MD07G1043700.v1.1

FAD binding domain

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Reverse (-)
3753933 .. 3757418
3486 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1043700.v1.1.491

Sequence Viewer

Length: 1200 bp
ATGGAGATTGGTGATACAAGAGAGAGTATTGTAATTGTGGGTGGTGGGATTTGCGGCCTTGCCACTGCTCTTGCTCTTCACAGGAAAGGCATTAGAAGCGTGGTCCTGGAAAGATCAAACAGATTGCCAGCAACCGGGGTAGCTATTATCGTGCATCTAAACGGCTGGCGTGCACTTGATCAGCTTGGTGTTGCCTCACTCCTTAGACAAACTTCTTTTCCTATACTCTCCGGACAACTTATTTCACTCGGTAGTGGTGAAATTGAAAATATGGATGTAGGGAAAGAAGAACTGAGAGTTTTGAAGAGGACTGATCTCGTTAGTGTTTTGGCTGATAACTTGCCTCCAAACACTGTACGTTTCGGGTGCGAAGTGCATTCTGTTAAGTTGAATCCCGGAACTTCTTCTCCAGTTCTTCAACTTCAAGATGGAACAATTTTGAACCCCAAGGTTGTGATTGGATGCGACGGAGTGAACTCAATCGTATCAAATGTGATGGGGATGAAGGCTTCTAATATTTTCAGAATATGTGTCATAAGAGGCTTCACAAGATATCCAGATGGTCATGAATTCGGTAGTGAGTTCACTTTAACGAGAAAAGATGATACTCAGGTGGGACGACTCCCCATGACCGAAAGCCTGGTGTATTGGTTCATGACTCGAAAACATTCTTCTCAAGATTCGGCAGCTTCTAAGGACCAGAAACTAATTCGGGAGTTGGGAGTGAAATCGGTGGAGGGCTTCCCTACAAGCATCATAGAGATGTTTAAGAATTGCGAGCTAGACTCTATACATCTCACAGAGTACGTGAGATACCATGCACCATGGGACATACTACGAATACCCTCTCGCGCGGGGACTGTGTCACTGGCGGGAGATGCCATGCATACCATGGGACCTTTCCTTGCACAAGGTGGCTCAGCCGCACTAGAAGATGCAGTTGTGCTTGCTCGGTGCCTAGCTCAGAAAACTCGCGTTGATCTAAGAGGAAGAGGAACTAAACTGATGGTAGAGGAAGCGTTGGATCAGTATGTGAAAGAGCGAAAGACTCGAGTTCTGCGATTGTCTTTGCAGACATACCTGATTGGGAAAATGTTTCATACTTCATCACAGTTTGTTAAGCTCATATGCATTGTCCTTCTGGCAGTCCTGTTTAGCGAGTCACACGGCCATACCCGCTACGACTGCGGCAGTCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

400

Amino Acids

43.82

Weight (kDa)

8.86

Isoelectric Point (pI)

