Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0002221

Physical Location & Seq

Genomic Coordinates Forward (+)

15053000 .. 15055811

Gene Structure 2812 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g15200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGGATGGTTCTCAGGGTGGTTCTGGTGGTGCGCCGGCGCCGTTTCTTACTAAAACATATGACTTGGTGGATGATCCTTCGTCCAACCACATGGTGTCTTGGAGTGAAACTGGTTCTAGTTTTGTAGTTTGGGATCCCACCGAGTTCGCCAAGGAAATGCTTCCCATGTATTTCAAGCACAACAATTTTTCGAGTTTCGTGAGGCAGCTTAATACATATGGGTTTAGAAAGATTGATCGAGAACAGTGGGAGTTTGCAAATGAGGAATTCTTAAGAGGAGGAAGACATCTGCTGAAGAATATTCACCGCCGCAAGCCAATTCATAGTCATTCCTTGCAGAATCACGAGTATTCTTCAGTTCCTTTGACTGATACGGAGAGAGAAGAATATGAGAAGAAAATCAACAGACTGAATCATGATAAAAGCTTGCTTGAGTTGGAGGTACAACGGCATCAAAGAGAGAACCAGGAGTTTGAATTTCAAATACAGATATTACGAGAACAGCTGCAGAACATGGAGAATCGGCAGAGGCAATATACGGCTTTCCTTGCTCAACTAGTGCAGAAACCGGGATTTGCTTCTGTACTTGTGCAGCAGTCAGAAATCCATAGCAAAAAGAGAAGATTACTGAAATCGAACGACTTTCCTGATGACTTTGGTATGGAAGATTTGACTTTGAATCCGCAGAAAGAAACTTTGGGAATAAAGTTGGACCAGCTTGAGAAGATGGAGTCTTCCTTGAACTTTTGGGAAGATTTTCTACATGGGGTTGGGGAAGCGATGCCCGAAGAATTAAATGATATTGGCCCGTTGTCTCAGGCCTCTCCTATCATTGTTACAGAAATACAAGACACCAGCATGAATAGCAGGCCTTGCTCACCTAGATCGCATATATCTTCACCGAATTCAATGAATGCTCATTCCTTCCCAGAGGTGGCTGGCTCTGCAAATCCTTTTGACATCCTTACTATAACATCAATGTGCCACACTGTTGATTTCAGGTCTAAATCTTCAGGAATTGATATGAACTCCAAGCCCGACAGTGCCCCTGCTCTTGATTCCTCGAAAGAAAATGTAGTAGAAGTGAAAAATGCCGAGCCTGCCAAGGCAAATGATGTCTTTTGGGAACAATGCCTAACAGAGACTCCTGGTTTAGATGATGCGCCGGAAGTACAGTCAGAAAGAATGGATGGCGATGGCGATGGCAAAGCGAGTGATGCCAATCCAGCTATTCGGAAGAAGCTTTGGTGGAACACAGATAATGTAGATAACTTTAGGAACCAAATAGGGCGCCTCACTCCAGCTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04212 ko05134 map04212 map05134

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

437

Amino Acids

49.66

Weight (kDa)

5.18

Isoelectric Point (pI)

