Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002221

Physical Location & Seq

Genomic Coordinates Reverse (-)

10347479 .. 10349902

Gene Structure 2424 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G18880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGGATGAGAATAATCATGGAGTTTCATCAAGCTCACTTCCACCTTTCCTCACCAAAACATATGAGATGGTTGATGATTCTTCATCCGATTCTATCGTCTCTTGGAGTCAGAGCAATAAGAGTTTCATCGTTTGGAATCCGCCGGAGTTTTCTAGAGATCTTCTTCCGAGATTCTTCAAGCACAATAACTTCTCTAGCTTTATCCGCCAGCTTAACACATATGGTTTTAGAAAAGCTGATCCTGAGCAATGGGAATTTGCGAATGATGATTTTGTGAGAGGTCAACCTCATCTTATGAAGAACATTCATAGACGCAAACCAGTTCATAGCCACTCTTTACCGAATCTTCAAGCTCAGTTAAACCCGTTGACGGATTCAGAACGAGTGAGAATGAATAATCAGATTGAGAGATTGACAAAAGAGAAAGAAGGATTGCTTGAAGAGTTACATAAACAAGACGAGGAACGAGAAGTGTTTGAGATGCAAGTGAAAGAACTTAAAGAACGATTACAACACATGGAGAAGCGTCAGAAAACAATGGTTTCGTTTGTTTCTCAAGTATTGGAAAAGCCAGGGCTTGCTTTGAACCTATCGCCGTGTGTTCCCGAAACAAACGAGAGGAAAAGAAGGTTCCCTAGGATCGAGTTCTTTCCCGATGAACCGATGTTGGAAGAGAACAAAACTTGTGTTGTTGTGAGAGAGGAAGGTTCTACAAGCCCTTCTTCACACACAAGAGAGCATCAAGTGGAACAGTTAGAGTCATCGATAGCGATTTGGGAGAATCTTGTATCGGATTCTTGTGAGAGTATGTTACAATCAAGAAGTATGATGACACTTGATGTGGATGAATCATCTACTTTTCCAGAGAGCCCTCCTCTTTCTTGCATACAGTTAAGTGTCGATTCACGTCTCAAATCTCCTCCTTCTCCAAGGATCATCGATATGAACTGTGAGCCCGATGGTTCGAAAGAACAGAACACTGTTGCTGCTCCTCCTCCTCCTCCAGTAGCAGGAGCGAATGATGGCTTCTGGCAGCAGTTTTTCTCAGAGAATCCTGGCTCAACCGAGCAACGGGAAGTTCAATTAGAGAGGAAAGACGATAAAGATAAAGCCGGAGTACGTACTGAGAAATGTTGGTGGAATTCGAGAAATGTTAATGCAATTACAGAACAGCTTGGACATCTGACTTCTTCAGAGAGAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0003006 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0009266 GO:0009408 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009958 GO:0010033 GO:0010154 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046983 GO:0048364 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048530 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090696 GO:0090698 GO:0099402 GO:0140110 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

401

Amino Acids

46.24

Weight (kDa)

5.33

Isoelectric Point (pI)

