Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002221

Physical Location & Seq

Genomic Coordinates Forward (+)

32835364 .. 32836160

Gene Structure 797 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0296200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGAACTATTTATTCTTCTCGGTGAGGATCTCCAACATCCCACCTGCGTTTGAGGACCTAGACATGATCCAAGCTATTGCTTCTGTGGCGGGAAAGTTCTTAGAGATGGATGACAAACTTTTCGACACTGTGGGTAAAGTTAGGGTTCGAGTTGGTCATGAATTGTCCAAACCCTTCTTTATGCAGAAAACGCTCCGCCTTGCTCCGGGGATAGAAGCGGATATATCCTTCTTCTTCGAAAACTTGGTAGGTATGTGCAACTCCTGCCATTTTCTGATGCATGATGGGAATCAGTGTCCAGTTAGTGAGGTGGATACTATACATACTGGTGTCCGAGCCAATGTTGATAAGAGAGTGGAGATCACTGCTCCATCGTTGAGTTTTAATGCAGATAATTCACTGGCCTTAGTCCCAGTCTCGGATCCTCATGATAATGCTGGGATTGAACCTATTGTGCCGGTTCTCATTGAAGATGATAAAGATACGGGGCAGTCTGATGAGAAGTTGGAGAGTGACGCAGATGTTCCTGCCAAGGTGGAGCCAAGAATTGAGAAGAGGGTATGCCTTCCCACCTCTGAGGCCTCTCCCAAAAAGCTGAAGATTTTGCTCCCGAACTTGTTCAAACAAGTGGATATGCATGATGCTCCAACAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04212 ko05134 map04212 map05134

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

218

Amino Acids

24.16

Weight (kDa)

4.96

Isoelectric Point (pI)

