)	734
MspR9I	CCNGG	2 cut(s)	650, 892
Mva1269I	GAATGC	1 cut(s)	457
MvaI	CCWGG	2 cut(s)	650, 892
MvnI	CGCG	3 cut(s)	685, 973, 1063
MwoI	GCNNNNNNNGC	4 cut(s)	105, 887, 896, 1060
NdeI	CATATG	1 cut(s)	1139
NdeII	GATC	7 cut(s)	122, 187, 322, 400, 465, 696, 1158
NlaIII	CATG	7 cut(s)	340, 578, 640, 820, 899, 1156, 1181
NlaIV	GGNNCC	5 cut(s)	402, 442, 662, 906, 1204
NmuCI	GTSAC	2 cut(s)	252, 836
NspI	RCATGY	1 cut(s)	899
PaeI	GCATGC	1 cut(s)	899
PagI	TCATGA	1 cut(s)	574
PciSI	GCTCTTC	1 cut(s)	90
PctI	GAATGC	1 cut(s)	457
Pfl23II	CGTACG	1 cut(s)	364
PkrI	GCNGC	3 cut(s)	707, 733, 736
PleI	GAGTC	2 cut(s)	802, 1166
PpsI	GAGTC	2 cut(s)	802, 1166
PshBI	ATTAAT	1 cut(s)	716
Psp6I	CCWGG	2 cut(s)	648, 890
PspGI	CCWGG	2 cut(s)	648, 890
PspLI	CGTACG	1 cut(s)	364
PspN4I	GGNNCC	5 cut(s)	402, 442, 662, 906, 1204
PspPI	GGNCC	1 cut(s)	112
PsuI	RGATCY	2 cut(s)	400, 696
PvuII	CAGCTG	1 cut(s)	734
RsaI	GTAC	5 cut(s)	366, 384, 815, 1091, 1204
RsaNI	GTAC	5 cut(s)	365, 383, 814, 1090, 1203
RseI	CAYNNNNRTG	1 cut(s)	168
SapI	GCTCTTC	1 cut(s)	90
SaqAI	TTAA	2 cut(s)	258, 716
SatI	GCNGC	3 cut(s)	706, 732, 735
Sau3AI	GATC	7 cut(s)	122, 187, 322, 400, 465, 696, 1158
Sau96I	GGNCC	1 cut(s)	112
SchI	GAGTC	2 cut(s)	803, 1166
ScrFI	CCNGG	2 cut(s)	650, 892
SduI	GDGCHC	1 cut(s)	184
SexAI	ACCWGGT	1 cut(s)	648
SfaNI	GCATC	5 cut(s)	461, 746, 771, 877, 934
SinI	GGWCC	1 cut(s)	112
SmiMI	CAYNNNNRTG	1 cut(s)	168
SmlI	CTYRAG	1 cut(s)	918
SmoI	CTYRAG	1 cut(s)	918
SphI	GCATGC	1 cut(s)	899
Sse9I	AATT	9 cut(s)	245, 278, 299, 578, 713, 717, 781, 1095, 1124
SsiI	CCGC	3 cut(s)	703, 1054, 1061
SspI	AATATT	1 cut(s)	37
SspMI	CTAG	4 cut(s)	116, 759, 791, 960
StyD4I	CCNGG	2 cut(s)	648, 890
StyI	CCWWGG	1 cut(s)	456
TaaI	ACNGT	6 cut(s)	364, 834, 871, 877, 985, 1147
TaiI	ACGT	4 cut(s)	370, 384, 537, 1091
TaqI	TCGA	1 cut(s)	393
TasI	AATT	9 cut(s)	245, 278, 299, 578, 713, 717, 781, 1095, 1124
TatI	WGTACW	1 cut(s)	813
Tru1I	TTAA	2 cut(s)	258, 716
Tru9I	TTAA	2 cut(s)	258, 716
TscAI	CASTG	6 cut(s)	79, 592, 747, 837, 882, 1150
TseFI	GTSAC	2 cut(s)	252, 836
TseI	GCWGC	3 cut(s)	705, 731, 734
Tsp45I	GTSAC	2 cut(s)	252, 836
TspDTI	ATGAA	9 cut(s)	152, 344, 486, 591, 901, 1053, 1107, 1126, 1141
TspGWI	ACGGA	1 cut(s)	897
TspRI	CASTG	6 cut(s)	79, 592, 747, 837, 882, 1150
VneI	GTGCAC	1 cut(s)	180
VpaK11BI	GGWCC	1 cut(s)	112
VspI	ATTAAT	1 cut(s)	716
XapI	RAATTY	2 cut(s)	578, 1124
XceI	RCATGY	1 cut(s)	899
XcmI	CCANNNNNNNNNTGG	1 cut(s)	716
XspI	CTAG	4 cut(s)	116, 759, 791, 960

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.