FvH4_3g07170

Heat Stress Transcription Factor

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
4252566 .. 4255637
3072 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g07170.t2

Sequence Viewer

Length: 1494 bp
ATGGATGAAGTTCAAGGCATTACTGGATCTTTACCTCCTTTTCTTTCCAAGACGTACGAAATGGTGGATGATTCGTCCACTGATTCAATTGTGTCTTGGAGTGCTGGTGATAAAAGCTTCATTGTGTGGAACCCTCCAGAGTTTGCCAGAGATTTGCTGCCCAAGTATTTTAAGCACAACAACTTCTCTAGCTTCATTAGGCAGCTCAACACATATGGTTTTCGAAAGATTGATCCGGAACAATGGGAATTTGCGAATGATGATTTTGTTAGAGGCCAGCCGCAGCTTATGAAGAGCATCCATAGACGAAAGCCGGTGCATAGTCATTCTTTGCCGAACCTGCAGGTACAAGAACAAGGGAGTTCATCGTTATCCGAAGCCGAAAGAAAGAGTATGAAGGATGAAATTGAGAGGCTTAACCATGAAAAAGAATGCCTTGCAGTGGAGTTACAGAGACATGAGCAGGAAAGGCAGGGAATGGAGTTGCAAATGCAGTTCTTGAAGGACCGCTTGCAACATATGCAAGAGCAGCAGCAATCCATGGTGGCATTTGTGGCCCGAGTTTTGCAGAGACCGGAGCTTGCCTCAAATCCTGTACCGCAGTTTGAACTCCGTGACCGAAAGAGGAGGTTTTCAAGTGTCGATTGGGCCTATGATAATGTCAGCATTGGGAATGGTCAGATGGGGAGTTGGCAAAATGTGACTAGAGAAAATATGGAGATGGGAAAGGTACTGGAGTTGGAGTCATTCCTGACATTTTGGGAAGATACTATTCGTGAAGTTGGCCAGACTCAACTTCATGCTAGTACTAACTTGGAGTTGGCTGAATCTACGAGCTGTGGCGAAAGCCCAGCTGTATCCTGCATGCAACGTAGTGTTGGCCATCAATATAAATTGCCAGCAATTGATATGAATTCGGAGCCTGCTGCAGCTGTTTCGCCTGTGCTTGCTGAAAGTGTTTCTCCTGTACCTGCTGGGAGTGTTTCTGCCGAGCCTGCTAGAAGTGTTTCTCCCGAACCGGCTAGAAGCGTTTCTCCCGAGCCTGCTAGAAGTGTTTCTCTTGAGCCTGCTAGAAGCGTTTCTCTTGAGCCGGCTATAAGCGTTTCTCTTGAGCCTGCTAGAAGCGTTTCTCTTGAGCCTGCTAGAAGCGTTTCTCTTGAGCCTGCTAGAAGCGTTTCTCTTGAGCCTGCTAGAAGTGTTTCTTTTGAGCCTGCTAGAAGTGTTTCTTTTGAGCTTGATGCCTCAAAACAAACCTCAAAAGAACAAACAGCAAAACTTTCTGGTGCTGGTGTCAATGACATGTTTTGGGAACAGTTCTTGACAGAGAATCCCGGTTCAACTGACTCGCAGGAAGTACAGTTGGAAAGAAAGGATTCTGATGGTAGGGGGAACGAATTTAGTGCCAGTGAGCATGGCAAGTCGTGGTGGAGTATGAGGAATGTAAATAACCTTACAGAACAGATGGGTCATCTTAGTTCAGTAGAGAACACATGA

Protein Analysis

498

Amino Acids

55.72

Weight (kDa)

5.13

Isoelectric Point (pI)