34.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 10 - 352 2.6e-28 FAD binding domain
DAO PF01266 10 - 43 3e-06 FAD dependent oxidoreductase
NAD_binding_8 PF13450 12 - 42 1e-05 NAD(P)-binding Rossmann-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 954
AccII CGCG 3 cut(s) 852, 854, 975
AccIII TCCGGA 1 cut(s) 230
AciI CCGC 6 cut(s) 54, 854, 872, 924, 1177, 1188
AclWI GGATC 1 cut(s) 1032
AcoI YGGCCR 1 cut(s) 1168
AcsI RAATTY 1 cut(s) 569
AdeI CACNNNGTG 1 cut(s) 914
AfaI GTAC 2 cut(s) 357, 806
AfiI CCNNNNNNNGG 1 cut(s) 134
AgsI TTSAA 6 cut(s) 266, 304, 391, 419, 425, 442
AjnI CCWGG 2 cut(s) 105, 639
AloI GAACNNNNNNTCC 2 cut(s) 391, 423
AluBI AGCT 6 cut(s) 143, 184, 689, 781, 962, 1123
AluI AGCT 6 cut(s) 143, 184, 689, 781, 962, 1123
Alw21I GWGCWC 1 cut(s) 175
Alw44I GTGCAC 1 cut(s) 171
AlwI GGATC 1 cut(s) 1032
Ama87I CYCGRG 1 cut(s) 1050
Aor13HI TCCGGA 1 cut(s) 230
AoxI GGCC 2 cut(s) 55, 1168
ApaLI GTGCAC 1 cut(s) 171
ApeKI GCWGC 1 cut(s) 686
ApoI RAATTY 1 cut(s) 569
Asp700I GAANNNNTTC 2 cut(s) 403, 667
AspLEI GCGC 1 cut(s) 854
AspS9I GGNCC 3 cut(s) 103, 697, 896
AsuC2I CCSGG 2 cut(s) 136, 396
AsuHPI GGTGA 2 cut(s) 23, 269
AvaI CYCGRG 1 cut(s) 1050
AvaII GGWCC 3 cut(s) 103, 697, 896
BaeGI GKGCMC 1 cut(s) 175
BaeI ACNNNNGTAYC 2 cut(s) 597, 630
BanI GGYRCC 1 cut(s) 954
Bbv12I GWGCWC 1 cut(s) 175
BbvI GCAGC 1 cut(s) 698
BccI CCATC 4 cut(s) 422, 490, 554, 1000
BceAI ACGGC 2 cut(s) 178, 1183
BciT130I CCWGG 2 cut(s) 107, 641
BclI TGATCA 1 cut(s) 178
BcnI CCSGG 2 cut(s) 136, 396
BfaI CTAG 3 cut(s) 782, 929, 959
BisI GCNGC 4 cut(s) 55, 687, 924, 1189
BlpI GCTNAGC 1 cut(s) 919
BlsI GCNGC 4 cut(s) 56, 688, 925, 1190
Bme1390I CCNGG 4 cut(s) 107, 136, 396, 641
Bme18I GGWCC 3 cut(s) 103, 697, 896
BmeT110I CYCGRG 1 cut(s) 1050
BmgT120I GGNCC 3 cut(s) 103, 697, 896
BmiI GGNNCC 2 cut(s) 897, 956
BmrFI CCNGG 4 cut(s) 107, 136, 396, 641
BmsI GCATC 5 cut(s) 163, 452, 762, 868, 925
BplI GAGNNNNNCTC 2 cut(s) 770, 802
BpmI CTGGAG 1 cut(s) 393
Bpu1102I GCTNAGC 1 cut(s) 919
BpuEI CTTGAG 1 cut(s) 660
BpuMI CCSGG 2 cut(s) 136, 396
BsaAI YACGTR 1 cut(s) 808
BsaJI CCNNGG 4 cut(s) 135, 447, 824, 891
BsaWI WCCGGW 1 cut(s) 230
BsaXI ACNNNNNCTCC 2 cut(s) 391, 421
Bsc4I CCNNNNNNNGG 1 cut(s) 134
Bse1I ACTGG 2 cut(s) 410, 873
BseAI TCCGGA 1 cut(s) 230
BseBI CCWGG 2 cut(s) 107, 641
BseDI CCNNGG 4 cut(s) 135, 447, 824, 891
BseGI GGATG 3 cut(s) 280, 467, 507
BseLI CCNNNNNNNGG 1 cut(s) 134
BseMII CTCAG 4 cut(s) 284, 623, 933, 977
BseNI ACTGG 2 cut(s) 410, 873
BseSI GKGCMC 1 cut(s) 175
BseXI GCAGC 1 cut(s) 698
Bsh1236I CGCG 3 cut(s) 852, 854, 975
BshFI GGCC 2 cut(s) 57, 1170
