Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0002765

Physical Location & Seq

Genomic Coordinates Forward (+)

4447152 .. 4448598

Gene Structure 1447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g03910.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGAAGATGAGTACAAATATGGAGATGGCAGAGGATGCAGGAGAAAATATTGTGATTGTGGGTGGTGGGATTTGCGGCCTTGCCACTGCTCTTGCTCTTCACAGGAAGGGCATAAGAAGCTTGGTCTTAGAAAGATCAGAGAGTCTGCGAGCAACGGGAGCGGCTATCATTCTTCATGCTAACGGATGGCGTGCACTTGATCAACTTGGTGTTGCCTCCTCTCTCAGACAAACTAGTATTCCTATTCTATCGGCACAATTCACCTCACTTGATGATGACAGGCTACAACAAATACCAGTTTGGAAAGATGAGTTACGATGTGTGAAAAGGACTGATCTGATGAATATCTTGGCTGATAATTTGCCACAAAACACTATACGTTTTGGGTGCTATGTACTCTCTATCGAGTTGGATCCCATCATTTCTTCTCCAGTTCTTAAACTTCAAGATGGAACCAGTTTGAATGCCAAGGTTGTGATCGGATGTGATGGACTGAACTCGATGATTTCATACATGTTGGGGGTGAGGCCTACAAATACATTTAATGTCTGTGTTATTAGAGGTTTCACAAGTTGTCCGAGTGGTCATGAATTCGGTAGTGAGTTCAAGATGGCCAAAAAAGATGATGTTCAAGTTGGACTAATTCCCATGACCACCAGCCTGGTTTATTGGTTCGTCACTGGCAAATATATTTCTCAAAAGTTCAAGGTCTCCCAGAGCAAGAAACTAATCGGGGACATGGCAGCTGCATCAATGAAGGACTTCAAGAGATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_3

Protein Analysis

259

Amino Acids

28.22

Weight (kDa)

8.88

Isoelectric Point (pI)