49.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18880 AT5G45710 AT5G45710 AT5G45710 AT5G45710
fragaria_vesca	FvH4_3g07170 FvH4_3g07170 FvH4_6g27900
malus_domestica	MD00G1007800.v1.1 MD09G1233700.v1.1 MD10G1274400.v1.1 MD17G1230100.v1.1
prunus_persica	Prupe.3G108700_v2.0.a1 Prupe.3G108700_v2.0.a1 Prupe.4G068100_v2.0.a1 Prupe.4G068100_v2.0.a1 Prupe.4G068100_v2.0.a1 Prupe.4G068100_v2.0.a1 Prupe.4G068100_v2.0.a1
pyrus_communis	pycom05g27300 pycom09g15200 pycom10g22900 pycom17g23300
rosa_chinensis	RchiOBHm_Chr2g0131371 RchiOBHm_Chr5g0011961
rosa_laevigata	RLG00000019181 RLG00000031873
rosa_multiflora	Rmu_sc0001475.1_g000001 Rmu_ssc0000009.1_g000034
rosa_roxburghii	Rroxscaffold_1G00064630 Rroxscaffold_2G00113040
rosa_rugosa	Rorug02G0296200 Rorug04G0460200
rosa_samantha	Rh2AG349500 Rh2BG356400 Rh2CG335300 Rh2DG374300 Rh5AG091800 Rh5BG087700 Rh5CG101500 Rh5DG088300
rosa_wichuraiana	Rw2G028360 Rw5G008020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	37, 1290
AciI	CCGC	3 cut(s)	307, 310, 683
AclWI	GGATC	3 cut(s)	68, 128, 141
AcsI	RAATTY	3 cut(s)	266, 476, 904
AcuI	CTGAAG	3 cut(s)	314, 339, 996
AcyI	GRCGYC	2 cut(s)	38, 1291
AdeI	CACNNNGTG	1 cut(s)	94
AfaI	GTAC	3 cut(s)	444, 585, 1173
AfiI	CCNNNNNNNGG	1 cut(s)	934
AflII	CTTAAG	1 cut(s)	271
AgsI	TTSAA	6 cut(s)	175, 476, 482, 679, 742, 909
AhlI	ACTAGT	1 cut(s)	556
AjnI	CCWGG	2 cut(s)	465, 1147
AjuI	GAANNNNNNNTTGG	2 cut(s)	680, 712
AluBI	AGCT	7 cut(s)	208, 426, 505, 718, 1229, 1243, 1304
AluI	AGCT	7 cut(s)	208, 426, 505, 718, 1229, 1243, 1304
Alw26I	GTCTC	2 cut(s)	819, 1136
AlwI	GGATC	3 cut(s)	68, 128, 141
AoxI	GGCC	3 cut(s)	805, 819, 869
ApeKI	GCWGC	3 cut(s)	205, 505, 592
ApoI	RAATTY	3 cut(s)	266, 476, 904
Asp700I	GAANNNNTTC	2 cut(s)	159, 756
AspLEI	GCGC	4 cut(s)	34, 40, 1165, 1293
AspS9I	GGNCC	2 cut(s)	712, 806
AsuC2I	CCSGG	1 cut(s)	570
AsuHPI	GGTGA	3 cut(s)	296, 870, 891
AvaII	GGWCC	1 cut(s)	712
BaeGI	GKGCMC	1 cut(s)	1048
BamHI	GGATCC	1 cut(s)	133
BanI	GGYRCC	2 cut(s)	37, 1290
BarI	GAAGNNNNNNTAC	2 cut(s)	744, 776
BauI	CACGAG	1 cut(s)	344
BbsI	GAAGAC	2 cut(s)	289, 726
BbvI	GCAGC	3 cut(s)	217, 492, 604
BccI	CCATC	4 cut(s)	721, 1184, 1190, 1196