45.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18880 AT5G45710 AT5G45710 AT5G45710 AT5G45710
fragaria_vesca	FvH4_3g07170 FvH4_3g07170 FvH4_6g27900
malus_domestica	MD00G1007800.v1.1 MD09G1233700.v1.1 MD10G1274400.v1.1 MD17G1230100.v1.1
prunus_persica	Prupe.3G108700_v2.0.a1 Prupe.3G108700_v2.0.a1 Prupe.4G068100_v2.0.a1 Prupe.4G068100_v2.0.a1 Prupe.4G068100_v2.0.a1 Prupe.4G068100_v2.0.a1 Prupe.4G068100_v2.0.a1
pyrus_communis	pycom05g27300 pycom09g15200 pycom10g22900 pycom17g23300
rosa_chinensis	RchiOBHm_Chr2g0131371 RchiOBHm_Chr5g0011961
rosa_laevigata	RLG00000019181 RLG00000031873
rosa_multiflora	Rmu_sc0001475.1_g000001 Rmu_ssc0000009.1_g000034
rosa_roxburghii	Rroxscaffold_1G00064630 Rroxscaffold_2G00113040
rosa_rugosa	Rorug02G0296200 Rorug04G0460200
rosa_samantha	Rh2AG349500 Rh2BG356400 Rh2CG335300 Rh2DG374300 Rh5AG091800 Rh5BG087700 Rh5CG101500 Rh5DG088300
rosa_wichuraiana	Rw2G028360 Rw5G008020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	52
Acc36I	ACCTGC	1 cut(s)	52
AciI	CCGC	3 cut(s)	89, 196, 218
AclWI	GGATC	4 cut(s)	35, 61, 416, 429
AcuI	CTGAAG	1 cut(s)	617
AfiI	CCNNNNNNNGG	2 cut(s)	205, 418
AgsI	TTSAA	3 cut(s)	446, 470, 622
AluBI	AGCT	2 cut(s)	74, 595
AluI	AGCT	2 cut(s)	74, 595
Alw26I	GTCTC	1 cut(s)	421
AlwI	GGATC	4 cut(s)	35, 61, 416, 429
AoxI	GGCC	2 cut(s)	402, 579
ArsI	GACNNNNNNTTYG	2 cut(s)	104, 136
Asp700I	GAANNNNTTC	1 cut(s)	617
AspS9I	GGNCC	1 cut(s)	55
AsuC2I	CCSGG	1 cut(s)	207
AsuHPI	GGTGA	1 cut(s)	34
AsuII	TTCGAA	1 cut(s)	237
AvaII	GGWCC	1 cut(s)	55
BamHI	GGATCC	1 cut(s)	421
BccI	CCATC	3 cut(s)	100, 278, 379
BciVI	GTATCC	1 cut(s)	307
BcnI	CCSGG	1 cut(s)	207
BcoDI	GTCTC	1 cut(s)	421
BfaI	CTAG	1 cut(s)	59
BfuAI	ACCTGC	1 cut(s)	52
BfuI	GTATCC	1 cut(s)	307
Bme1390I	CCNGG	1 cut(s)	207
Bme18I	GGWCC	1 cut(s)	55
BmgT120I	GGNCC	1 cut(s)	55
BmiI	GGNNCC	2 cut(s)	423, 540
BmrFI	CCNGG	1 cut(s)	207
BmrI	ACTGGG	1 cut(s)	407
BmsI	GCATC	2 cut(s)	267, 631
BmuI	ACTGGG	1 cut(s)	407
Bpu14I	TTCGAA	1 cut(s)	237
BpuMI	CCSGG	1 cut(s)	207
BsaBI	GATNNNNATC	1 cut(s)	288
BsaJI	CCNNGG	2 cut(s)	206, 531
Bsc4I	CCNNNNNNNGG	2 cut(s)	205, 418
Bse118I	RCCGGY	1 cut(s)	457
Bse1I	ACTGG	4 cut(s)	299, 331, 405, 413
Bse8I	GATNNNNATC	1 cut(s)	288
BseDI	CCNNGG	2 cut(s)	206, 531
BseGI	GGATG	2 cut(s)	36, 115
BseJI	GATNNNNATC	1 cut(s)	288
BseLI	CCNNNNNNNGG	2 cut(s)	205, 418
BseMII	CTCAG	1 cut(s)	567
BseNI	ACTGG	4 cut(s)	299, 331, 405, 413
BseYI	CCCAGC	1 cut(s)	437
BshFI	GGCC	2 cut(s)	404, 581