43.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_3	PF01494	17 - 219	2.7e-18	FAD binding domain
DAO	PF01266	17 - 64	4e-07	FAD dependent oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002765)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15760 AT4G15760
fragaria_vesca	FvH4_7g03910
malus_domestica	MD07G1043700.v1.1 MD10G1041900.v1.1 MD10G1042000.v1.1
prunus_persica	Prupe.2G043900_v2.0.a1 Prupe.8G046000_v2.0.a1 Prupe.8G046000_v2.0.a1 Prupe.8G046000_v2.0.a1 Prupe.8G046000_v2.0.a1 Prupe.8G046000_v2.0.a1
pyrus_communis	pycom10g02900 pycom10g02910
rosa_chinensis	RchiOBHm_Chr1g0327481 RchiOBHm_Chr1g0327491 RchiOBHm_Chr2g0087851
rosa_laevigata	RLG00000015907 RLG00000029990
rosa_multiflora	Rmu_sc0003600.1_g000007 Rmu_sc0008385.1_g000017 Rmu_ssc0000042.1_g000053
rosa_roxburghii	Rroxscaffold_2G00151770 Rroxscaffold_2G00153170 Rroxscaffold_4G00322630
rosa_rugosa	Rorug01G0067300 Rorug01G0479000
rosa_samantha	Rh1AG084300 Rh1BG067000 Rh1CG082000 Rh1CG082100 Rh1DG088600 Rh1DG088700 Rh2AG033600 Rh2BG032800 Rh2CG033500 Rh2DG033200
rosa_wichuraiana	Rw1G006630 Rw2G002620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	161
AciI	CCGC	2 cut(s)	75, 161
AclWI	GGATC	2 cut(s)	407, 420
AcoI	YGGCCR	1 cut(s)	612
AcsI	RAATTY	1 cut(s)	590
AfaI	GTAC	2 cut(s)	13, 396
AflIII	ACRYGT	1 cut(s)	513
AgsI	TTSAA	6 cut(s)	446, 463, 607, 632, 706, 766
AhlI	ACTAGT	1 cut(s)	233
AjnI	CCWGG	1 cut(s)	660
AluBI	AGCT	2 cut(s)	120, 746
AluI	AGCT	2 cut(s)	120, 746
Alw21I	GWGCWC	1 cut(s)	196
Alw26I	GTCTC	1 cut(s)	715
Alw44I	GTGCAC	1 cut(s)	192
AlwI	GGATC	2 cut(s)	407, 420
AoxI	GGCC	3 cut(s)	76, 527, 612
ApaLI	GTGCAC	1 cut(s)	192
ApeKI	GCWGC	2 cut(s)	743, 746
ApoI	RAATTY	1 cut(s)	590
Asp700I	GAANNNNTTC	1 cut(s)	761
AsuHPI	GGTGA	2 cut(s)	253, 535
BaeGI	GKGCMC	1 cut(s)	196
BalI	TGGCCA	1 cut(s)	614
BamHI	GGATCC	1 cut(s)	412
Bbv12I	GWGCWC	1 cut(s)	196
BbvI	GCAGC	2 cut(s)	733, 755
BccI	CCATC	6 cut(s)	19, 180, 425, 443, 482, 604
BciT130I	CCWGG	1 cut(s)	662
BclI	TGATCA	1 cut(s)	199
BcoDI	GTCTC	1 cut(s)	715
BcuI	ACTAGT	1 cut(s)	233
BfaI	CTAG	1 cut(s)	234
BisI	GCNGC	4 cut(s)	76, 162, 744, 747
BlsI	GCNGC	4 cut(s)	77, 163, 745, 748
Bme1390I	CCNGG	1 cut(s)	662
BmiI	GGNNCC	2 cut(s)	414, 454
BmrFI	CCNGG	1 cut(s)	662
BmsI	GCATC	2 cut(s)	25, 758
BpmI	CTGGAG	1 cut(s)	414
BsaBI	GATNNNNATC	1 cut(s)	344
BsaI	GGTCTC	1 cut(s)	715
BsaJI	CCNNGG	1 cut(s)	468
Bse1I	ACTGG	4 cut(s)	296, 431, 456, 685
Bse8I	GATNNNNATC	1 cut(s)	344
BseBI	CCWGG	1 cut(s)	662
BseDI	CCNNGG	1 cut(s)	468
BseGI	GGATG	3 cut(s)	40, 191, 488
BseJI	GATNNNNATC	1 cut(s)	344
BseMII	CTCAG	1 cut(s)	238
BseNI	ACTGG	4 cut(s)	296, 431, 456, 685
BseRI	GAGGAG	1 cut(s)	208
BseSI	GKGCMC	1 cut(s)	196
BseXI	GCAGC	2 cut(s)	733, 755
BshFI	GGCC	3 cut(s)	78, 529, 614
BsiHKAI	GWGCWC	1 cut(s)	196
BslFI	GGGAC	1 cut(s)	749
BsmAI	GTCTC	1 cut(s)	715
BsmFI	GGGAC	1 cut(s)	749