BshNI GGYRCC 1 cut(s) 954
BsiHKAI GWGCWC 1 cut(s) 175
BsiHKCI CYCGRG 1 cut(s) 1050
BsiSI CCGG 3 cut(s) 135, 231, 396
BslFI GGGAC 4 cut(s) 630, 842, 871, 909
BslI CCNNNNNNNGG 1 cut(s) 134
BsmFI GGGAC 4 cut(s) 630, 842, 871, 909
BsmI GAATGC 1 cut(s) 376
BsnI GGCC 2 cut(s) 57, 1170
BsoBI CYCGRG 1 cut(s) 1050
Bsp1286I GDGCHC 1 cut(s) 175
Bsp13I TCCGGA 1 cut(s) 230
Bsp143I GATC 5 cut(s) 113, 178, 313, 979, 1024
Bsp1720I GCTNAGC 1 cut(s) 919
Bsp19I CCATGG 2 cut(s) 824, 891
BspACI CCGC 6 cut(s) 54, 854, 872, 924, 1177, 1188
BspANI GGCC 2 cut(s) 57, 1170
BspCNI CTCAG 4 cut(s) 285, 622, 932, 976
BspEI TCCGGA 1 cut(s) 230
BspFNI CGCG 3 cut(s) 852, 854, 975
BspHI TCATGA 2 cut(s) 565, 654
BspLI GGNNCC 2 cut(s) 897, 956
BspPI GGATC 1 cut(s) 1032
BspQI GCTCTTC 1 cut(s) 81
BspT107I GGYRCC 1 cut(s) 954
BsrI ACTGG 2 cut(s) 410, 873
BssECI CCNNGG 4 cut(s) 135, 447, 824, 891
BssMI GATC 5 cut(s) 113, 178, 313, 979, 1024
BssT1I CCWWGG 3 cut(s) 447, 824, 891
Bst2UI CCWGG 2 cut(s) 107, 641
Bst4CI ACNGT 3 cut(s) 355, 862, 1113
Bst6I CTCTTC 3 cut(s) 81, 299, 985
BstBAI YACGTR 1 cut(s) 808
BstC8I GCNNGC 5 cut(s) 129, 167, 171, 779, 948
BstDEI CTNAG 7 cut(s) 203, 293, 609, 693, 919, 963, 983
BstDSI CCRYGG 2 cut(s) 824, 891
BstF5I GGATG 3 cut(s) 280, 467, 507
BstFNI CGCG 3 cut(s) 852, 854, 975
BstHHI GCGC 1 cut(s) 854
BstKTI GATC 5 cut(s) 116, 181, 316, 982, 1027
BstMBI GATC 5 cut(s) 113, 178, 313, 979, 1024
BstMWI GCNNNNNNNGC 4 cut(s) 96, 878, 1176, 1185
BstNI CCWGG 2 cut(s) 107, 641
BstSCI CCNGG 4 cut(s) 105, 134, 394, 639
BstSLI GKGCMC 1 cut(s) 175
BstUI CGCG 3 cut(s) 852, 854, 975
BstV1I GCAGC 1 cut(s) 698
BsuRI GGCC 2 cut(s) 57, 1170
BtgI CCRYGG 2 cut(s) 824, 891
BtsCI GGATG 3 cut(s) 280, 467, 507
BtsI GCAGTG 1 cut(s) 63
BtsIMutI CAGTG 3 cut(s) 63, 351, 866
Cac8I GCNNGC 5 cut(s) 129, 167, 171, 779, 948
CciI TCATGA 2 cut(s) 565, 654
CfoI GCGC 1 cut(s) 854
Cfr13I GGNCC 3 cut(s) 103, 697, 896
Csp6I GTAC 2 cut(s) 356, 805
CspCI CAANNNNNGTGG 2 cut(s) 52, 87
CviAII CATG 7 cut(s) 566, 628, 655, 818, 825, 883, 892
CviQI GTAC 2 cut(s) 356, 805
DdeI CTNAG 7 cut(s) 203, 293, 609, 693, 919, 963, 983
DpnI GATC 5 cut(s) 115, 180, 315, 981, 1026
DpnII GATC 5 cut(s) 113, 178, 313, 979, 1024
DraIII CACNNNGTG 1 cut(s) 914
EaeI YGGCCR 1 cut(s) 1168
Eam1104I CTCTTC 3 cut(s) 81, 299, 985
EarI CTCTTC 3 cut(s) 81, 299, 985
Eco130I CCWWGG 3 cut(s) 447, 824, 891
Eco32I GATATC 1 cut(s) 554
Eco47I GGWCC 3 cut(s) 103, 697, 896
Eco88I CYCGRG 1 cut(s) 1050
EcoO109I RGGNCCY 1 cut(s) 896
EcoRI GAATTC 1 cut(s) 569
EcoRII CCWGG 2 cut(s) 105, 639
EcoRV GATATC 1 cut(s) 554
