RchiOBHm_Chr1g0327491

FAD binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0002765
Physical Location & Seq
Forward (+)
16336693 .. 16340373
3681 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55699

Sequence Viewer

Length: 1293 bp
ATGCTAGTTAATAGGTCACCATTTCCAGTTTTATATAAAATGCACAAGAAGCAAACTAGATCAAAGCAAAAGCAGATGGTTAAGGATATGGACATGGCAGGGGATAGGAGAGAAGATGTTGTGATTGTGGGTGGTGGGATTTCCGGCCTCGCCACTGCTCTTGCTCTTTACAGAAAGGGCATAAGAAGCTTGGTCCTAGAAAAATCAAAGACTTTACAAGCCACCGGAGGTATCATTGTGCATTCTAATGGTTGGCGTGCCCTTGAACAGCTCGGTGTAGCCTCATATCTTAGACAAACTGCTGATCCTATACTATCGGGACAATTCTCTTCACTTGATAATGGTAAGCAGGAAGAAATTCCCATTTGGAAAGAAGAAATGCGATGTGTAAGAAGGACCGATCTGGTTAATATTTTGGCTCAAAATCTGCCACTCGAAACTGTACGTTATGGCTGCAACGTACTTTCGATTGAGTTGGATCCTGTAACATCTTATCCAGTTCTTCAACTTCAAAATGGAACTACATTGAACGCCAAGGTTGTGATCGGATGTGACGGAGTGAACTCCAAGATAACAAATCTGACTGGGGCGAAGGCGCCAAATAGACTCAATGTAATTGGAGTAAGAAGCTTTACAATTTATCCAAATGGCCACAAATTCGGCAGTGAGTTTAAGATGATAAGAAAAGGTGATGTTACGGTCGGAGTAATACCCATGACCACCAACCAGGTTCATTGGTTCATCACTAGAAAATATCTTTCACAAGAAGGTTTCAAGATCTCCAAAAGTCCGAAATTGATTATGAACTTCTCAACTGAGTCAGTGAAGGATTTTCCTAGTAGCGTTAAAGAGATGGTCAACAATTGCTGGCTCGAGTGTTTACATTTCTCAGAGTACATCAAATATCGATCACCATGGAACATACTATGTACACACTTTCGGGTAGGAACAGTGACAGTTGCAGGAGATGCCTTGCATGCAATGACTCCGTTCATTGCTCAGGGTGGCTCAGCCGCTTTGGAAGACGCAGTTGTCCTTGCTAGGTGCTTCGCACGAAAGGCTGTCGTCGGTGGTCCAGGTGAAATAGGAAGCAAACTTATGGTAGAGAAAGCATTTGATGAATACCTAAAAGAGCGGAAAACACGACTTCTAAGACTTACTTTCGAATCGACCCTACTCGGAAAGATGGAAGAAACTTCATCAAAGCTCATCAAGCTCTTATGTATTGTGCTCATGGTGGTCCTATTTCGCGACTTGTTTGCTCACACTCGCTATGACTGTGGCAAACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3

Protein Analysis

430

Amino Acids

48.0

Weight (kDa)

9.52

Isoelectric Point (pI)

