Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0002221

Physical Location & Seq

Genomic Coordinates Forward (+)

21666567 .. 21667556

Gene Structure 990 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g23300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGCAGAATCACGAGTATACAGTTGCTTTACGTGATACAGAGAGAGAAGAATATGAGAAGAAAATCAGTAGACTAAATCATGATAAAAGCTTGCTTGAGTTGGAGCTACAGCGGCATCAAAGAGAGAATCAGGAGTTTGAATTTCAAGTACAGATATTACGAGAACAACTGCAGAACATGGAGAATCGGCAGAAGCAATATACGGCCTTCTTGGCTCAACTAGTGCAGAAACCGGGATTTGCTTCTGTACTTGTGCAGCAGTCAGAAATCCATAGCAAAAAGAGAAGATTACTGAATTCTAACCACTTTCCTGATGACTTTGGTATGGAAGGTTTGAATTTGAATCCGCAGAAAGAAAATTTGGGATCAATTTCAACTCCCATAATAAAGTTGGACCAGCTTGAGAAGATGGAGTCTTCCTTAAACTTTTGGGAAGATTTTGTCCATGGGATTGGGGAAGCAATGCCCGAAGATGTAAATGATATTTGCCCGTTGTCTCAGGCCTCTCCTATCATTGTTACCGAAATACAAGACACCAGCATGAATAGCAGGCCTTGCTCACCTCGATCACATTTATCTTCACCGAATTCAATGAATGCTCATTCATTCCCAGAGGTGGCGGCTGGGTCTGCAAATATTCTTGACATCCTTGCTATAACATCAATGTGCCCCACTGTTGATTTCAGGTCTAAATCTTCACGAATCGATATGAACTCTAAGCCTGACAGTGCCCCTGCACTTGCCAAAGAAATGGTAGTGGAACTGGAAGTGAAAAATGCCGCGCCTACCAAGGCAAATGATGTATTTTGGGAACAGTGCCTAACAGAGACCCCTGGTTTAGCTGATGCGCCGGAAGTACTGTCAGAAAGAAGGGATGGCGATGGCAAAGCGAGGGATGCCAATCCAGCTATCCTGAAGAAGCATTGGTGGAACACGGATAACGTAGATAACTTCACGAACCAAATAGGGTGCCCTACTCCAGCTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04212 ko05134 map04212 map05134

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

330

Amino Acids

37.18

Weight (kDa)

5.09

Isoelectric Point (pI)