60.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSF_DNA-bind PF00447 14 - 103 3.5e-30 HSF-type DNA-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 334, 348, 979
AccIII TCCGGA 1 cut(s) 235
AciI CCGC 3 cut(s) 281, 508, 599
AclWI GGATC 2 cut(s) 34, 227
AcoI YGGCCR 2 cut(s) 784, 880
AcsI RAATTY 3 cut(s) 248, 913, 1394
AfaI GTAC 7 cut(s) 56, 348, 597, 732, 808, 969, 1356
AfiI CCNNNNNNNGG 1 cut(s) 442
AflIII ACRYGT 1 cut(s) 1299
AgsI TTSAA 6 cut(s) 14, 87, 502, 608, 636, 1338
AluBI AGCT 9 cut(s) 117, 192, 205, 286, 580, 837, 854, 932, 1234
AluI AGCT 9 cut(s) 117, 192, 205, 286, 580, 837, 854, 932, 1234
Alw26I GTCTC 2 cut(s) 448, 565
AlwI GGATC 2 cut(s) 34, 227
Ama87I CYCGRG 2 cut(s) 558, 1037
Aor13HI TCCGGA 1 cut(s) 235
AoxI GGCC 5 cut(s) 274, 555, 648, 784, 880
ApeKI GCWGC 7 cut(s) 157, 202, 283, 529, 532, 926, 929
ApoI RAATTY 3 cut(s) 248, 913, 1394
AspS9I GGNCC 3 cut(s) 505, 556, 648
AsuC2I CCSGG 1 cut(s) 1332
AsuHPI GGTGA 1 cut(s) 119
AsuII TTCGAA 1 cut(s) 223
AvaI CYCGRG 2 cut(s) 558, 1037
AvaII GGWCC 1 cut(s) 505
BaeI ACNNNNGTAYC 2 cut(s) 722, 755
BalI TGGCCA 2 cut(s) 786, 882
BbvI GCAGC 7 cut(s) 144, 214, 295, 541, 544, 913, 941
BccI CCATC 5 cut(s) 676, 715, 891, 1373, 1456
BcgI CGANNNNNNTGC 4 cut(s) 918, 952, 1382, 1416
BciVI GTATCC 1 cut(s) 868
BcnI CCSGG 1 cut(s) 1332
BcoDI GTCTC 2 cut(s) 448, 565
BfmI CTRYAG 2 cut(s) 341, 927
BfuAI ACCTGC 3 cut(s) 334, 348, 979
BfuI GTATCC 1 cut(s) 868
BisI GCNGC 8 cut(s) 158, 203, 281, 284, 530, 533, 927, 930
BlsI GCNGC 8 cut(s) 159, 204, 282, 285, 531, 534, 928, 931
BmcAI AGTACT 1 cut(s) 808
Bme1390I CCNGG 1 cut(s) 1332
Bme18I GGWCC 1 cut(s) 505
BmeT110I CYCGRG 2 cut(s) 558, 1037
BmgT120I GGNCC 3 cut(s) 505, 556, 648
BmiI GGNNCC 2 cut(s) 131, 921
BmrFI CCNGG 1 cut(s) 1332
BmsI GCATC 2 cut(s) 306, 1228
BplI GAGNNNNNCTC 2 cut(s) 569, 601
BpmI CTGGAG 2 cut(s) 120, 755
Bpu14I TTCGAA 1 cut(s) 223
BpuEI CTTGAG 6 cut(s) 1082, 1106, 1130, 1154, 1178, 1202
BpuMI CCSGG 1 cut(s) 1332
BsaI GGTCTC 1 cut(s) 565
BsaJI CCNNGG 1 cut(s) 540
BsaWI WCCGGW 2 cut(s) 235, 574
BsaXI ACNNNNNCTCC 4 cut(s) 91, 121, 728, 758
Bsc4I CCNNNNNNNGG 1 cut(s) 442
Bse118I RCCGGY 3 cut(s) 313, 1018, 1090
Bse1I ACTGG 3 cut(s) 28, 738, 1404
BseAI TCCGGA 1 cut(s) 235
BseDI CCNNGG 1 cut(s) 540
BseGI GGATG 4 cut(s) 10, 73, 297, 406
BseLI CCNNNNNNNGG 1 cut(s) 442
BseNI ACTGG 3 cut(s) 28, 738, 1404
BseRI GAGGAG 1 cut(s) 640