42.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 39 - 351 7.7e-26 FAD binding domain
DAO PF01266 39 - 75 1.3e-07 FAD dependent oxidoreductase
Lycopene_cycl PF05834 39 - 190 9.9e-06 Lycopene cyclase protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1031
AccB1I GGYRCC 1 cut(s) 595
AccBSI CCGCTC 1 cut(s) 1135
AccII CGCG 1 cut(s) 1251
AciI CCGC 2 cut(s) 1014, 1135
AclWI GGATC 3 cut(s) 299, 473, 486
AcoI YGGCCR 1 cut(s) 649
AcsI RAATTY 2 cut(s) 357, 656
AcyI GRCGYC 1 cut(s) 596
AfaI GTAC 4 cut(s) 444, 462, 896, 931
AgsI TTSAA 5 cut(s) 266, 506, 512, 529, 775
AjnI CCWGG 2 cut(s) 726, 1075
AluBI AGCT 5 cut(s) 189, 271, 630, 1207, 1216
AluI AGCT 5 cut(s) 189, 271, 630, 1207, 1216
Alw21I GWGCWC 1 cut(s) 1233
AlwI GGATC 3 cut(s) 299, 473, 486
Ama87I CYCGRG 1 cut(s) 872
AoxI GGCC 2 cut(s) 145, 649
ApeKI GCWGC 1 cut(s) 453
ApoI RAATTY 2 cut(s) 357, 656
Asp700I GAANNNNTTC 1 cut(s) 357
AspLEI GCGC 1 cut(s) 598
AspS9I GGNCC 4 cut(s) 193, 396, 1073, 1240
AsuHPI GGTGA 4 cut(s) 9, 701, 903, 1091
AsuII TTCGAA 1 cut(s) 1164
AvaI CYCGRG 1 cut(s) 872
AvaII GGWCC 4 cut(s) 193, 396, 1073, 1240
BaeGI GKGCMC 1 cut(s) 262
BalI TGGCCA 1 cut(s) 651
BamHI GGATCC 1 cut(s) 478
BanI GGYRCC 1 cut(s) 595
BbsI GAAGAC 1 cut(s) 1029
Bbv12I GWGCWC 1 cut(s) 1233
BbvI GCAGC 1 cut(s) 440
BccI CCATC 3 cut(s) 70, 847, 1180
BcgI CGANNNNNNTGC 2 cut(s) 1241, 1275
BciT130I CCWGG 2 cut(s) 728, 1077
BfaI CTAG 6 cut(s) 5, 57, 197, 747, 837, 1041
BfoI RGCGCY 1 cut(s) 599
BglII AGATCT 1 cut(s) 777
BisI GCNGC 2 cut(s) 454, 1014
BlpI GCTNAGC 1 cut(s) 1009
BlsI GCNGC 2 cut(s) 455, 1015
Bme1390I CCNGG 2 cut(s) 728, 1077
Bme18I GGWCC 4 cut(s) 193, 396, 1073, 1240
BmeT110I CYCGRG 1 cut(s) 872
BmgT120I GGNCC 4 cut(s) 193, 396, 1073, 1240
BmiI GGNNCC 2 cut(s) 480, 597
BmrFI CCNGG 2 cut(s) 728, 1077
BmrI ACTGGG 1 cut(s) 594
BmsI GCATC 1 cut(s) 958
BmuI ACTGGG 1 cut(s) 594
BpiI GAAGAC 1 cut(s) 1029
Bpu10I CCTNAGC 1 cut(s) 999
Bpu1102I GCTNAGC 1 cut(s) 1009
Bpu14I TTCGAA 1 cut(s) 1164
Bsa29I ATCGAT 1 cut(s) 907
BsaHI GRCGYC 1 cut(s) 596
BsaJI CCNNGG 2 cut(s) 534, 914
BsaWI WCCGGW 1 cut(s) 224
Bse1I ACTGG 3 cut(s) 26, 497, 589
Bse3DI GCAATG 2 cut(s) 987, 993
BseBI CCWGG 2 cut(s) 728, 1077