46.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18880 AT5G45710 AT5G45710 AT5G45710 AT5G45710
fragaria_vesca	FvH4_3g07170 FvH4_3g07170 FvH4_6g27900
malus_domestica	MD00G1007800.v1.1 MD09G1233700.v1.1 MD10G1274400.v1.1 MD17G1230100.v1.1
prunus_persica	Prupe.3G108700_v2.0.a1 Prupe.3G108700_v2.0.a1 Prupe.4G068100_v2.0.a1 Prupe.4G068100_v2.0.a1 Prupe.4G068100_v2.0.a1 Prupe.4G068100_v2.0.a1 Prupe.4G068100_v2.0.a1
pyrus_communis	pycom05g27300 pycom09g15200 pycom10g22900 pycom17g23300
rosa_chinensis	RchiOBHm_Chr2g0131371 RchiOBHm_Chr5g0011961
rosa_laevigata	RLG00000019181 RLG00000031873
rosa_multiflora	Rmu_sc0001475.1_g000001 Rmu_ssc0000009.1_g000034
rosa_roxburghii	Rroxscaffold_1G00064630 Rroxscaffold_2G00113040
rosa_rugosa	Rorug02G0296200 Rorug04G0460200
rosa_samantha	Rh2AG349500 Rh2BG356400 Rh2CG335300 Rh2DG374300 Rh5AG091800 Rh5BG087700 Rh5CG101500 Rh5DG088300
rosa_wichuraiana	Rw2G028360 Rw5G008020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	969
AccI	GTMKAC	2 cut(s)	17, 70
AccII	CGCG	1 cut(s)	782
AciI	CCGC	4 cut(s)	112, 347, 620, 780
AclWI	GGATC	1 cut(s)	373
AcsI	RAATTY	5 cut(s)	140, 295, 337, 358, 586
AcuI	CTGAAG	1 cut(s)	935
AfaI	GTAC	3 cut(s)	150, 249, 858
AfiI	CCNNNNNNNGG	1 cut(s)	616
AgsI	TTSAA	6 cut(s)	140, 146, 337, 343, 375, 591
AhlI	ACTAGT	1 cut(s)	220
AjnI	CCWGG	1 cut(s)	832
AjuI	GAANNNNNNNTTGG	2 cut(s)	344, 376
AluBI	AGCT	6 cut(s)	90, 106, 400, 842, 908, 983
AluI	AGCT	6 cut(s)	90, 106, 400, 842, 908, 983
Alw26I	GTCTC	2 cut(s)	501, 821
AlwI	GGATC	1 cut(s)	373
AoxI	GGCC	3 cut(s)	204, 501, 551
ApeKI	GCWGC	1 cut(s)	256
ApoI	RAATTY	5 cut(s)	140, 295, 337, 358, 586
AspLEI	GCGC	2 cut(s)	784, 850
AspS9I	GGNCC	1 cut(s)	394
AsuC2I	CCSGG	1 cut(s)	234
AsuHPI	GGTGA	2 cut(s)	552, 573
AvaII	GGWCC	1 cut(s)	394
BaeGI	GKGCMC	3 cut(s)	671, 733, 974
BanI	GGYRCC	1 cut(s)	969
BauI	CACGAG	1 cut(s)	11
BbsI	GAAGAC	1 cut(s)	408
BbvI	GCAGC	1 cut(s)	268
BccI	CCATC	3 cut(s)	403, 869, 875
BceAI	ACGGC	1 cut(s)	219
BciT130I	CCWGG	1 cut(s)	834
BcnI	CCSGG	1 cut(s)	234
BcoDI	GTCTC	2 cut(s)	501, 821
BcuI	ACTAGT	1 cut(s)	220
BfaI	CTAG	1 cut(s)	221
BfmI	CTRYAG	2 cut(s)	107, 170
BglI	GCCNNNNNGGC	1 cut(s)	212
BisI	GCNGC	4 cut(s)	113, 257, 621, 780
BlsI	GCNGC	4 cut(s)	114, 258, 622, 781
BmcAI	AGTACT	1 cut(s)	858
Bme1390I	CCNGG	2 cut(s)	234, 834
Bme18I	GGWCC	1 cut(s)	394
BmgT120I	GGNCC	1 cut(s)	394
BmiI	GGNNCC	1 cut(s)	971
BmrFI	CCNGG	2 cut(s)	234, 834