BsmI	GAATGC	1 cut(s)	469
BsnI	GGCC	3 cut(s)	78, 529, 614
Bso31I	GGTCTC	1 cut(s)	715
Bsp1286I	GDGCHC	1 cut(s)	196
Bsp143I	GATC	6 cut(s)	134, 199, 334, 412, 477, 770
BspACI	CCGC	2 cut(s)	75, 161
BspANI	GGCC	3 cut(s)	78, 529, 614
BspCNI	CTCAG	1 cut(s)	237
BspHI	TCATGA	1 cut(s)	586
BspLI	GGNNCC	2 cut(s)	414, 454
BspPI	GGATC	2 cut(s)	407, 420
BspQI	GCTCTTC	1 cut(s)	102
BspTNI	GGTCTC	1 cut(s)	715
BsrBI	CCGCTC	1 cut(s)	161
BsrI	ACTGG	4 cut(s)	296, 431, 456, 685
BssECI	CCNNGG	1 cut(s)	468
BssMI	GATC	6 cut(s)	134, 199, 334, 412, 477, 770
BssT1I	CCWWGG	1 cut(s)	468
Bst2UI	CCWGG	1 cut(s)	662
Bst6I	CTCTTC	1 cut(s)	102
BstAPI	GCANNNNNTGC	1 cut(s)	35
BstC8I	GCNNGC	2 cut(s)	150, 192
BstDEI	CTNAG	2 cut(s)	127, 224
BstF5I	GGATG	3 cut(s)	40, 191, 488
BstKTI	GATC	6 cut(s)	137, 202, 337, 415, 480, 773
BstMAI	GTCTC	1 cut(s)	715
BstMBI	GATC	6 cut(s)	134, 199, 334, 412, 477, 770
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 117, 158
BstNI	CCWGG	1 cut(s)	662
BstNSI	RCATGY	1 cut(s)	517
BstSCI	CCNGG	1 cut(s)	660
BstSLI	GKGCMC	1 cut(s)	196
BstV1I	GCAGC	2 cut(s)	733, 755
BstX2I	RGATCY	1 cut(s)	412
BstXI	CCANNNNNNTGG	1 cut(s)	661
BstYI	RGATCY	1 cut(s)	412
BsuRI	GGCC	3 cut(s)	78, 529, 614
BtsCI	GGATG	3 cut(s)	40, 191, 488
BtsI	GCAGTG	1 cut(s)	84
BtsIMutI	CAGTG	2 cut(s)	84, 678
Cac8I	GCNNGC	2 cut(s)	150, 192
CciI	TCATGA	1 cut(s)	586
Csp6I	GTAC	2 cut(s)	12, 395
CspCI	CAANNNNNGTGG	2 cut(s)	73, 108
CviAII	CATG	5 cut(s)	176, 514, 587, 649, 739
CviJI	RGCY	9 cut(s)	78, 120, 164, 283, 353, 529, 614, 660, 746
CviKI_1	RGCY	9 cut(s)	78, 120, 164, 283, 353, 529, 614, 660, 746
CviQI	GTAC	2 cut(s)	12, 395
DdeI	CTNAG	2 cut(s)	127, 224
DpnI	GATC	6 cut(s)	136, 201, 336, 414, 479, 772
DpnII	GATC	6 cut(s)	134, 199, 334, 412, 477, 770
EaeI	YGGCCR	1 cut(s)	612
Eam1104I	CTCTTC	1 cut(s)	102
EarI	CTCTTC	1 cut(s)	102
Eco130I	CCWWGG	1 cut(s)	468
Eco147I	AGGCCT	1 cut(s)	529
Eco31I	GGTCTC	1 cut(s)	715
EcoRI	GAATTC	1 cut(s)	590
EcoRII	CCWGG	1 cut(s)	660
EcoT14I	CCWWGG	1 cut(s)	468
ErhI	CCWWGG	1 cut(s)	468
FaeI	CATG	5 cut(s)	179, 517, 590, 652, 742
FaqI	GGGAC	1 cut(s)	749
FatI	CATG	5 cut(s)	175, 513, 586, 648, 738
FbaI	TGATCA	1 cut(s)	199
Fnu4HI	GCNGC	4 cut(s)	76, 162, 744, 747
FokI	GGATG	3 cut(s)	47, 198, 495
Fsp4HI	GCNGC	4 cut(s)	76, 162, 744, 747
FspBI	CTAG	1 cut(s)	234
GluI	GCNGC	4 cut(s)	76, 162, 744, 747
GsuI	CTGGAG	1 cut(s)	414
HaeIII	GGCC	3 cut(s)	78, 529, 614
Hin1II	CATG	5 cut(s)	179, 517, 590, 652, 742
HindIII	AAGCTT	1 cut(s)	118
HinfI	GANTC	1 cut(s)	142
HphI	GGTGA	2 cut(s)	253, 535
Hpy166II	GTNNAC	1 cut(s)	194
Hpy188I	TCNGA	5 cut(s)	139, 227, 339, 482, 579
Hpy188III	TCNNGA	4 cut(s)	446, 587, 607, 766
Hpy8I	GTNNAC	1 cut(s)	194
HpyAV	CCTTC	2 cut(s)	100, 751
HpyCH4IV	ACGT	1 cut(s)	379
HpyCH4V	TGCA	3 cut(s)	38, 194, 749
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 117, 158