BseCI ATCGAT 1 cut(s) 907
BseDI CCNNGG 2 cut(s) 534, 914
BseGI GGATG 1 cut(s) 554
BseMI GCAATG 2 cut(s) 987, 993
BseMII CTCAG 4 cut(s) 807, 903, 1013, 1023
BseNI ACTGG 3 cut(s) 26, 497, 589
BseSI GKGCMC 1 cut(s) 262
BseXI GCAGC 1 cut(s) 440
Bsh1236I CGCG 1 cut(s) 1251
Bsh1285I CGRYCG 1 cut(s) 702
BshFI GGCC 2 cut(s) 147, 651
BshNI GGYRCC 1 cut(s) 595
BshVI ATCGAT 1 cut(s) 907
BsiEI CGRYCG 1 cut(s) 702
BsiHKAI GWGCWC 1 cut(s) 1233
BsiHKCI CYCGRG 1 cut(s) 872
BsiSI CCGG 2 cut(s) 144, 225
BslFI GGGAC 1 cut(s) 333
BsmFI GGGAC 1 cut(s) 333
BsmI GAATGC 1 cut(s) 241
BsnI GGCC 2 cut(s) 147, 651
BsoBI CYCGRG 1 cut(s) 872
Bsp119I TTCGAA 1 cut(s) 1164
Bsp1286I GDGCHC 2 cut(s) 262, 1233
Bsp1407I TGTACA 1 cut(s) 929
Bsp143I GATC 7 cut(s) 59, 304, 400, 478, 543, 777, 908
Bsp1720I GCTNAGC 1 cut(s) 1009
Bsp19I CCATGG 1 cut(s) 914
Bsp68I TCGCGA 1 cut(s) 1251
BspACI CCGC 2 cut(s) 1014, 1135
BspANI GGCC 2 cut(s) 147, 651
BspCNI CTCAG 4 cut(s) 808, 902, 1012, 1022
BspDI ATCGAT 1 cut(s) 907
BspFNI CGCG 1 cut(s) 1251
BspLI GGNNCC 2 cut(s) 480, 597
BspPI GGATC 3 cut(s) 299, 473, 486
BspT104I TTCGAA 1 cut(s) 1164
BspT107I GGYRCC 1 cut(s) 595
BsrBI CCGCTC 1 cut(s) 1135
BsrDI GCAATG 2 cut(s) 987, 993
BsrGI TGTACA 1 cut(s) 929
BsrI ACTGG 3 cut(s) 26, 497, 589
BssECI CCNNGG 2 cut(s) 534, 914
BssMI GATC 7 cut(s) 59, 304, 400, 478, 543, 777, 908
BssNI GRCGYC 1 cut(s) 596
BssT1I CCWWGG 2 cut(s) 534, 914
Bst2UI CCWGG 2 cut(s) 728, 1077
Bst4CI ACNGT 5 cut(s) 442, 700, 952, 958, 1280
Bst6I CTCTTC 1 cut(s) 334
BstACI GRCGYC 1 cut(s) 596
BstAPI GCANNNNNTGC 1 cut(s) 968
BstAUI TGTACA 1 cut(s) 929
BstBI TTCGAA 1 cut(s) 1164
BstC8I GCNNGC 3 cut(s) 258, 869, 978
BstDEI CTNAG 6 cut(s) 290, 816, 889, 999, 1009, 1151
BstDSI CCRYGG 1 cut(s) 914
BstEII GGTNACC 1 cut(s) 15
BstF5I GGATG 1 cut(s) 554
BstFNI CGCG 1 cut(s) 1251
BstH2I RGCGCY 1 cut(s) 599
BstHHI GCGC 1 cut(s) 598
BstKTI GATC 7 cut(s) 62, 307, 403, 481, 546, 780, 911
BstMBI GATC 7 cut(s) 59, 304, 400, 478, 543, 777, 908
BstMCI CGRYCG 1 cut(s) 702
BstMWI GCNNNNNNNGC 6 cut(s) 49, 186, 968, 977, 1058, 1213
BstNI CCWGG 2 cut(s) 728, 1077
BstNSI RCATGY 1 cut(s) 980
BstPI GGTNACC 1 cut(s) 15
BstSCI CCNGG 2 cut(s) 726, 1075
BstSLI GKGCMC 1 cut(s) 262