BseXI GCAGC 7 cut(s) 144, 214, 295, 541, 544, 913, 941
BseYI CCCAGC 2 cut(s) 850, 974
BshFI GGCC 5 cut(s) 276, 557, 650, 786, 882
BsiHKCI CYCGRG 2 cut(s) 558, 1037
BsiSI CCGG 6 cut(s) 236, 314, 575, 1019, 1091, 1332
BsiWI CGTACG 1 cut(s) 54
BslI CCNNNNNNNGG 1 cut(s) 442
BsmAI GTCTC 2 cut(s) 448, 565
BsmI GAATGC 1 cut(s) 437
BsnI GGCC 5 cut(s) 276, 557, 650, 786, 882
Bso31I GGTCTC 1 cut(s) 565
BsoBI CYCGRG 2 cut(s) 558, 1037
Bsp119I TTCGAA 1 cut(s) 223
Bsp13I TCCGGA 1 cut(s) 235
Bsp143I GATC 2 cut(s) 26, 232
Bsp19I CCATGG 1 cut(s) 540
BspACI CCGC 3 cut(s) 281, 508, 599
BspANI GGCC 5 cut(s) 276, 557, 650, 786, 882
BspEI TCCGGA 1 cut(s) 235
BspLI GGNNCC 2 cut(s) 131, 921
BspMAI CTGCAG 2 cut(s) 345, 931
BspMI ACCTGC 3 cut(s) 334, 348, 979
BspPI GGATC 2 cut(s) 34, 227
BspQI GCTCTTC 1 cut(s) 287
BspT104I TTCGAA 1 cut(s) 223
BspTNI GGTCTC 1 cut(s) 565
BsrFI RCCGGY 3 cut(s) 313, 1018, 1090
BsrI ACTGG 3 cut(s) 28, 738, 1404
BssAI RCCGGY 3 cut(s) 313, 1018, 1090
BssECI CCNNGG 1 cut(s) 540
BssMI GATC 2 cut(s) 26, 232
BssT1I CCWWGG 1 cut(s) 540
Bst4CI ACNGT 2 cut(s) 1314, 1359
Bst6I CTCTTC 1 cut(s) 287
BstAPI GCANNNNNTGC 1 cut(s) 520
BstBI TTCGAA 1 cut(s) 223
BstDEI CTNAG 1 cut(s) 1472
BstDSI CCRYGG 1 cut(s) 540
BstF5I GGATG 4 cut(s) 10, 73, 297, 406
BstKTI GATC 2 cut(s) 29, 235
BstMAI GTCTC 2 cut(s) 448, 565
BstMBI GATC 2 cut(s) 26, 232
BstMWI GCNNNNNNNGC 6 cut(s) 340, 469, 520, 529, 554, 995
BstNSI RCATGY 2 cut(s) 868, 1303
BstSCI CCNGG 1 cut(s) 1330
BstSFI CTRYAG 2 cut(s) 341, 927
BstV1I GCAGC 7 cut(s) 144, 214, 295, 541, 544, 913, 941
BstX2I RGATCY 1 cut(s) 26
BstYI RGATCY 1 cut(s) 26
BsuI GTATCC 1 cut(s) 868
BsuRI GGCC 5 cut(s) 276, 557, 650, 786, 882
BtgI CCRYGG 1 cut(s) 540
BtsCI GGATG 4 cut(s) 10, 73, 297, 406
BtsI GCAGTG 1 cut(s) 447
BtsIMutI CAGTG 3 cut(s) 78, 447, 1411
BveI ACCTGC 3 cut(s) 334, 348, 979
Cfr10I RCCGGY 3 cut(s) 313, 1018, 1090
Cfr13I GGNCC 3 cut(s) 505, 556, 648
Csp6I GTAC 7 cut(s) 55, 347, 596, 731, 807, 968, 1355
CviAII CATG 8 cut(s) 422, 458, 541, 800, 865, 1300, 1412, 1491
CviQI GTAC 7 cut(s) 55, 347, 596, 731, 807, 968, 1355
DdeI CTNAG 1 cut(s) 1472
DpnI GATC 2 cut(s) 28, 234
DpnII GATC 2 cut(s) 26, 232
EaeI YGGCCR 2 cut(s) 784, 880
Eam1104I CTCTTC 1 cut(s) 287
EarI CTCTTC 1 cut(s) 287
Eco130I CCWWGG 1 cut(s) 540
Eco31I GGTCTC 1 cut(s) 565
Eco47I GGWCC 1 cut(s) 505
Eco88I CYCGRG 2 cut(s) 558, 1037
EcoRI GAATTC 1 cut(s) 913