EcoT14I CCWWGG 3 cut(s) 447, 824, 891
EcoT22I ATGCAT 2 cut(s) 888, 1133
ErhI CCWWGG 3 cut(s) 447, 824, 891
FaeI CATG 7 cut(s) 569, 631, 658, 821, 828, 886, 895
FaqI GGGAC 4 cut(s) 630, 842, 871, 909
FatI CATG 7 cut(s) 565, 627, 654, 817, 824, 882, 891
FauI CCCGC 3 cut(s) 847, 865, 1184
FauNDI CATATG 1 cut(s) 1127
FbaI TGATCA 1 cut(s) 178
Fnu4HI GCNGC 4 cut(s) 55, 687, 924, 1189
FokI GGATG 3 cut(s) 287, 474, 514
Fsp4HI GCNGC 4 cut(s) 55, 687, 924, 1189
FspBI CTAG 3 cut(s) 782, 929, 959
GlaI GCGC 1 cut(s) 853
GluI GCNGC 4 cut(s) 55, 687, 924, 1189
GsuI CTGGAG 1 cut(s) 393
HaeIII GGCC 2 cut(s) 57, 1170
HapII CCGG 3 cut(s) 135, 231, 396
HhaI GCGC 1 cut(s) 854
Hin1II CATG 7 cut(s) 569, 631, 658, 821, 828, 886, 895
Hin6I GCGC 1 cut(s) 852
HinP1I GCGC 1 cut(s) 852
HinfI GANTC 7 cut(s) 391, 621, 658, 680, 785, 1048, 1160
HpaII CCGG 3 cut(s) 135, 231, 396
HphI GGTGA 2 cut(s) 23, 269
Hpy166II GTNNAC 3 cut(s) 173, 475, 585
Hpy188I TCNGA 2 cut(s) 524, 966
Hpy188III TCNNGA 7 cut(s) 231, 425, 557, 566, 655, 677, 713
Hpy8I GTNNAC 3 cut(s) 173, 475, 585
Hpy99I CGWCG 1 cut(s) 470
HpyAV CCTTC 2 cut(s) 499, 1148
HpyCH4III ACNGT 3 cut(s) 355, 862, 1113
HpyCH4IV ACGT 2 cut(s) 358, 807
HpyCH4V TGCA 9 cut(s) 154, 173, 376, 821, 886, 908, 938, 1072, 1131
HpyF10VI GCNNNNNNNGC 4 cut(s) 96, 878, 1176, 1185
HpyF3I CTNAG 7 cut(s) 203, 293, 609, 693, 919, 963, 983
HpySE526I ACGT 2 cut(s) 358, 807
Hsp92II CATG 7 cut(s) 569, 631, 658, 821, 828, 886, 895
HspAI GCGC 1 cut(s) 852
Kpn2I TCCGGA 1 cut(s) 230
Ksp22I TGATCA 1 cut(s) 178
Kzo9I GATC 5 cut(s) 113, 178, 313, 979, 1024
LguI GCTCTTC 1 cut(s) 81
Lsp1109I GCAGC 1 cut(s) 698
LweI GCATC 5 cut(s) 163, 452, 762, 868, 925
MaeI CTAG 3 cut(s) 782, 929, 959
MaeII ACGT 2 cut(s) 358, 807
MaeIII GTNAC 2 cut(s) 864, 1161
MalI GATC 5 cut(s) 115, 180, 315, 981, 1026
MboI GATC 5 cut(s) 113, 178, 313, 979, 1024
MboII GAAGA 8 cut(s) 68, 299, 316, 396, 407, 663, 944, 1002
MhlI GDGCHC 1 cut(s) 175
MluCI AATT 6 cut(s) 33, 261, 435, 569, 708, 772
MlyI GAGTC 5 cut(s) 615, 652, 779, 1042, 1169
MmeI TCCRAC 1 cut(s) 1002
MnlI CCTC 9 cut(s) 205, 300, 354, 533, 730, 856, 980, 986, 1006
Mph1103I ATGCAT 2 cut(s) 888, 1133
MroI TCCGGA 1 cut(s) 230
MroXI GAANNNNTTC 2 cut(s) 403, 667
MseI TTAA 4 cut(s) 384, 590, 768, 1119
MslI CAYNNNNRTG 1 cut(s) 761
MspI CCGG 3 cut(s) 135, 231, 396
MspR9I CCNGG 4 cut(s) 107, 136, 396, 641
Mva1269I GAATGC 1 cut(s) 376
MvaI CCWGG 2 cut(s) 107, 641
MvnI CGCG 3 cut(s) 852, 854, 975
MwoI GCNNNNNNNGC 4 cut(s) 96, 878, 1176, 1185
NciI CCSGG 2 cut(s) 136, 396
NcoI CCATGG 2 cut(s) 824, 891
NdeI CATATG 1 cut(s) 1127