62.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSF_DNA-bind	PF00447	16 - 105	5.1e-30	HSF-type DNA-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18880 AT5G45710 AT5G45710 AT5G45710 AT5G45710
fragaria_vesca	FvH4_3g07170 FvH4_3g07170 FvH4_6g27900
malus_domestica	MD00G1007800.v1.1 MD09G1233700.v1.1 MD10G1274400.v1.1 MD17G1230100.v1.1
prunus_persica	Prupe.3G108700_v2.0.a1 Prupe.3G108700_v2.0.a1 Prupe.4G068100_v2.0.a1 Prupe.4G068100_v2.0.a1 Prupe.4G068100_v2.0.a1 Prupe.4G068100_v2.0.a1 Prupe.4G068100_v2.0.a1
pyrus_communis	pycom05g27300 pycom09g15200 pycom10g22900 pycom17g23300
rosa_chinensis	RchiOBHm_Chr2g0131371 RchiOBHm_Chr5g0011961
rosa_laevigata	RLG00000019181 RLG00000031873
rosa_multiflora	Rmu_sc0001475.1_g000001 Rmu_ssc0000009.1_g000034
rosa_roxburghii	Rroxscaffold_1G00064630 Rroxscaffold_2G00113040
rosa_rugosa	Rorug02G0296200 Rorug04G0460200
rosa_samantha	Rh2AG349500 Rh2BG356400 Rh2CG335300 Rh2DG374300 Rh5AG091800 Rh5BG087700 Rh5CG101500 Rh5DG088300
rosa_wichuraiana	Rw2G028360 Rw5G008020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	140, 205
AclWI	GGATC	3 cut(s)	233, 647, 941
AcsI	RAATTY	2 cut(s)	254, 1141
AcuI	CTGAAG	1 cut(s)	1176
AfaI	GTAC	2 cut(s)	1119, 1123
AfiI	CCNNNNNNNGG	3 cut(s)	370, 1010, 1071
AgsI	TTSAA	5 cut(s)	178, 350, 440, 586, 1082
AjiI	CACGTC	1 cut(s)	908
AjnI	CCWGG	2 cut(s)	571, 1054
AluBI	AGCT	6 cut(s)	33, 198, 211, 236, 353, 1174
AluI	AGCT	6 cut(s)	33, 198, 211, 236, 353, 1174
Alw26I	GTCTC	2 cut(s)	103, 914
AlwI	GGATC	3 cut(s)	233, 647, 941
ApeKI	GCWGC	2 cut(s)	986, 1033
ApoI	RAATTY	2 cut(s)	254, 1141
AspA2I	CCTAGG	1 cut(s)	635
AsuHPI	GGTGA	1 cut(s)	43
AsuII	TTCGAA	1 cut(s)	965
AvrII	CCTAGG	1 cut(s)	635
BanII	GRGCYC	2 cut(s)	872, 957
BbvI	GCAGC	2 cut(s)	973, 1045
BccI	CCATC	3 cut(s)	61, 953, 1016
BceAI	ACGGC	1 cut(s)	580
BciT130I	CCWGG	2 cut(s)	573, 1056
BcoDI	GTCTC	2 cut(s)	103, 914
BfaI	CTAG	3 cut(s)	153, 195, 636
BglII	AGATCT	1 cut(s)	157
BisI	GCNGC	2 cut(s)	987, 1034
BlnI	CCTAGG	1 cut(s)	635
BlsI	GCNGC	2 cut(s)	988, 1035
Bme1390I	CCNGG	2 cut(s)	573, 1056
BmgBI	CACGTC	1 cut(s)	908
BmiI	GGNNCC	1 cut(s)	632
BmrFI	CCNGG	2 cut(s)	573, 1056
BmsI	GCATC	2 cut(s)	471, 748
BplI	GAGNNNNNCTC	2 cut(s)	859, 891
BpmI	CTGGAG	1 cut(s)	987
Bpu10I	CCTNAGC	1 cut(s)	243
Bpu14I	TTCGAA	1 cut(s)	965
BpuEI	CTTGAG	1 cut(s)	540
Bsa29I	ATCGAT	2 cut(s)	764, 939
BsaAI	YACGTR	1 cut(s)	1121
BsaJI	CCNNGG	3 cut(s)	572, 635, 929
Bsc4I	CCNNNNNNNGG	3 cut(s)	370, 1010, 1071
Bse1I	ACTGG	2 cut(s)	320, 1004
Bse3DI	GCAATG	1 cut(s)	254
BseBI	CCWGG	2 cut(s)	573, 1056
BseCI	ATCGAT	2 cut(s)	764, 939
BseDI	CCNNGG	3 cut(s)	572, 635, 929
BseGI	GGATG	3 cut(s)	10, 83, 850
BseLI	CCNNNNNNNGG	3 cut(s)	370, 1010, 1071
BseMI	GCAATG	1 cut(s)	254