EcoT14I CCWWGG 1 cut(s) 540
ErhI CCWWGG 1 cut(s) 540
FaeI CATG 8 cut(s) 425, 461, 544, 803, 868, 1303, 1415, 1494
FalI AAGNNNNNCTT 8 cut(s) 420, 452, 494, 526, 1186, 1218, 1210, 1242
FatI CATG 8 cut(s) 421, 457, 540, 799, 864, 1299, 1411, 1490
FauNDI CATATG 2 cut(s) 214, 519
Fnu4HI GCNGC 8 cut(s) 158, 203, 281, 284, 530, 533, 927, 930
FokI GGATG 4 cut(s) 17, 80, 284, 413
Fsp4HI GCNGC 8 cut(s) 158, 203, 281, 284, 530, 533, 927, 930
GluI GCNGC 8 cut(s) 158, 203, 281, 284, 530, 533, 927, 930
GsaI CCCAGC 2 cut(s) 854, 978
GsuI CTGGAG 2 cut(s) 120, 755
HaeIII GGCC 5 cut(s) 276, 557, 650, 786, 882
HapII CCGG 6 cut(s) 236, 314, 575, 1019, 1091, 1332
Hin1II CATG 8 cut(s) 425, 461, 544, 803, 868, 1303, 1415, 1494
HindIII AAGCTT 1 cut(s) 115
HinfI GANTC 8 cut(s) 71, 83, 743, 790, 827, 1327, 1343, 1373
HpaII CCGG 6 cut(s) 236, 314, 575, 1019, 1091, 1332
HphI GGTGA 1 cut(s) 119
Hpy166II GTNNAC 1 cut(s) 78
Hpy188I TCNGA 4 cut(s) 376, 681, 919, 1378
Hpy8I GTNNAC 1 cut(s) 78
HpyAV CCTTC 2 cut(s) 391, 496
HpyCH4III ACNGT 2 cut(s) 1314, 1359
HpyCH4IV ACGT 2 cut(s) 53, 871
HpyF10VI GCNNNNNNNGC 6 cut(s) 340, 469, 520, 529, 554, 995
HpyF3I CTNAG 1 cut(s) 1472
HpySE526I ACGT 2 cut(s) 53, 871
Hsp92II CATG 8 cut(s) 425, 461, 544, 803, 868, 1303, 1415, 1494
Kpn2I TCCGGA 1 cut(s) 235
KroI GCCGGC 1 cut(s) 1090
KroNI GCCGGC 1 cut(s) 1092
Kzo9I GATC 2 cut(s) 26, 232
LguI GCTCTTC 1 cut(s) 287
LmnI GCTCC 2 cut(s) 577, 919
Lsp1109I GCAGC 7 cut(s) 144, 214, 295, 541, 544, 913, 941
LweI GCATC 2 cut(s) 306, 1228
MaeII ACGT 2 cut(s) 53, 871
MaeIII GTNAC 3 cut(s) 447, 614, 700
MalI GATC 2 cut(s) 28, 234
MboI GATC 2 cut(s) 26, 232
MboII GAAGA 2 cut(s) 304, 776
MfeI CAATTG 2 cut(s) 87, 903
MflI RGATCY 1 cut(s) 26
MlsI TGGCCA 2 cut(s) 786, 882
MluCI AATT 7 cut(s) 87, 248, 405, 893, 903, 913, 1394
MluNI TGGCCA 2 cut(s) 786, 882
MlyI GAGTC 3 cut(s) 752, 784, 1337
MmeI TCCRAC 2 cut(s) 720, 1341
Mox20I TGGCCA 2 cut(s) 786, 882
MroI TCCGGA 1 cut(s) 235
MroNI GCCGGC 1 cut(s) 1090
MscI TGGCCA 2 cut(s) 786, 882
MseI TTAA 2 cut(s) 171, 417
Msp20I TGGCCA 2 cut(s) 786, 882
MspA1I CMGCKG 2 cut(s) 854, 932
MspI CCGG 6 cut(s) 236, 314, 575, 1019, 1091, 1332
MspR9I CCNGG 1 cut(s) 1332
MunI CAATTG 2 cut(s) 87, 903
Mva1269I GAATGC 1 cut(s) 437
MwoI GCNNNNNNNGC 6 cut(s) 340, 469, 520, 529, 554, 995
NaeI GCCGGC 1 cut(s) 1092
NciI CCSGG 1 cut(s) 1332
NcoI CCATGG 1 cut(s) 540
NdeI CATATG 2 cut(s) 214, 519