BceAI	ACGGC	3 cut(s)	25, 464, 555
BciT130I	CCWGG	2 cut(s)	467, 1149
BcnI	CCSGG	1 cut(s)	570
BcoDI	GTCTC	2 cut(s)	819, 1136
BcuI	ACTAGT	1 cut(s)	556
BfaI	CTAG	3 cut(s)	117, 557, 882
BfmI	CTRYAG	1 cut(s)	506
BfoI	RGCGCY	2 cut(s)	41, 1294
BfrI	CTTAAG	1 cut(s)	271
BisI	GCNGC	4 cut(s)	206, 310, 506, 593
BlsI	GCNGC	4 cut(s)	207, 311, 507, 594
Bme1390I	CCNGG	3 cut(s)	467, 570, 1149
Bme18I	GGWCC	1 cut(s)	712
BmgT120I	GGNCC	2 cut(s)	712, 806
BmiI	GGNNCC	4 cut(s)	39, 135, 1280, 1292
BmrFI	CCNGG	3 cut(s)	467, 570, 1149
BmsI	GCATC	4 cut(s)	460, 771, 1150, 1207
BpiI	GAAGAC	2 cut(s)	289, 726
BpmI	CTGGAG	1 cut(s)	1284
BpuEI	CTTGAG	2 cut(s)	452, 740
BpuMI	CCSGG	1 cut(s)	570
BsaBI	GATNNNNATC	1 cut(s)	1221
BsaHI	GRCGYC	2 cut(s)	38, 1291
BsaJI	CCNNGG	2 cut(s)	150, 1104
BsaXI	ACNNNNNCTCC	2 cut(s)	1129, 1159
Bsc4I	CCNNNNNNNGG	1 cut(s)	934
Bse118I	RCCGGY	1 cut(s)	34
Bse1I	ACTGG	1 cut(s)	115
Bse8I	GATNNNNATC	1 cut(s)	1221
BseBI	CCWGG	2 cut(s)	467, 1149
BseDI	CCNNGG	2 cut(s)	150, 1104
BseGI	GGATG	4 cut(s)	10, 76, 960, 1195
BseJI	GATNNNNATC	1 cut(s)	1221
BseLI	CCNNNNNNNGG	1 cut(s)	934
BseMII	CTCAG	2 cut(s)	26, 830
BseNI	ACTGG	1 cut(s)	115
BseRI	GAGGAG	1 cut(s)	291
BseSI	GKGCMC	1 cut(s)	1048
BseXI	GCAGC	3 cut(s)	217, 492, 604
BsgI	GTGCAG	2 cut(s)	581, 611
BshFI	GGCC	3 cut(s)	807, 821, 871
BshNI	GGYRCC	2 cut(s)	37, 1290
BsiSI	CCGG	3 cut(s)	35, 569, 1166
BslI	CCNNNNNNNGG	1 cut(s)	934
BsmAI	GTCTC	2 cut(s)	819, 1136
BsmI	GAATGC	1 cut(s)	919
BsnI	GGCC	3 cut(s)	807, 821, 871
Bsp1286I	GDGCHC	1 cut(s)	1048
Bsp143I	GATC	4 cut(s)	73, 133, 235, 884
BspACI	CCGC	3 cut(s)	307, 310, 683
BspANI	GGCC	3 cut(s)	807, 821, 871
BspCNI	CTCAG	2 cut(s)	25, 829
BspHI	TCATGA	1 cut(s)	415
BspLI	GGNNCC	4 cut(s)	39, 135, 1280, 1292
BspMAI	CTGCAG	1 cut(s)	510
BspPI	GGATC	3 cut(s)	68, 128, 141
BspT107I	GGYRCC	2 cut(s)	37, 1290
BspTI	CTTAAG	1 cut(s)	271
BsrFI	RCCGGY	1 cut(s)	34
BsrI	ACTGG	1 cut(s)	115
BssAI	RCCGGY	1 cut(s)	34
BssECI	CCNNGG	2 cut(s)	150, 1104
BssMI	GATC	4 cut(s)	73, 133, 235, 884
BssNI	GRCGYC	2 cut(s)	38, 1291
BssSI	CACGAG	1 cut(s)	344
BssT1I	CCWWGG	2 cut(s)	150, 1104
Bst2BI	CACGAG	1 cut(s)	344