BstUI CGCG 1 cut(s) 1251
BstV1I GCAGC 1 cut(s) 440
BstV2I GAAGAC 1 cut(s) 1029
BstX2I RGATCY 2 cut(s) 478, 777
BstYI RGATCY 2 cut(s) 478, 777
Bsu15I ATCGAT 1 cut(s) 907
BsuRI GGCC 2 cut(s) 147, 651
BsuTUI ATCGAT 1 cut(s) 907
BtgI CCRYGG 1 cut(s) 914
BtgZI GCGATG 1 cut(s) 397
BtsCI GGATG 1 cut(s) 554
BtsI GCAGTG 2 cut(s) 153, 670
BtsIMutI CAGTG 4 cut(s) 153, 670, 828, 957
BtuMI TCGCGA 1 cut(s) 1251
Cac8I GCNNGC 3 cut(s) 258, 869, 978
CfoI GCGC 1 cut(s) 598
Cfr13I GGNCC 4 cut(s) 193, 396, 1073, 1240
ClaI ATCGAT 1 cut(s) 907
CseI GACGC 1 cut(s) 1034
CsiI ACCWGGT 1 cut(s) 726
Csp6I GTAC 4 cut(s) 443, 461, 895, 930
CspCI CAANNNNNGTGG 2 cut(s) 142, 177
CviAII CATG 5 cut(s) 94, 715, 915, 977, 1234
CviQI GTAC 4 cut(s) 443, 461, 895, 930
DdeI CTNAG 6 cut(s) 290, 816, 889, 999, 1009, 1151
DinI GGCGCC 1 cut(s) 597
DpnI GATC 7 cut(s) 61, 306, 402, 480, 545, 779, 910
DpnII GATC 7 cut(s) 59, 304, 400, 478, 543, 777, 908
DrdI GACNNNNNNGTC 1 cut(s) 1031
DseDI GACNNNNNNGTC 1 cut(s) 1031
EaeI YGGCCR 1 cut(s) 649
Eam1104I CTCTTC 1 cut(s) 334
EarI CTCTTC 1 cut(s) 334
Eco130I CCWWGG 2 cut(s) 534, 914
Eco47I GGWCC 4 cut(s) 193, 396, 1073, 1240
Eco88I CYCGRG 1 cut(s) 872
Eco91I GGTNACC 1 cut(s) 15
EcoO65I GGTNACC 1 cut(s) 15
EcoRII CCWGG 2 cut(s) 726, 1075
EcoT14I CCWWGG 2 cut(s) 534, 914
EgeI GGCGCC 1 cut(s) 597
EheI GGCGCC 1 cut(s) 597
ErhI CCWWGG 2 cut(s) 534, 914
FaeI CATG 5 cut(s) 97, 718, 918, 980, 1237
FalI AAGNNNNNCTT 2 cut(s) 1144, 1176
FaqI GGGAC 1 cut(s) 333
FatI CATG 5 cut(s) 93, 714, 914, 976, 1233
Fnu4HI GCNGC 2 cut(s) 454, 1014
FokI GGATG 1 cut(s) 561
Fsp4HI GCNGC 2 cut(s) 454, 1014
FspBI CTAG 6 cut(s) 5, 57, 197, 747, 837, 1041
GlaI GCGC 1 cut(s) 597
GluI GCNGC 2 cut(s) 454, 1014
HaeII RGCGCY 1 cut(s) 599
HaeIII GGCC 2 cut(s) 147, 651
HapII CCGG 2 cut(s) 144, 225
HgaI GACGC 1 cut(s) 1034
HhaI GCGC 1 cut(s) 598
Hin1I GRCGYC 1 cut(s) 596
Hin1II CATG 5 cut(s) 97, 718, 918, 980, 1237
Hin6I GCGC 1 cut(s) 596
HinP1I GCGC 1 cut(s) 596
HincII GTYRAC 1 cut(s) 859
HindII GTYRAC 1 cut(s) 859
HindIII AAGCTT 2 cut(s) 187, 628
HinfI GANTC 4 cut(s) 606, 818, 985, 1166
HpaII CCGG 2 cut(s) 144, 225
HphI GGTGA 4 cut(s) 9, 701, 903, 1091