NdeII GATC 5 cut(s) 113, 178, 313, 979, 1024
NlaIII CATG 7 cut(s) 569, 631, 658, 821, 828, 886, 895
NlaIV GGNNCC 2 cut(s) 897, 956
NmuCI GTSAC 2 cut(s) 864, 1161
NsiI ATGCAT 2 cut(s) 888, 1133
PaeR7I CTCGAG 1 cut(s) 1050
PagI TCATGA 2 cut(s) 565, 654
PciSI GCTCTTC 1 cut(s) 81
PcsI WCGNNNNNNNCGW 1 cut(s) 1057
PctI GAATGC 1 cut(s) 376
PdmI GAANNNNTTC 2 cut(s) 403, 667
PfeI GAWTC 2 cut(s) 391, 680
PflFI GACNNNGTC 1 cut(s) 862
PfoI TCCNGGA 2 cut(s) 105, 394
PkrI GCNGC 4 cut(s) 56, 688, 925, 1190
PleI GAGTC 5 cut(s) 615, 652, 779, 1042, 1168
PpsI GAGTC 5 cut(s) 615, 652, 779, 1042, 1168
Ppu21I YACGTR 1 cut(s) 808
PpuMI RGGWCCY 1 cut(s) 896
Psp5II RGGWCCY 1 cut(s) 896
Psp6I CCWGG 2 cut(s) 105, 639
PspGI CCWGG 2 cut(s) 105, 639
PspN4I GGNNCC 2 cut(s) 897, 956
PspPI GGNCC 3 cut(s) 103, 697, 896
PspPPI RGGWCCY 1 cut(s) 896
PspXI VCTCGAGB 1 cut(s) 1050
PsyI GACNNNGTC 1 cut(s) 862
RsaI GTAC 2 cut(s) 357, 806
RsaNI GTAC 2 cut(s) 356, 805
RseI CAYNNNNRTG 1 cut(s) 761
SapI GCTCTTC 1 cut(s) 81
SaqAI TTAA 4 cut(s) 384, 590, 768, 1119
SatI GCNGC 4 cut(s) 55, 687, 924, 1189
Sau3AI GATC 5 cut(s) 113, 178, 313, 979, 1024
Sau96I GGNCC 3 cut(s) 103, 697, 896
SchI GAGTC 5 cut(s) 615, 652, 779, 1042, 1169
ScrFI CCNGG 4 cut(s) 107, 136, 396, 641
SduI GDGCHC 1 cut(s) 175
SfaNI GCATC 5 cut(s) 163, 452, 762, 868, 925
Sfr274I CTCGAG 1 cut(s) 1050
SinI GGWCC 3 cut(s) 103, 697, 896
SlaI CTCGAG 1 cut(s) 1050
SmiMI CAYNNNNRTG 1 cut(s) 761
SmlI CTYRAG 2 cut(s) 675, 1050
SmoI CTYRAG 2 cut(s) 675, 1050
Sse9I AATT 6 cut(s) 33, 261, 435, 569, 708, 772
SsiI CCGC 6 cut(s) 54, 854, 872, 924, 1177, 1188
SspI AATATT 1 cut(s) 517
SspMI CTAG 3 cut(s) 782, 929, 959
StyD4I CCNGG 4 cut(s) 105, 134, 394, 639
StyI CCWWGG 3 cut(s) 447, 824, 891
TaaI ACNGT 3 cut(s) 355, 862, 1113
TaiI ACGT 2 cut(s) 361, 810
TaqI TCGA 2 cut(s) 661, 1051
TaqII GACCGA 1 cut(s) 647
TasI AATT 6 cut(s) 33, 261, 435, 569, 708, 772
TauI GCSGC 3 cut(s) 57, 926, 1191
TfiI GAWTC 2 cut(s) 391, 680
Tru1I TTAA 4 cut(s) 384, 590, 768, 1119
Tru9I TTAA 4 cut(s) 384, 590, 768, 1119
TscAI CASTG 3 cut(s) 70, 358, 873
TseFI GTSAC 2 cut(s) 864, 1161
TseI GCWGC 1 cut(s) 686
Tsp45I GTSAC 2 cut(s) 864, 1161
TspDTI ATGAA 5 cut(s) 518, 582, 643, 1088, 1095
TspGWI ACGGA 1 cut(s) 483
TspRI CASTG 3 cut(s) 70, 358, 873
Tth111I GACNNNGTC 1 cut(s) 862
VneI GTGCAC 1 cut(s) 171
VpaK11BI GGWCC 3 cut(s) 103, 697, 896
XapI RAATTY 1 cut(s) 569
XcmI CCANNNNNNNNNTGG 1 cut(s) 889
XhoI CTCGAG 1 cut(s) 1050
XmnI GAANNNNTTC 2 cut(s) 403, 667
XspI CTAG 3 cut(s) 782, 929, 959
Zsp2I ATGCAT 2 cut(s) 888, 1133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.