Bst2UI	CCWGG	2 cut(s)	467, 1149
Bst4CI	ACNGT	4 cut(s)	246, 991, 1043, 1176
BstACI	GRCGYC	2 cut(s)	38, 1291
BstAFI	CTTAAG	1 cut(s)	271
BstAPI	GCANNNNNTGC	1 cut(s)	873
BstC8I	GCNNGC	6 cut(s)	36, 314, 428, 869, 940, 1101
BstDEI	CTNAG	2 cut(s)	12, 816
BstF5I	GGATG	4 cut(s)	10, 76, 960, 1195
BstH2I	RGCGCY	2 cut(s)	41, 1294
BstHHI	GCGC	4 cut(s)	34, 40, 1165, 1293
BstKTI	GATC	4 cut(s)	76, 136, 238, 887
BstMAI	GTCTC	2 cut(s)	819, 1136
BstMBI	GATC	4 cut(s)	73, 133, 235, 884
BstMWI	GCNNNNNNNGC	7 cut(s)	548, 864, 873, 944, 1100, 1217, 1226
BstNI	CCWGG	2 cut(s)	467, 1149
BstSCI	CCNGG	3 cut(s)	465, 568, 1147
BstSFI	CTRYAG	1 cut(s)	506
BstSLI	GKGCMC	1 cut(s)	1048
BstV1I	GCAGC	3 cut(s)	217, 492, 604
BstV2I	GAAGAC	2 cut(s)	289, 726
BstX2I	RGATCY	1 cut(s)	133
BstXI	CCANNNNNNTGG	1 cut(s)	91
BstYI	RGATCY	1 cut(s)	133
BsuRI	GGCC	3 cut(s)	807, 821, 871
BtgZI	GCGATG	3 cut(s)	794, 1209, 1215
BtsCI	GGATG	4 cut(s)	10, 76, 960, 1195
BtsIMutI	CAGTG	3 cut(s)	251, 987, 1048
Cac8I	GCNNGC	6 cut(s)	36, 314, 428, 869, 940, 1101
CciI	TCATGA	1 cut(s)	415
CfoI	GCGC	4 cut(s)	34, 40, 1165, 1293
Cfr10I	RCCGGY	1 cut(s)	34
Cfr13I	GGNCC	2 cut(s)	712, 806
Csp6I	GTAC	3 cut(s)	443, 584, 1172
CviAII	CATG	6 cut(s)	91, 166, 416, 514, 764, 859
CviQI	GTAC	3 cut(s)	443, 584, 1172
DdeI	CTNAG	2 cut(s)	12, 816
DinI	GGCGCC	2 cut(s)	39, 1292
DpnI	GATC	4 cut(s)	75, 135, 237, 886
DpnII	GATC	4 cut(s)	73, 133, 235, 884
DraIII	CACNNNGTG	1 cut(s)	94
Eco130I	CCWWGG	2 cut(s)	150, 1104
Eco147I	AGGCCT	2 cut(s)	821, 871
Eco47I	GGWCC	1 cut(s)	712
Eco57I	CTGAAG	3 cut(s)	314, 339, 996
EcoRI	GAATTC	2 cut(s)	266, 904
EcoRII	CCWGG	2 cut(s)	465, 1147
EcoT14I	CCWWGG	2 cut(s)	150, 1104
EgeI	GGCGCC	2 cut(s)	39, 1292
EheI	GGCGCC	2 cut(s)	39, 1292
ErhI	CCWWGG	2 cut(s)	150, 1104
FaeI	CATG	6 cut(s)	94, 169, 419, 517, 767, 862
FatI	CATG	6 cut(s)	90, 165, 415, 513, 763, 858
FauNDI	CATATG	2 cut(s)	58, 217
Fnu4HI	GCNGC	4 cut(s)	206, 310, 506, 593
FokI	GGATG	4 cut(s)	17, 83, 947, 1202
Fsp4HI	GCNGC	4 cut(s)	206, 310, 506, 593
FspBI	CTAG	3 cut(s)	117, 557, 882
GlaI	GCGC	4 cut(s)	33, 39, 1164, 1292
GluI	GCNGC	4 cut(s)	206, 310, 506, 593
GsuI	CTGGAG	1 cut(s)	1284
HaeII	RGCGCY	2 cut(s)	41, 1294