NdeII GATC 2 cut(s) 26, 232
NgoMIV GCCGGC 1 cut(s) 1090
NlaIII CATG 8 cut(s) 425, 461, 544, 803, 868, 1303, 1415, 1494
NlaIV GGNNCC 2 cut(s) 131, 921
NmeAIII GCCGAG 1 cut(s) 1015
NmuCI GTSAC 2 cut(s) 614, 700
NspI RCATGY 2 cut(s) 868, 1303
NspV TTCGAA 1 cut(s) 223
PaeI GCATGC 1 cut(s) 868
PciI ACATGT 1 cut(s) 1299
PciSI GCTCTTC 1 cut(s) 287
PctI GAATGC 1 cut(s) 437
PdiI GCCGGC 1 cut(s) 1092
PfeI GAWTC 5 cut(s) 71, 83, 827, 1327, 1373
Pfl23II CGTACG 1 cut(s) 54
PkrI GCNGC 8 cut(s) 159, 204, 282, 285, 531, 534, 928, 931
PleI GAGTC 3 cut(s) 751, 784, 1337
PpsI GAGTC 3 cut(s) 751, 784, 1337
PscI ACATGT 1 cut(s) 1299
PspFI CCCAGC 2 cut(s) 850, 974
PspLI CGTACG 1 cut(s) 54
PspN4I GGNNCC 2 cut(s) 131, 921
PspPI GGNCC 3 cut(s) 505, 556, 648
PstI CTGCAG 2 cut(s) 345, 931
PsuI RGATCY 1 cut(s) 26
PvuII CAGCTG 2 cut(s) 854, 932
RsaI GTAC 7 cut(s) 56, 348, 597, 732, 808, 969, 1356
RsaNI GTAC 7 cut(s) 55, 347, 596, 731, 807, 968, 1355
SapI GCTCTTC 1 cut(s) 287
SaqAI TTAA 2 cut(s) 171, 417
SatI GCNGC 8 cut(s) 158, 203, 281, 284, 530, 533, 927, 930
Sau3AI GATC 2 cut(s) 26, 232
Sau96I GGNCC 3 cut(s) 505, 556, 648
SbfI CCTGCAGG 1 cut(s) 345
ScaI AGTACT 1 cut(s) 808
SchI GAGTC 3 cut(s) 752, 784, 1337
ScrFI CCNGG 1 cut(s) 1332
SdaI CCTGCAGG 1 cut(s) 345
SfaNI GCATC 2 cut(s) 306, 1228
SfcI CTRYAG 2 cut(s) 341, 927
SfuI TTCGAA 1 cut(s) 223
SinI GGWCC 1 cut(s) 505
SmlI CTYRAG 6 cut(s) 1061, 1085, 1109, 1133, 1157, 1181
SmoI CTYRAG 6 cut(s) 1061, 1085, 1109, 1133, 1157, 1181
SphI GCATGC 1 cut(s) 868
Sse8387I CCTGCAGG 1 cut(s) 345
Sse9I AATT 7 cut(s) 87, 248, 405, 893, 903, 913, 1394
SsiI CCGC 3 cut(s) 281, 508, 599
StyD4I CCNGG 1 cut(s) 1330
StyI CCWWGG 1 cut(s) 540
TaaI ACNGT 2 cut(s) 1314, 1359
TaiI ACGT 2 cut(s) 56, 874
TaqI TCGA 2 cut(s) 223, 642
TaqII GACCGA 1 cut(s) 633
TasI AATT 7 cut(s) 87, 248, 405, 893, 903, 913, 1394
TatI WGTACW 2 cut(s) 806, 1354
TauI GCSGC 1 cut(s) 283
TfiI GAWTC 5 cut(s) 71, 83, 827, 1327, 1373
Tru1I TTAA 2 cut(s) 171, 417
Tru9I TTAA 2 cut(s) 171, 417
TscAI CASTG 3 cut(s) 85, 447, 1411
TseFI GTSAC 2 cut(s) 614, 700
TseI GCWGC 7 cut(s) 157, 202, 283, 529, 532, 926, 929
Tsp45I GTSAC 2 cut(s) 614, 700
TspGWI ACGGA 1 cut(s) 602
TspRI CASTG 3 cut(s) 85, 447, 1411
VpaK11BI GGWCC 1 cut(s) 505
XapI RAATTY 3 cut(s) 248, 913, 1394
XceI RCATGY 2 cut(s) 868, 1303
ZrmI AGTACT 1 cut(s) 808
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.