Hpy166II GTNNAC 4 cut(s) 562, 859, 881, 932
Hpy188I TCNGA 6 cut(s) 548, 582, 704, 792, 892, 1181
Hpy188III TCNNGA 3 cut(s) 318, 775, 1250
Hpy8I GTNNAC 4 cut(s) 562, 859, 881, 932
Hpy99I CGWCG 1 cut(s) 1070
HpyAV CCTTC 4 cut(s) 387, 586, 761, 820
HpyCH4III ACNGT 5 cut(s) 442, 700, 952, 958, 1280
HpyCH4IV ACGT 2 cut(s) 445, 459
HpyCH4V TGCA 6 cut(s) 43, 241, 456, 962, 976, 980
HpyF10VI GCNNNNNNNGC 6 cut(s) 49, 186, 968, 977, 1058, 1213
HpyF3I CTNAG 6 cut(s) 290, 816, 889, 999, 1009, 1151
HpySE526I ACGT 2 cut(s) 445, 459
Hsp92I GRCGYC 1 cut(s) 596
Hsp92II CATG 5 cut(s) 97, 718, 918, 980, 1237
HspAI GCGC 1 cut(s) 596
KasI GGCGCC 1 cut(s) 595
Kzo9I GATC 7 cut(s) 59, 304, 400, 478, 543, 777, 908
Lsp1109I GCAGC 1 cut(s) 440
LweI GCATC 1 cut(s) 958
MabI ACCWGGT 1 cut(s) 726
MaeI CTAG 6 cut(s) 5, 57, 197, 747, 837, 1041
MaeII ACGT 2 cut(s) 445, 459
MaeIII GTNAC 5 cut(s) 15, 484, 551, 694, 952
MalI GATC 7 cut(s) 61, 306, 402, 480, 545, 779, 910
MbiI CCGCTC 1 cut(s) 1135
MboI GATC 7 cut(s) 59, 304, 400, 478, 543, 777, 908
MboII GAAGA 7 cut(s) 125, 321, 365, 386, 494, 1034, 1202
MfeI CAATTG 1 cut(s) 862
MflI RGATCY 2 cut(s) 478, 777
MhlI GDGCHC 2 cut(s) 262, 1233
MlsI TGGCCA 1 cut(s) 651
MluCI AATT 7 cut(s) 323, 357, 615, 636, 656, 794, 862
MluNI TGGCCA 1 cut(s) 651
Mly113I GGCGCC 1 cut(s) 596
MlyI GAGTC 3 cut(s) 600, 827, 979
MmeI TCCRAC 2 cut(s) 456, 682
MnlI CCTC 3 cut(s) 158, 221, 292
Mox20I TGGCCA 1 cut(s) 651
MroXI GAANNNNTTC 1 cut(s) 357
MscI TGGCCA 1 cut(s) 651
MseI TTAA 5 cut(s) 9, 81, 408, 672, 846
MslI CAYNNNNRTG 1 cut(s) 246
Msp20I TGGCCA 1 cut(s) 651
MspI CCGG 2 cut(s) 144, 225
MspR9I CCNGG 2 cut(s) 728, 1077
MunI CAATTG 1 cut(s) 862
Mva1269I GAATGC 1 cut(s) 241
MvaI CCWGG 2 cut(s) 728, 1077
MvnI CGCG 1 cut(s) 1251
MwoI GCNNNNNNNGC 6 cut(s) 49, 186, 968, 977, 1058, 1213
NarI GGCGCC 1 cut(s) 596
NcoI CCATGG 1 cut(s) 914
NdeII GATC 7 cut(s) 59, 304, 400, 478, 543, 777, 908
NlaIII CATG 5 cut(s) 97, 718, 918, 980, 1237
NlaIV GGNNCC 2 cut(s) 480, 597
NmuCI GTSAC 3 cut(s) 15, 551, 952
NruI TCGCGA 1 cut(s) 1251
NspI RCATGY 1 cut(s) 980
NspV TTCGAA 1 cut(s) 1164
PaeI GCATGC 1 cut(s) 980
PaeR7I CTCGAG 1 cut(s) 872
PctI GAATGC 1 cut(s) 241
PdmI GAANNNNTTC 1 cut(s) 357