HaeIII	GGCC	3 cut(s)	807, 821, 871
HapII	CCGG	3 cut(s)	35, 569, 1166
HhaI	GCGC	4 cut(s)	34, 40, 1165, 1293
Hin1I	GRCGYC	2 cut(s)	38, 1291
Hin1II	CATG	6 cut(s)	94, 169, 419, 517, 767, 862
Hin6I	GCGC	4 cut(s)	32, 38, 1163, 1291
HinP1I	GCGC	4 cut(s)	32, 38, 1163, 1291
HindIII	AAGCTT	2 cut(s)	424, 1241
HinfI	GANTC	7 cut(s)	340, 412, 520, 679, 731, 1058, 1144
HpaII	CCGG	3 cut(s)	35, 569, 1166
HphI	GGTGA	3 cut(s)	296, 870, 891
Hpy188I	TCNGA	3 cut(s)	601, 1180, 1236
Hpy188III	TCNNGA	7 cut(s)	199, 239, 344, 416, 647, 1014, 1055
HpyAV	CCTTC	2 cut(s)	87, 934
HpyCH4III	ACNGT	4 cut(s)	246, 991, 1043, 1176
HpyCH4V	TGCA	6 cut(s)	257, 337, 508, 562, 592, 947
HpyF10VI	GCNNNNNNNGC	7 cut(s)	548, 864, 873, 944, 1100, 1217, 1226
HpyF3I	CTNAG	2 cut(s)	12, 816
Hsp92I	GRCGYC	2 cut(s)	38, 1291
Hsp92II	CATG	6 cut(s)	94, 169, 419, 517, 767, 862
HspAI	GCGC	4 cut(s)	32, 38, 1163, 1291
KasI	GGCGCC	2 cut(s)	37, 1290
KroI	GCCGGC	1 cut(s)	34
KroNI	GCCGGC	1 cut(s)	36
Kzo9I	GATC	4 cut(s)	73, 133, 235, 884
Lsp1109I	GCAGC	3 cut(s)	217, 492, 604
LweI	GCATC	4 cut(s)	460, 771, 1150, 1207
MaeI	CTAG	3 cut(s)	117, 557, 882
MaeIII	GTNAC	1 cut(s)	835
MalI	GATC	4 cut(s)	75, 135, 237, 886
MboI	GATC	4 cut(s)	73, 133, 235, 884
MflI	RGATCY	1 cut(s)	133
MhlI	GDGCHC	1 cut(s)	1048
MluCI	AATT	7 cut(s)	184, 266, 318, 476, 791, 904, 1017
Mly113I	GGCGCC	2 cut(s)	38, 1291
MlyI	GAGTC	2 cut(s)	740, 1138
MmeI	TCCRAC	3 cut(s)	108, 417, 690
MreI	CGCCGGCG	1 cut(s)	34
MroNI	GCCGGC	1 cut(s)	34
MroXI	GAANNNNTTC	2 cut(s)	159, 756
MseI	TTAA	3 cut(s)	210, 272, 794
MslI	CAYNNNNRTG	2 cut(s)	857, 979
MspA1I	CMGCKG	1 cut(s)	505
MspCI	CTTAAG	1 cut(s)	271
MspI	CCGG	3 cut(s)	35, 569, 1166
MspR9I	CCNGG	3 cut(s)	467, 570, 1149
Mva1269I	GAATGC	1 cut(s)	919
MvaI	CCWGG	2 cut(s)	467, 1149
MwoI	GCNNNNNNNGC	7 cut(s)	548, 864, 873, 944, 1100, 1217, 1226
NaeI	GCCGGC	1 cut(s)	36
NarI	GGCGCC	2 cut(s)	38, 1291
NciI	CCSGG	1 cut(s)	570
NdeI	CATATG	2 cut(s)	58, 217
NdeII	GATC	4 cut(s)	73, 133, 235, 884
NgoMIV	GCCGGC	1 cut(s)	34
NlaIII	CATG	6 cut(s)	94, 169, 419, 517, 767, 862
NlaIV	GGNNCC	4 cut(s)	39, 135, 1280, 1292
NmeAIII	GCCGAG	1 cut(s)	1120
PagI	TCATGA	1 cut(s)	415