BmsI	GCATC	3 cut(s)	124, 835, 886
BpiI	GAAGAC	1 cut(s)	408
BpmI	CTGGAG	1 cut(s)	963
BpuEI	CTTGAG	2 cut(s)	116, 422
BpuMI	CCSGG	1 cut(s)	234
Bsa29I	ATCGAT	1 cut(s)	705
BsaAI	YACGTR	1 cut(s)	32
BsaBI	GATNNNNATC	1 cut(s)	900
BsaI	GGTCTC	1 cut(s)	821
BsaJI	CCNNGG	3 cut(s)	445, 789, 832
Bsc4I	CCNNNNNNNGG	1 cut(s)	616
Bse1I	ACTGG	1 cut(s)	768
Bse3DI	GCAATG	1 cut(s)	468
Bse8I	GATNNNNATC	1 cut(s)	900
BseBI	CCWGG	1 cut(s)	834
BseCI	ATCGAT	1 cut(s)	705
BseDI	CCNNGG	3 cut(s)	445, 789, 832
BseGI	GGATG	3 cut(s)	645, 880, 901
BseJI	GATNNNNATC	1 cut(s)	900
BseLI	CCNNNNNNNGG	1 cut(s)	616
BseMI	GCAATG	1 cut(s)	468
BseMII	CTCAG	1 cut(s)	512
BseNI	ACTGG	1 cut(s)	768
BseSI	GKGCMC	3 cut(s)	671, 733, 974
BseXI	GCAGC	1 cut(s)	268
BseYI	CCCAGC	1 cut(s)	623
BsgI	GTGCAG	3 cut(s)	245, 275, 720
Bsh1236I	CGCG	1 cut(s)	782
BshFI	GGCC	3 cut(s)	206, 503, 553
BshNI	GGYRCC	1 cut(s)	969
BshVI	ATCGAT	1 cut(s)	705
BsiSI	CCGG	2 cut(s)	233, 851
BslI	CCNNNNNNNGG	1 cut(s)	616
BsmAI	GTCTC	2 cut(s)	501, 821
BsmI	GAATGC	1 cut(s)	601
BsnI	GGCC	3 cut(s)	206, 503, 553
Bso31I	GGTCTC	1 cut(s)	821
Bsp1286I	GDGCHC	3 cut(s)	671, 733, 974
Bsp143I	GATC	2 cut(s)	365, 566
Bsp19I	CCATGG	1 cut(s)	445
BspACI	CCGC	4 cut(s)	112, 347, 620, 780
BspANI	GGCC	3 cut(s)	206, 503, 553
BspCNI	CTCAG	1 cut(s)	511
BspDI	ATCGAT	1 cut(s)	705
BspFNI	CGCG	1 cut(s)	782
BspHI	TCATGA	1 cut(s)	79
BspLI	GGNNCC	1 cut(s)	971
BspMAI	CTGCAG	1 cut(s)	174
BspPI	GGATC	1 cut(s)	373
BspT107I	GGYRCC	1 cut(s)	969
BspTNI	GGTCTC	1 cut(s)	821
BsrDI	GCAATG	1 cut(s)	468
BsrI	ACTGG	1 cut(s)	768
BssECI	CCNNGG	3 cut(s)	445, 789, 832
BssMI	GATC	2 cut(s)	365, 566
BssNAI	GTATAC	1 cut(s)	18
BssSI	CACGAG	1 cut(s)	11
BssT1I	CCWWGG	2 cut(s)	445, 789
Bst1107I	GTATAC	1 cut(s)	18
Bst2BI	CACGAG	1 cut(s)	11
Bst2UI	CCWGG	1 cut(s)	834
Bst4CI	ACNGT	5 cut(s)	22, 676, 728, 816, 861
BstAPI	GCANNNNNTGC	1 cut(s)	555
BstBAI	YACGTR	1 cut(s)	32
BstC8I	GCNNGC	2 cut(s)	92, 551
BstDEI	CTNAG	2 cut(s)	498, 717
BstDSI	CCRYGG	1 cut(s)	445
BstF5I	GGATG	3 cut(s)	645, 880, 901
BstFNI	CGCG	1 cut(s)	782
BstHHI	GCGC	2 cut(s)	784, 850
BstKTI	GATC	2 cut(s)	368, 569
BstMAI	GTCTC	2 cut(s)	501, 821
BstMBI	GATC	2 cut(s)	365, 566
BstMWI	GCNNNNNNNGC	7 cut(s)	112, 212, 546, 555, 629, 896, 905
BstNI	CCWGG	1 cut(s)	834
BstSCI	CCNGG	2 cut(s)	232, 832
BstSFI	CTRYAG	2 cut(s)	107, 170
BstSLI	GKGCMC	3 cut(s)	671, 733, 974
BstUI	CGCG	1 cut(s)	782
BstV1I	GCAGC	1 cut(s)	268
BstV2I	GAAGAC	1 cut(s)	408
