Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0002221

Physical Location & Seq

Genomic Coordinates Forward (+)

28313971 .. 28315381

Gene Structure 1411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g27300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGGAGGAAGCTCAAGGCGGCACGAGTTCGTTGCCTCCTTTCCTTTCCAAGACATATGAGATGGTAGATGATGCTTCAACAGATTCAATTGTGTCATGGAGTGCCAGTGATAAGAGCTTCATTGTTCGGAACCCGCCGGATTTTGCTAGAGATTTGCTGCCAAAGTTCTTCAAGCACAACAACTTCTCTAGCTTCATCAGGCAGCTCAATACCTACGGTTTTAGAAAAATTGATCCGGAGCAATGGGAATTCGCCAATGATGATTTTATAAGAGGTCAGCCACACCTTATGAAGAACATCCATAGGCGAAAGCCGGTGCACAGTCACTCTTTGCAGAATCTTCAAGTCCAAGGCCAAGGGCAAGGGACTTCATTGTCCGAAGCTGAACGGCAGAGTATGAAGGATGAAATCAAGAGCCTTAAACATGAGAAAGAACGCCTTGCTGTGGAGTTACAGAGGCATGAACAGGAGCGGCATGGATTGGAGTTGCAAATGCAGTTCTTGAAGGACCGTTTGCAACACATGGAAGGGCAGCAGCAAACCATGGCGGCTTTCGTGGCTAGGGTTTTGCAGAAACCGGGGATTGCCTCTAATCCTGTTCCACAATTGGAAGTCCGTGAGCGAAAGAGAAGGTTGCCAAGAACCAGTTGGCCTTTCGACGATGCTAACAATGGAAATAATCAGATGGTTAGTTCAGAAGCTGTAATTAGAGAAAACGGGGGTTTGGAAAAGTTGGAGCAGTTGGAGTCATTCCTAGCATTTTGGGAAGATACCATTCATGATGTTGGTCACAATAACATTCCACTTGTGGATGAATCTACAAGTGGTAATGAAATTGAAAGCACAGCCGTATCTTCCATGCAATTGAATGTTGACATTCAGTCCAAATCCCCTCAAATTGACATGAATTCTGAGCCCGCTGCATTTGTTGCTCCTGAGCCTGCTGCATCGCAATCCTCTATGGAACAAACAGCTGGAATTGCTGCTTCTGCACCCACCACTGCCTTGATACAACAACCGTCTAATGAAAAACCAGCTGGAACCACCTCTTCTGCACCCACCGGGGTCAATGACGGATTTTGGGAACAGTTCTTGACAGAGAATCCTGGCACGTCAGAAGCACAGAAAGTTCCGTTGGAAAGAAAGGATTCCGATGGTAGAAGTAATGACAGCAAACCTGGTGATCATGGCAGGTTGTGGTGCAATATAAGGAATGTAAATAACCTTACAGAACAGATGGGGCATCTTACTCCATTAGAGAAAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0042493 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046983 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

423

Amino Acids

47.32

Weight (kDa)

5.39

Isoelectric Point (pI)