PfeI GAWTC 1 cut(s) 1166
PkrI GCNGC 2 cut(s) 455, 1015
PleI GAGTC 3 cut(s) 600, 826, 979
PluTI GGCGCC 1 cut(s) 599
PpsI GAGTC 3 cut(s) 600, 826, 979
Psp6I CCWGG 2 cut(s) 726, 1075
PspEI GGTNACC 1 cut(s) 15
PspGI CCWGG 2 cut(s) 726, 1075
PspN4I GGNNCC 2 cut(s) 480, 597
PspPI GGNCC 4 cut(s) 193, 396, 1073, 1240
PspXI VCTCGAGB 1 cut(s) 872
PsuI RGATCY 2 cut(s) 478, 777
RruI TCGCGA 1 cut(s) 1251
RsaI GTAC 4 cut(s) 444, 462, 896, 931
RsaNI GTAC 4 cut(s) 443, 461, 895, 930
RseI CAYNNNNRTG 1 cut(s) 246
SaqAI TTAA 5 cut(s) 9, 81, 408, 672, 846
SatI GCNGC 2 cut(s) 454, 1014
Sau3AI GATC 7 cut(s) 59, 304, 400, 478, 543, 777, 908
Sau96I GGNCC 4 cut(s) 193, 396, 1073, 1240
SchI GAGTC 3 cut(s) 600, 827, 979
ScrFI CCNGG 2 cut(s) 728, 1077
SduI GDGCHC 2 cut(s) 262, 1233
SexAI ACCWGGT 1 cut(s) 726
SfaNI GCATC 1 cut(s) 958
SfoI GGCGCC 1 cut(s) 597
Sfr274I CTCGAG 1 cut(s) 872
SfuI TTCGAA 1 cut(s) 1164
SinI GGWCC 4 cut(s) 193, 396, 1073, 1240
SlaI CTCGAG 1 cut(s) 872
SmiMI CAYNNNNRTG 1 cut(s) 246
SmlI CTYRAG 1 cut(s) 872
SmoI CTYRAG 1 cut(s) 872
SphI GCATGC 1 cut(s) 980
Sse9I AATT 7 cut(s) 323, 357, 615, 636, 656, 794, 862
SsiI CCGC 2 cut(s) 1014, 1135
SspDI GGCGCC 1 cut(s) 595
SspI AATATT 1 cut(s) 412
SspMI CTAG 6 cut(s) 5, 57, 197, 747, 837, 1041
StyD4I CCNGG 2 cut(s) 726, 1075
StyI CCWWGG 2 cut(s) 534, 914
TaaI ACNGT 5 cut(s) 442, 700, 952, 958, 1280
TaiI ACGT 2 cut(s) 448, 462
TaqI TCGA 6 cut(s) 435, 467, 873, 907, 1164, 1169
TaqII GACCGA 1 cut(s) 413
TasI AATT 7 cut(s) 323, 357, 615, 636, 656, 794, 862
TatI WGTACW 2 cut(s) 894, 929
TauI GCSGC 1 cut(s) 1016
TfiI GAWTC 1 cut(s) 1166
Tru1I TTAA 5 cut(s) 9, 81, 408, 672, 846
Tru9I TTAA 5 cut(s) 9, 81, 408, 672, 846
TscAI CASTG 4 cut(s) 160, 670, 828, 957
TseFI GTSAC 3 cut(s) 15, 551, 952
TseI GCWGC 1 cut(s) 453
Tsp45I GTSAC 3 cut(s) 15, 551, 952
TspDTI ATGAA 6 cut(s) 722, 730, 818, 982, 1134, 1188
TspGWI ACGGA 2 cut(s) 570, 978
TspRI CASTG 4 cut(s) 160, 670, 828, 957
VpaK11BI GGWCC 4 cut(s) 193, 396, 1073, 1240
XapI RAATTY 2 cut(s) 357, 656
XceI RCATGY 1 cut(s) 980
XhoI CTCGAG 1 cut(s) 872
XmnI GAANNNNTTC 1 cut(s) 357
XspI CTAG 6 cut(s) 5, 57, 197, 747, 837, 1041
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.