HpyF3I	CTNAG	2 cut(s)	127, 224
HpySE526I	ACGT	1 cut(s)	379
Hsp92II	CATG	5 cut(s)	179, 517, 590, 652, 742
Ksp22I	TGATCA	1 cut(s)	199
Kzo9I	GATC	6 cut(s)	134, 199, 334, 412, 477, 770
LguI	GCTCTTC	1 cut(s)	102
LmnI	GCTCC	1 cut(s)	158
Lsp1109I	GCAGC	2 cut(s)	733, 755
LweI	GCATC	2 cut(s)	25, 758
MaeI	CTAG	1 cut(s)	234
MaeII	ACGT	1 cut(s)	379
MaeIII	GTNAC	2 cut(s)	312, 676
MalI	GATC	6 cut(s)	136, 201, 336, 414, 479, 772
MbiI	CCGCTC	1 cut(s)	161
MboI	GATC	6 cut(s)	134, 199, 334, 412, 477, 770
MboII	GAAGA	4 cut(s)	16, 89, 164, 417
MflI	RGATCY	1 cut(s)	412
MhlI	GDGCHC	1 cut(s)	196
MlsI	TGGCCA	1 cut(s)	614
MluCI	AATT	4 cut(s)	257, 358, 590, 642
MluNI	TGGCCA	1 cut(s)	614
MlyI	GAGTC	1 cut(s)	151
MmeI	TCCRAC	2 cut(s)	390, 616
MnlI	CCTC	6 cut(s)	25, 226, 229, 274, 519, 554
Mox20I	TGGCCA	1 cut(s)	614
MroXI	GAANNNNTTC	1 cut(s)	761
MscI	TGGCCA	1 cut(s)	614
MseI	TTAA	2 cut(s)	438, 543
Msp20I	TGGCCA	1 cut(s)	614
MspA1I	CMGCKG	1 cut(s)	746
MspR9I	CCNGG	1 cut(s)	662
Mva1269I	GAATGC	1 cut(s)	469
MvaI	CCWGG	1 cut(s)	662
MwoI	GCNNNNNNNGC	3 cut(s)	35, 117, 158
NdeII	GATC	6 cut(s)	134, 199, 334, 412, 477, 770
NlaIII	CATG	5 cut(s)	179, 517, 590, 652, 742
NlaIV	GGNNCC	2 cut(s)	414, 454
NmuCI	GTSAC	1 cut(s)	676
NspI	RCATGY	1 cut(s)	517
PagI	TCATGA	1 cut(s)	586
PceI	AGGCCT	1 cut(s)	529
PciI	ACATGT	1 cut(s)	513
PciSI	GCTCTTC	1 cut(s)	102
PctI	GAATGC	1 cut(s)	469
PdmI	GAANNNNTTC	1 cut(s)	761
PkrI	GCNGC	4 cut(s)	77, 163, 745, 748
PleI	GAGTC	1 cut(s)	150
PpsI	GAGTC	1 cut(s)	150
PscI	ACATGT	1 cut(s)	513
Psp6I	CCWGG	1 cut(s)	660
PspGI	CCWGG	1 cut(s)	660
PspN4I	GGNNCC	2 cut(s)	414, 454
PsuI	RGATCY	1 cut(s)	412
PvuII	CAGCTG	1 cut(s)	746
RsaI	GTAC	2 cut(s)	13, 396
RsaNI	GTAC	2 cut(s)	12, 395
SapI	GCTCTTC	1 cut(s)	102
SaqAI	TTAA	2 cut(s)	438, 543
SatI	GCNGC	4 cut(s)	76, 162, 744, 747
Sau3AI	GATC	6 cut(s)	134, 199, 334, 412, 477, 770
SchI	GAGTC	1 cut(s)	151
ScrFI	CCNGG	1 cut(s)	662
SduI	GDGCHC	1 cut(s)	196
SetI	ASST	7 cut(s)	122, 266, 382, 474, 565, 711, 748
SfaNI	GCATC	2 cut(s)	25, 758
SpeI	ACTAGT	1 cut(s)	233
Sse9I	AATT	4 cut(s)	257, 358, 590, 642
SseBI	AGGCCT	1 cut(s)	529
SsiI	CCGC	2 cut(s)	75, 161
SspI	AATATT	1 cut(s)	49
SspMI	CTAG	1 cut(s)	234
StuI	AGGCCT	1 cut(s)	529
StyD4I	CCNGG	1 cut(s)	660
StyI	CCWWGG	1 cut(s)	468
TaiI	ACGT	1 cut(s)	382
TaqI	TCGA	2 cut(s)	405, 500
TasI	AATT	4 cut(s)	257, 358, 590, 642
TatI	WGTACW	2 cut(s)	11, 394
TauI	GCSGC	2 cut(s)	78, 164
Tru1I	TTAA	2 cut(s)	438, 543
Tru9I	TTAA	2 cut(s)	438, 543
TscAI	CASTG	2 cut(s)	91, 685
TseFI	GTSAC	1 cut(s)	676
TseI	GCWGC	2 cut(s)	743, 746
Tsp45I	GTSAC	1 cut(s)	676
TspDTI	ATGAA	6 cut(s)	17, 164, 356, 498, 603, 770
TspGWI	ACGGA	1 cut(s)	198
TspRI	CASTG	2 cut(s)	91, 685
VneI	GTGCAC	1 cut(s)	192
XapI	RAATTY	1 cut(s)	590
XceI	RCATGY	1 cut(s)	517
XmnI	GAANNNNTTC	1 cut(s)	761
XspI	CTAG	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.