BsiSI	CCGG	2 cut(s)	206, 458
BslFI	GGGAC	1 cut(s)	395
BslI	CCNNNNNNNGG	2 cut(s)	205, 418
BsmAI	GTCTC	1 cut(s)	421
BsmFI	GGGAC	1 cut(s)	395
BsnI	GGCC	2 cut(s)	404, 581
Bsp119I	TTCGAA	1 cut(s)	237
Bsp143I	GATC	4 cut(s)	27, 66, 360, 421
BspACI	CCGC	3 cut(s)	89, 196, 218
BspANI	GGCC	2 cut(s)	404, 581
BspCNI	CTCAG	1 cut(s)	568
BspHI	TCATGA	2 cut(s)	157, 427
BspLI	GGNNCC	2 cut(s)	423, 540
BspMI	ACCTGC	1 cut(s)	52
BspPI	GGATC	4 cut(s)	35, 61, 416, 429
BspT104I	TTCGAA	1 cut(s)	237
BsrFI	RCCGGY	1 cut(s)	457
BsrI	ACTGG	4 cut(s)	299, 331, 405, 413
BssAI	RCCGGY	1 cut(s)	457
BssECI	CCNNGG	2 cut(s)	206, 531
BssMI	GATC	4 cut(s)	27, 66, 360, 421
BssT1I	CCWWGG	1 cut(s)	531
Bst4CI	ACNGT	1 cut(s)	130
Bst6I	CTCTTC	1 cut(s)	548
BstAPI	GCANNNNNTGC	1 cut(s)	264
BstBI	TTCGAA	1 cut(s)	237
BstDEI	CTNAG	3 cut(s)	100, 406, 576
BstF5I	GGATG	2 cut(s)	36, 115
BstKTI	GATC	4 cut(s)	30, 69, 363, 424
BstMAI	GTCTC	1 cut(s)	421
BstMBI	GATC	4 cut(s)	27, 66, 360, 421
BstMWI	GCNNNNNNNGC	3 cut(s)	86, 190, 264
BstSCI	CCNGG	1 cut(s)	205
BstX2I	RGATCY	2 cut(s)	27, 421
BstYI	RGATCY	2 cut(s)	27, 421
BsuI	GTATCC	1 cut(s)	307
BsuRI	GGCC	2 cut(s)	404, 581
BtsCI	GGATG	2 cut(s)	36, 115
BtsI	GCAGTG	1 cut(s)	363
BtsIMutI	CAGTG	4 cut(s)	126, 299, 363, 398
BveI	ACCTGC	1 cut(s)	52
CciI	TCATGA	2 cut(s)	157, 427
Cfr10I	RCCGGY	1 cut(s)	457
Cfr13I	GGNCC	1 cut(s)	55
CseI	GACGC	1 cut(s)	524
CviAII	CATG	5 cut(s)	64, 158, 281, 428, 638
CviJI	RGCY	6 cut(s)	74, 338, 404, 541, 581, 595
CviKI_1	RGCY	6 cut(s)	74, 338, 404, 541, 581, 595
DdeI	CTNAG	3 cut(s)	100, 406, 576
DpnI	GATC	4 cut(s)	29, 68, 362, 423
DpnII	GATC	4 cut(s)	27, 66, 360, 421
Eam1104I	CTCTTC	1 cut(s)	548
EarI	CTCTTC	1 cut(s)	548
EciI	GGCGGA	1 cut(s)	185
Eco130I	CCWWGG	1 cut(s)	531
Eco147I	AGGCCT	1 cut(s)	581
Eco47I	GGWCC	1 cut(s)	55
Eco57I	CTGAAG	1 cut(s)	617
EcoO109I	RGGNCCY	1 cut(s)	55
EcoT14I	CCWWGG	1 cut(s)	531
EcoT22I	ATGCAT	2 cut(s)	282, 639
ErhI	CCWWGG	1 cut(s)	531
FaeI	CATG	5 cut(s)	67, 161, 284, 431, 641
FaqI	GGGAC	1 cut(s)	395
FatI	CATG	5 cut(s)	63, 157, 280, 427, 637
FauI	CCCGC	1 cut(s)	82
FokI	GGATG	2 cut(s)	23, 122
FspBI	CTAG	1 cut(s)	59
GsaI	CCCAGC	1 cut(s)	441
HaeIII	GGCC	2 cut(s)	404, 581
HapII	CCGG	2 cut(s)	206, 458
HgaI	GACGC	1 cut(s)	524
Hin1II	CATG	5 cut(s)	67, 161, 284, 431, 641
HinfI	GANTC	1 cut(s)	289
HpaII	CCGG	2 cut(s)	206, 458
HphI	GGTGA	1 cut(s)	34
Hpy188I	TCNGA	5 cut(s)	276, 335, 421, 496, 577
Hpy188III	TCNNGA	3 cut(s)	158, 428, 610