BstXI	CCANNNNNNTGG	2 cut(s)	452, 751
BstZ17I	GTATAC	1 cut(s)	18
Bsu15I	ATCGAT	1 cut(s)	705
BsuRI	GGCC	3 cut(s)	206, 503, 553
BsuTUI	ATCGAT	1 cut(s)	705
BtgI	CCRYGG	1 cut(s)	445
BtgZI	GCGATG	1 cut(s)	894
BtsCI	GGATG	3 cut(s)	645, 880, 901
BtsIMutI	CAGTG	3 cut(s)	672, 733, 821
Cac8I	GCNNGC	2 cut(s)	92, 551
CciI	TCATGA	1 cut(s)	79
CfoI	GCGC	2 cut(s)	784, 850
Cfr13I	GGNCC	1 cut(s)	394
ClaI	ATCGAT	1 cut(s)	705
Csp6I	GTAC	3 cut(s)	149, 248, 857
CviAII	CATG	4 cut(s)	80, 178, 446, 541
CviQI	GTAC	3 cut(s)	149, 248, 857
DdeI	CTNAG	2 cut(s)	498, 717
DpnI	GATC	2 cut(s)	367, 568
DpnII	GATC	2 cut(s)	365, 566
Eco130I	CCWWGG	2 cut(s)	445, 789
Eco147I	AGGCCT	2 cut(s)	503, 553
Eco31I	GGTCTC	1 cut(s)	821
Eco47I	GGWCC	1 cut(s)	394
Eco57I	CTGAAG	1 cut(s)	935
EcoRI	GAATTC	2 cut(s)	295, 586
EcoRII	CCWGG	1 cut(s)	832
EcoT14I	CCWWGG	2 cut(s)	445, 789
ErhI	CCWWGG	2 cut(s)	445, 789
FaeI	CATG	4 cut(s)	83, 181, 449, 544
FatI	CATG	4 cut(s)	79, 177, 445, 540
FblI	GTMKAC	2 cut(s)	17, 70
Fnu4HI	GCNGC	4 cut(s)	113, 257, 621, 780
FokI	GGATG	3 cut(s)	632, 887, 908
Fsp4HI	GCNGC	4 cut(s)	113, 257, 621, 780
FspBI	CTAG	1 cut(s)	221
GlaI	GCGC	2 cut(s)	783, 849
GluI	GCNGC	4 cut(s)	113, 257, 621, 780
GsaI	CCCAGC	1 cut(s)	627
GsuI	CTGGAG	1 cut(s)	963
HaeIII	GGCC	3 cut(s)	206, 503, 553
HapII	CCGG	2 cut(s)	233, 851
HhaI	GCGC	2 cut(s)	784, 850
Hin1II	CATG	4 cut(s)	83, 181, 449, 544
Hin6I	GCGC	2 cut(s)	782, 848
HinP1I	GCGC	2 cut(s)	782, 848
HindIII	AAGCTT	1 cut(s)	88
HinfI	GANTC	6 cut(s)	7, 127, 184, 343, 413, 702
HpaII	CCGG	2 cut(s)	233, 851
HphI	GGTGA	2 cut(s)	552, 573
Hpy166II	GTNNAC	2 cut(s)	18, 71
Hpy188I	TCNGA	2 cut(s)	265, 865
Hpy188III	TCNNGA	8 cut(s)	11, 80, 131, 311, 641, 699, 913, 955
Hpy8I	GTNNAC	2 cut(s)	18, 71
HpyAV	CCTTC	3 cut(s)	217, 323, 864
HpyCH4III	ACNGT	5 cut(s)	22, 676, 728, 816, 861
HpyCH4IV	ACGT	2 cut(s)	31, 942
HpyCH4V	TGCA	6 cut(s)	4, 172, 226, 256, 632, 737
HpyF10VI	GCNNNNNNNGC	7 cut(s)	112, 212, 546, 555, 629, 896, 905
HpyF3I	CTNAG	2 cut(s)	498, 717
HpySE526I	ACGT	2 cut(s)	31, 942
Hsp92II	CATG	4 cut(s)	83, 181, 449, 544
HspAI	GCGC	2 cut(s)	782, 848
Kzo9I	GATC	2 cut(s)	365, 566
LmnI	GCTCC	1 cut(s)	103
Lsp1109I	GCAGC	1 cut(s)	268
LweI	GCATC	3 cut(s)	124, 835, 886
MaeI	CTAG	1 cut(s)	221
MaeII	ACGT	2 cut(s)	31, 942
MaeIII	GTNAC	1 cut(s)	517
MalI	GATC	2 cut(s)	367, 568
MboI	GATC	2 cut(s)	365, 566
MhlI	GDGCHC	3 cut(s)	671, 733, 974
MluCI	AATT	6 cut(s)	140, 295, 337, 358, 369, 586