BseMII	CTCAG	4 cut(s)	234, 368, 1059, 1116
BseNI	ACTGG	2 cut(s)	320, 1004
BseRI	GAGGAG	6 cut(s)	864, 909, 981, 984, 987, 990
BseXI	GCAGC	2 cut(s)	973, 1045
BshVI	ATCGAT	2 cut(s)	764, 939
BsiSI	CCGG	2 cut(s)	143, 1113
BslI	CCNNNNNNNGG	3 cut(s)	370, 1010, 1071
BsmAI	GTCTC	2 cut(s)	103, 914
BsmBI	CGTCTC	2 cut(s)	103, 914
Bsp119I	TTCGAA	1 cut(s)	965
Bsp1286I	GDGCHC	2 cut(s)	872, 957
Bsp143I	GATC	4 cut(s)	157, 238, 639, 933
BspACI	CCGC	2 cut(s)	140, 205
BspCNI	CTCAG	4 cut(s)	235, 367, 1058, 1117
BspDI	ATCGAT	2 cut(s)	764, 939
BspLI	GGNNCC	1 cut(s)	632
BspPI	GGATC	3 cut(s)	233, 647, 941
BspT104I	TTCGAA	1 cut(s)	965
BsrDI	GCAATG	1 cut(s)	254
BsrI	ACTGG	2 cut(s)	320, 1004
BssECI	CCNNGG	3 cut(s)	572, 635, 929
BssMI	GATC	4 cut(s)	157, 238, 639, 933
BssT1I	CCWWGG	2 cut(s)	635, 929
Bst2UI	CCWGG	2 cut(s)	573, 1056
Bst4CI	ACNGT	4 cut(s)	753, 891, 950, 982
Bst6I	CTCTTC	2 cut(s)	435, 666
BstBAI	YACGTR	1 cut(s)	1121
BstBI	TTCGAA	1 cut(s)	965
BstC8I	GCNNGC	2 cut(s)	209, 579
BstDEI	CTNAG	4 cut(s)	243, 354, 1045, 1125
BstF5I	GGATG	3 cut(s)	10, 83, 850
BstKTI	GATC	4 cut(s)	160, 241, 642, 936
BstMAI	GTCTC	2 cut(s)	103, 914
BstMBI	GATC	4 cut(s)	157, 238, 639, 933
BstMWI	GCNNNNNNNGC	1 cut(s)	204
BstNI	CCWGG	2 cut(s)	573, 1056
BstSCI	CCNGG	2 cut(s)	571, 1054
BstSNI	TACGTA	1 cut(s)	1121
BstV1I	GCAGC	2 cut(s)	973, 1045
BstX2I	RGATCY	1 cut(s)	157
BstYI	RGATCY	1 cut(s)	157
Bsu15I	ATCGAT	2 cut(s)	764, 939
BsuTUI	ATCGAT	2 cut(s)	764, 939
BtrI	CACGTC	1 cut(s)	908
BtsCI	GGATG	3 cut(s)	10, 83, 850
BtsIMutI	CAGTG	1 cut(s)	978
Cac8I	GCNNGC	2 cut(s)	209, 579
ClaI	ATCGAT	2 cut(s)	764, 939
CseI	GACGC	2 cut(s)	321, 515
Csp6I	GTAC	2 cut(s)	1118, 1122
CviAII	CATG	2 cut(s)	17, 517
CviQI	GTAC	2 cut(s)	1118, 1122
DdeI	CTNAG	4 cut(s)	243, 354, 1045, 1125
DpnI	GATC	4 cut(s)	159, 240, 641, 935
DpnII	GATC	4 cut(s)	157, 238, 639, 933
Eam1104I	CTCTTC	2 cut(s)	435, 666
EarI	CTCTTC	2 cut(s)	435, 666
EciI	GGCGGA	2 cut(s)	129, 194
Eco105I	TACGTA	1 cut(s)	1121
Eco130I	CCWWGG	2 cut(s)	635, 929
Eco24I	GRGCYC	2 cut(s)	872, 957
Eco57I	CTGAAG	1 cut(s)	1176
EcoRI	GAATTC	1 cut(s)	1141
EcoRII	CCWGG	2 cut(s)	571, 1054
EcoT14I	CCWWGG	2 cut(s)	635, 929
EcoT38I	GRGCYC	2 cut(s)	872, 957
ErhI	CCWWGG	2 cut(s)	635, 929
Esp3I	CGTCTC	2 cut(s)	103, 914
FaeI	CATG	2 cut(s)	20, 520
FalI	AAGNNNNNCTT	4 cut(s)	420, 452, 706, 738
FatI	CATG	2 cut(s)	16, 516
FauNDI	CATATG	2 cut(s)	61, 220
Fnu4HI	GCNGC	2 cut(s)	987, 1034
FokI	GGATG	3 cut(s)	17, 70, 857
FriOI	GRGCYC	2 cut(s)	872, 957
Fsp4HI	GCNGC	2 cut(s)	987, 1034
FspBI	CTAG	3 cut(s)	153, 195, 636
GluI	GCNGC	2 cut(s)	987, 1034
GsuI	CTGGAG	1 cut(s)	987
HapII	CCGG	2 cut(s)	143, 1113
HgaI	GACGC	2 cut(s)	321, 515
Hin1II	CATG	2 cut(s)	20, 520
HincII	GTYRAC	2 cut(s)	284, 369