PceI	AGGCCT	2 cut(s)	821, 871
PctI	GAATGC	1 cut(s)	919
PdiI	GCCGGC	1 cut(s)	36
PdmI	GAANNNNTTC	2 cut(s)	159, 756
PfeI	GAWTC	5 cut(s)	340, 412, 520, 679, 1058
PkrI	GCNGC	4 cut(s)	207, 311, 507, 594
PleI	GAGTC	2 cut(s)	739, 1138
PluTI	GGCGCC	2 cut(s)	41, 1294
PpsI	GAGTC	2 cut(s)	739, 1138
Psp6I	CCWGG	2 cut(s)	465, 1147
PspGI	CCWGG	2 cut(s)	465, 1147
PspN4I	GGNNCC	4 cut(s)	39, 135, 1280, 1292
PspPI	GGNCC	2 cut(s)	712, 806
PstI	CTGCAG	1 cut(s)	510
PsuI	RGATCY	1 cut(s)	133
PvuII	CAGCTG	1 cut(s)	505
RsaI	GTAC	3 cut(s)	444, 585, 1173
RsaNI	GTAC	3 cut(s)	443, 584, 1172
RseI	CAYNNNNRTG	2 cut(s)	857, 979
SaqAI	TTAA	3 cut(s)	210, 272, 794
SatI	GCNGC	4 cut(s)	206, 310, 506, 593
Sau3AI	GATC	4 cut(s)	73, 133, 235, 884
Sau96I	GGNCC	2 cut(s)	712, 806
SchI	GAGTC	2 cut(s)	740, 1138
ScrFI	CCNGG	3 cut(s)	467, 570, 1149
SduI	GDGCHC	1 cut(s)	1048
SfaNI	GCATC	4 cut(s)	460, 771, 1150, 1207
SfcI	CTRYAG	1 cut(s)	506
SfoI	GGCGCC	2 cut(s)	39, 1292
SgrAI	CRCCGGYG	1 cut(s)	34
SinI	GGWCC	1 cut(s)	712
SmiMI	CAYNNNNRTG	2 cut(s)	857, 979
SmlI	CTYRAG	3 cut(s)	271, 431, 719
SmoI	CTYRAG	3 cut(s)	271, 431, 719
SpeI	ACTAGT	1 cut(s)	556
Sse9I	AATT	7 cut(s)	184, 266, 318, 476, 791, 904, 1017
SseBI	AGGCCT	2 cut(s)	821, 871
SsiI	CCGC	3 cut(s)	307, 310, 683
SspDI	GGCGCC	2 cut(s)	37, 1290
SspI	AATATT	1 cut(s)	301
SspMI	CTAG	3 cut(s)	117, 557, 882
StuI	AGGCCT	2 cut(s)	821, 871
StyD4I	CCNGG	3 cut(s)	465, 568, 1147
StyI	CCWWGG	2 cut(s)	150, 1104
TaaI	ACNGT	4 cut(s)	246, 991, 1043, 1176
TaqI	TCGA	4 cut(s)	191, 238, 635, 1064
TasI	AATT	7 cut(s)	184, 266, 318, 476, 791, 904, 1017
TatI	WGTACW	2 cut(s)	583, 1171
TauI	GCSGC	1 cut(s)	312
TfiI	GAWTC	5 cut(s)	340, 412, 520, 679, 1058
Tru1I	TTAA	3 cut(s)	210, 272, 794
Tru9I	TTAA	3 cut(s)	210, 272, 794
TscAI	CASTG	3 cut(s)	251, 994, 1048
TseI	GCWGC	3 cut(s)	205, 505, 592
TspDTI	ATGAA	4 cut(s)	311, 875, 926, 1040
TspGWI	ACGGA	1 cut(s)	389
TspRI	CASTG	3 cut(s)	251, 994, 1048
Vha464I	CTTAAG	1 cut(s)	271
VpaK11BI	GGWCC	1 cut(s)	712
XapI	RAATTY	3 cut(s)	266, 476, 904
XmnI	GAANNNNTTC	2 cut(s)	159, 756
XspI	CTAG	3 cut(s)	117, 557, 882

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.