MlyI	GAGTC	1 cut(s)	422
MmeI	TCCRAC	2 cut(s)	81, 372
MnlI	CCTC	4 cut(s)	514, 573, 607, 885
MseI	TTAA	1 cut(s)	422
MslI	CAYNNNNRTG	2 cut(s)	539, 664
MspA1I	CMGCKG	1 cut(s)	112
MspI	CCGG	2 cut(s)	233, 851
MspR9I	CCNGG	2 cut(s)	234, 834
Mva1269I	GAATGC	1 cut(s)	601
MvaI	CCWGG	1 cut(s)	834
MvnI	CGCG	1 cut(s)	782
MwoI	GCNNNNNNNGC	7 cut(s)	112, 212, 546, 555, 629, 896, 905
NciI	CCSGG	1 cut(s)	234
NcoI	CCATGG	1 cut(s)	445
NdeII	GATC	2 cut(s)	365, 566
NlaIII	CATG	4 cut(s)	83, 181, 449, 544
NlaIV	GGNNCC	1 cut(s)	971
PagI	TCATGA	1 cut(s)	79
PceI	AGGCCT	2 cut(s)	503, 553
PctI	GAATGC	1 cut(s)	601
PfeI	GAWTC	5 cut(s)	7, 127, 184, 343, 702
PkrI	GCNGC	4 cut(s)	114, 258, 622, 781
PleI	GAGTC	1 cut(s)	421
PpsI	GAGTC	1 cut(s)	421
Ppu21I	YACGTR	1 cut(s)	32
Psp6I	CCWGG	1 cut(s)	832
PspFI	CCCAGC	1 cut(s)	623
PspGI	CCWGG	1 cut(s)	832
PspN4I	GGNNCC	1 cut(s)	971
PspPI	GGNCC	1 cut(s)	394
PstI	CTGCAG	1 cut(s)	174
RsaI	GTAC	3 cut(s)	150, 249, 858
RsaNI	GTAC	3 cut(s)	149, 248, 857
RseI	CAYNNNNRTG	2 cut(s)	539, 664
SaqAI	TTAA	1 cut(s)	422
SatI	GCNGC	4 cut(s)	113, 257, 621, 780
Sau3AI	GATC	2 cut(s)	365, 566
Sau96I	GGNCC	1 cut(s)	394
ScaI	AGTACT	1 cut(s)	858
SchI	GAGTC	1 cut(s)	422
ScrFI	CCNGG	2 cut(s)	234, 834
SduI	GDGCHC	3 cut(s)	671, 733, 974
SfaNI	GCATC	3 cut(s)	124, 835, 886
SfcI	CTRYAG	2 cut(s)	107, 170
SinI	GGWCC	1 cut(s)	394
SmiMI	CAYNNNNRTG	2 cut(s)	539, 664
SmlI	CTYRAG	2 cut(s)	95, 401
SmoI	CTYRAG	2 cut(s)	95, 401
SpeI	ACTAGT	1 cut(s)	220
Sse9I	AATT	6 cut(s)	140, 295, 337, 358, 369, 586
SseBI	AGGCCT	2 cut(s)	503, 553
SsiI	CCGC	4 cut(s)	112, 347, 620, 780
SspI	AATATT	1 cut(s)	637
SspMI	CTAG	1 cut(s)	221
StuI	AGGCCT	2 cut(s)	503, 553
StyD4I	CCNGG	2 cut(s)	232, 832
StyI	CCWWGG	2 cut(s)	445, 789
TaaI	ACNGT	5 cut(s)	22, 676, 728, 816, 861
TaiI	ACGT	2 cut(s)	34, 945
TaqI	TCGA	2 cut(s)	565, 705
TasI	AATT	6 cut(s)	140, 295, 337, 358, 369, 586
TatI	WGTACW	3 cut(s)	148, 247, 856
TauI	GCSGC	3 cut(s)	115, 623, 782
TfiI	GAWTC	5 cut(s)	7, 127, 184, 343, 702
Tru1I	TTAA	1 cut(s)	422
Tru9I	TTAA	1 cut(s)	422
TscAI	CASTG	3 cut(s)	679, 733, 821
TseI	GCWGC	1 cut(s)	256
TspDTI	ATGAA	4 cut(s)	557, 594, 608, 725
TspGWI	ACGGA	1 cut(s)	950
TspRI	CASTG	3 cut(s)	679, 733, 821
VpaK11BI	GGWCC	1 cut(s)	394
XapI	RAATTY	5 cut(s)	140, 295, 337, 358, 586
XcmI	CCANNNNNNNNNTGG	1 cut(s)	388
XmiI	GTMKAC	2 cut(s)	17, 70
XspI	CTAG	1 cut(s)	221
ZrmI	AGTACT	1 cut(s)	858

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.