HpyAV	CCTTC	3 cut(s)	184, 238, 575
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4V	TGCA	5 cut(s)	184, 258, 280, 389, 637
HpyF10VI	GCNNNNNNNGC	3 cut(s)	86, 190, 264
HpyF3I	CTNAG	3 cut(s)	100, 406, 576
Hsp92II	CATG	5 cut(s)	67, 161, 284, 431, 641
Kzo9I	GATC	4 cut(s)	27, 66, 360, 421
LmnI	GCTCC	6 cut(s)	198, 208, 373, 538, 612, 649
LweI	GCATC	2 cut(s)	267, 631
MaeI	CTAG	1 cut(s)	59
MaeIII	GTNAC	1 cut(s)	512
MalI	GATC	4 cut(s)	29, 68, 362, 423
MboI	GATC	4 cut(s)	27, 66, 360, 421
MboII	GAAGA	6 cut(s)	7, 223, 226, 482, 565, 610
MflI	RGATCY	2 cut(s)	27, 421
MluCI	AATT	3 cut(s)	161, 394, 546
MmeI	TCCRAC	2 cut(s)	57, 486
MnlI	CCTC	8 cut(s)	18, 46, 301, 435, 549, 571, 583, 592
Mph1103I	ATGCAT	2 cut(s)	282, 639
MroXI	GAANNNNTTC	1 cut(s)	617
MseI	TTAA	1 cut(s)	384
MslI	CAYNNNNRTG	2 cut(s)	327, 432
MspI	CCGG	2 cut(s)	206, 458
MspR9I	CCNGG	1 cut(s)	207
MwoI	GCNNNNNNNGC	3 cut(s)	86, 190, 264
NciI	CCSGG	1 cut(s)	207
NdeII	GATC	4 cut(s)	27, 66, 360, 421
NlaIII	CATG	5 cut(s)	67, 161, 284, 431, 641
NlaIV	GGNNCC	2 cut(s)	423, 540
NmuCI	GTSAC	1 cut(s)	512
NsiI	ATGCAT	2 cut(s)	282, 639
NspV	TTCGAA	1 cut(s)	237
PagI	TCATGA	2 cut(s)	157, 427
PaqCI	CACCTGC	1 cut(s)	52
PceI	AGGCCT	1 cut(s)	581
PdmI	GAANNNNTTC	1 cut(s)	617
PfeI	GAWTC	1 cut(s)	289
PpuMI	RGGWCCY	1 cut(s)	55
Psp5II	RGGWCCY	1 cut(s)	55
PspFI	CCCAGC	1 cut(s)	437
PspN4I	GGNNCC	2 cut(s)	423, 540
PspPI	GGNCC	1 cut(s)	55
PspPPI	RGGWCCY	1 cut(s)	55
PsuI	RGATCY	2 cut(s)	27, 421
RseI	CAYNNNNRTG	2 cut(s)	327, 432
SaqAI	TTAA	1 cut(s)	384
Sau3AI	GATC	4 cut(s)	27, 66, 360, 421
Sau96I	GGNCC	1 cut(s)	55
ScrFI	CCNGG	1 cut(s)	207
SetI	ASST	9 cut(s)	46, 60, 76, 253, 312, 451, 537, 575, 597
SfaNI	GCATC	2 cut(s)	267, 631
SfuI	TTCGAA	1 cut(s)	237
SinI	GGWCC	1 cut(s)	55
SmiMI	CAYNNNNRTG	2 cut(s)	327, 432
Sse9I	AATT	3 cut(s)	161, 394, 546
SseBI	AGGCCT	1 cut(s)	581
SsiI	CCGC	3 cut(s)	89, 196, 218
SspMI	CTAG	1 cut(s)	59
StuI	AGGCCT	1 cut(s)	581
StyD4I	CCNGG	1 cut(s)	205
StyI	CCWWGG	1 cut(s)	531
TaaI	ACNGT	1 cut(s)	130
TaqI	TCGA	3 cut(s)	123, 148, 237
TasI	AATT	3 cut(s)	161, 394, 546
TfiI	GAWTC	1 cut(s)	289
Tru1I	TTAA	1 cut(s)	384
Tru9I	TTAA	1 cut(s)	384
TscAI	CASTG	4 cut(s)	133, 299, 370, 405
TseFI	GTSAC	1 cut(s)	512
Tsp45I	GTSAC	1 cut(s)	512
TspDTI	ATGAA	2 cut(s)	17, 174
TspRI	CASTG	4 cut(s)	133, 299, 370, 405
VpaK11BI	GGWCC	1 cut(s)	55
XmnI	GAANNNNTTC	1 cut(s)	617
XspI	CTAG	1 cut(s)	59
Zsp2I	ATGCAT	2 cut(s)	282, 639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.