HindII	GTYRAC	2 cut(s)	284, 369
HpaII	CCGG	2 cut(s)	143, 1113
HphI	GGTGA	1 cut(s)	43
Hpy166II	GTNNAC	2 cut(s)	284, 369
Hpy188III	TCNNGA	7 cut(s)	153, 242, 605, 653, 819, 863, 1146
Hpy8I	GTNNAC	2 cut(s)	284, 369
HpyAV	CCTTC	5 cut(s)	422, 621, 698, 729, 933
HpyCH4III	ACNGT	4 cut(s)	753, 891, 950, 982
HpyCH4IV	ACGT	2 cut(s)	907, 1120
HpyCH4V	TGCA	3 cut(s)	484, 885, 1160
HpyF10VI	GCNNNNNNNGC	1 cut(s)	204
HpyF3I	CTNAG	4 cut(s)	243, 354, 1045, 1125
HpySE526I	ACGT	2 cut(s)	907, 1120
Hsp92II	CATG	2 cut(s)	20, 520
Kzo9I	GATC	4 cut(s)	157, 238, 639, 933
LmnI	GCTCC	2 cut(s)	994, 1013
Lsp1109I	GCAGC	2 cut(s)	973, 1045
LweI	GCATC	2 cut(s)	471, 748
MaeI	CTAG	3 cut(s)	153, 195, 636
MaeII	ACGT	2 cut(s)	907, 1120
MaeIII	GTNAC	2 cut(s)	444, 810
MalI	GATC	4 cut(s)	159, 240, 641, 935
MboI	GATC	4 cut(s)	157, 238, 639, 933
MflI	RGATCY	1 cut(s)	157
MhlI	GDGCHC	2 cut(s)	872, 957
MluCI	AATT	4 cut(s)	254, 1082, 1141, 1161
MlyI	GAGTC	2 cut(s)	115, 767
MmeI	TCCRAC	1 cut(s)	648
MseI	TTAA	5 cut(s)	213, 359, 498, 893, 1155
MslI	CAYNNNNRTG	1 cut(s)	941
MspI	CCGG	2 cut(s)	143, 1113
MspR9I	CCNGG	2 cut(s)	573, 1056
MvaI	CCWGG	2 cut(s)	573, 1056
MwoI	GCNNNNNNNGC	1 cut(s)	204
NdeI	CATATG	2 cut(s)	61, 220
NdeII	GATC	4 cut(s)	157, 238, 639, 933
NlaIII	CATG	2 cut(s)	20, 520
NlaIV	GGNNCC	1 cut(s)	632
NspV	TTCGAA	1 cut(s)	965
PkrI	GCNGC	2 cut(s)	988, 1035
PleI	GAGTC	2 cut(s)	114, 766
PpsI	GAGTC	2 cut(s)	114, 766
Ppu21I	YACGTR	1 cut(s)	1121
Psp6I	CCWGG	2 cut(s)	571, 1054
PspGI	CCWGG	2 cut(s)	571, 1054
PspN4I	GGNNCC	1 cut(s)	632
PsuI	RGATCY	1 cut(s)	157
RsaI	GTAC	2 cut(s)	1119, 1123
RsaNI	GTAC	2 cut(s)	1118, 1122
RseI	CAYNNNNRTG	1 cut(s)	941
SaqAI	TTAA	5 cut(s)	213, 359, 498, 893, 1155
SatI	GCNGC	2 cut(s)	987, 1034
Sau3AI	GATC	4 cut(s)	157, 238, 639, 933
SchI	GAGTC	2 cut(s)	115, 767
ScrFI	CCNGG	2 cut(s)	573, 1056
SduI	GDGCHC	2 cut(s)	872, 957
SfaNI	GCATC	2 cut(s)	471, 748
SfuI	TTCGAA	1 cut(s)	965
SmiMI	CAYNNNNRTG	1 cut(s)	941
SmlI	CTYRAG	1 cut(s)	555
SmoI	CTYRAG	1 cut(s)	555
SnaBI	TACGTA	1 cut(s)	1121
Sse9I	AATT	4 cut(s)	254, 1082, 1141, 1161
SsiI	CCGC	2 cut(s)	140, 205
SspMI	CTAG	3 cut(s)	153, 195, 636
StyD4I	CCNGG	2 cut(s)	571, 1054
StyI	CCWWGG	2 cut(s)	635, 929
TaaI	ACNGT	4 cut(s)	753, 891, 950, 982
TaiI	ACGT	2 cut(s)	910, 1123
TaqI	TCGA	6 cut(s)	642, 764, 900, 939, 965, 1145
TasI	AATT	4 cut(s)	254, 1082, 1141, 1161
Tru1I	TTAA	5 cut(s)	213, 359, 498, 893, 1155
Tru9I	TTAA	5 cut(s)	213, 359, 498, 893, 1155
TscAI	CASTG	1 cut(s)	985
TseI	GCWGC	2 cut(s)	986, 1033
TspGWI	ACGGA	1 cut(s)	386
TspRI	CASTG	1 cut(s)	985
XapI	RAATTY	2 cut(s)	254, 1141
XbaI	TCTAGA	1 cut(s)	152
XmaJI	CCTAGG	1 cut(s)	635
XspI	CTAG	3 cut(s)	153, 195, 636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.