49.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSF_DNA-bind	PF00447	14 - 103	1e-29	HSF-type DNA-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18880 AT5G45710 AT5G45710 AT5G45710 AT5G45710
fragaria_vesca	FvH4_3g07170 FvH4_3g07170 FvH4_6g27900
malus_domestica	MD00G1007800.v1.1 MD09G1233700.v1.1 MD10G1274400.v1.1 MD17G1230100.v1.1
prunus_persica	Prupe.3G108700_v2.0.a1 Prupe.3G108700_v2.0.a1 Prupe.4G068100_v2.0.a1 Prupe.4G068100_v2.0.a1 Prupe.4G068100_v2.0.a1 Prupe.4G068100_v2.0.a1 Prupe.4G068100_v2.0.a1
pyrus_communis	pycom05g27300 pycom09g15200 pycom10g22900 pycom17g23300
rosa_chinensis	RchiOBHm_Chr2g0131371 RchiOBHm_Chr5g0011961
rosa_laevigata	RLG00000019181 RLG00000031873
rosa_multiflora	Rmu_sc0001475.1_g000001 Rmu_ssc0000009.1_g000034
rosa_roxburghii	Rroxscaffold_1G00064630 Rroxscaffold_2G00113040
rosa_rugosa	Rorug02G0296200 Rorug04G0460200
rosa_samantha	Rh2AG349500 Rh2BG356400 Rh2CG335300 Rh2DG374300 Rh5AG091800 Rh5BG087700 Rh5CG101500 Rh5DG088300
rosa_wichuraiana	Rw2G028360 Rw5G008020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	269
AasI	GACNNNNNNGTC	1 cut(s)	373
Acc36I	ACCTGC	1 cut(s)	1182
AccBSI	CCGCTC	1 cut(s)	472
AccIII	TCCGGA	1 cut(s)	235
AciI	CCGC	5 cut(s)	18, 134, 472, 548, 918
AclWI	GGATC	1 cut(s)	227
AcsI	RAATTY	2 cut(s)	248, 907
AfiI	CCNNNNNNNGG	1 cut(s)	445
AgsI	TTSAA	7 cut(s)	78, 87, 172, 344, 505, 839, 868
AhdI	GACNNNNNGTC	1 cut(s)	880
AjiI	CACGTC	1 cut(s)	1113
AjnI	CCWGG	2 cut(s)	1105, 1177
AjuI	GAANNNNNNNTTGG	2 cut(s)	1118, 1150
AluBI	AGCT	8 cut(s)	11, 117, 192, 205, 383, 701, 974, 1037
AluI	AGCT	8 cut(s)	11, 117, 192, 205, 383, 701, 974, 1037
Alw21I	GWGCWC	1 cut(s)	321
Alw44I	GTGCAC	1 cut(s)	317
AlwI	GGATC	1 cut(s)	227
AlwNI	CAGNNNCTG	1 cut(s)	701
Aor13HI	TCCGGA	1 cut(s)	235
AoxI	GGCC	2 cut(s)	352, 650
ApaLI	GTGCAC	1 cut(s)	317
ApeKI	GCWGC	7 cut(s)	157, 202, 532, 535, 920, 944, 983
ApoI	RAATTY	2 cut(s)	248, 907
Asp700I	GAANNNNTTC	1 cut(s)	1147
AspS9I	GGNCC	1 cut(s)	508
AsuC2I	CCSGG	2 cut(s)	579, 1063
AsuHPI	GGTGA	1 cut(s)	1193
AvaII	GGWCC	1 cut(s)	508
BaeGI	GKGCMC	1 cut(s)	321
BaeI	ACNNNNGTAYC	2 cut(s)	834, 867
BanII	GRGCYC	1 cut(s)	918
BauI	CACGAG	1 cut(s)	22
Bbv12I	GWGCWC	1 cut(s)	321
BbvI	GCAGC	7 cut(s)	144, 214, 544, 547, 907, 931, 970
BccI	CCATC	4 cut(s)	55, 679, 1148, 1231
BceAI	ACGGC	2 cut(s)	404, 833
BcgI	CGANNNNNNTGC	2 cut(s)	13, 47
BciT130I	CCWGG	2 cut(s)	1107, 1179
BclI	TGATCA	1 cut(s)	1183
BcnI	CCSGG	2 cut(s)	579, 1063
BfaI	CTAG	4 cut(s)	147, 189, 561, 755
BfuAI	ACCTGC	1 cut(s)	1182
Bme1390I	CCNGG	4 cut(s)	579, 1063, 1107, 1179
Bme18I	GGWCC	1 cut(s)	508
BmeRI	GACNNNNNGTC	1 cut(s)	880
BmgBI	CACGTC	1 cut(s)	1113
BmgT120I	GGNCC	1 cut(s)	508
BmiI	GGNNCC	2 cut(s)	131, 1042
BmrFI	CCNGG	4 cut(s)	579, 1063, 1107, 1179
BmsI	GCATC	4 cut(s)	61, 652, 956, 1252
Bpu10I	CCTNAGC	1 cut(s)	936
BpuMI	CCSGG	2 cut(s)	579, 1063
BsaJI	CCNNGG	5 cut(s)	349, 355, 543, 578, 1062
BsaWI	WCCGGW	1 cut(s)	235
BsaXI	ACNNNNNCTCC	2 cut(s)	91, 121
Bsc4I	CCNNNNNNNGG	1 cut(s)	445
Bse118I	RCCGGY	1 cut(s)	313
Bse1I	ACTGG	2 cut(s)	105, 645
Bse3DI	GCAATG	1 cut(s)	248
BseAI	TCCGGA	1 cut(s)	235
BseBI	CCWGG	2 cut(s)	1107, 1179
BseDI	CCNNGG	5 cut(s)	349, 355, 543, 578, 1062
BseGI	GGATG	3 cut(s)	297, 409, 817
BseLI	CCNNNNNNNGG	1 cut(s)	445
BseMI	GCAATG	1 cut(s)	248
BseMII	CTCAG	2 cut(s)	903, 927
BseNI	ACTGG	2 cut(s)	105, 645
BseSI	GKGCMC	1 cut(s)	321
BseXI	GCAGC	7 cut(s)	144, 214, 544, 547, 907, 931, 970
BsgI	GTGCAG	2 cut(s)	975, 1038
BshFI	GGCC	2 cut(s)	354, 652
BsiHKAI	GWGCWC	1 cut(s)	321
BsiSI	CCGG	5 cut(s)	137, 236, 314, 578, 1062
BslFI	GGGAC	1 cut(s)	379
BslI	CCNNNNNNNGG	1 cut(s)	445
BsmFI	GGGAC	1 cut(s)	379
BsnI	GGCC	2 cut(s)	354, 652
Bsp1286I	GDGCHC	2 cut(s)	321, 918
Bsp13I	TCCGGA	1 cut(s)	235
Bsp143I	GATC	2 cut(s)	232, 1183
Bsp19I	CCATGG	1 cut(s)	543
BspACI	CCGC	5 cut(s)	18, 134, 472, 548, 918
BspANI	GGCC	2 cut(s)	354, 652
BspCNI	CTCAG	2 cut(s)	904, 928
BspEI	TCCGGA	1 cut(s)	235
BspHI	TCATGA	1 cut(s)	778
BspLI	GGNNCC	2 cut(s)	131, 1042
BspMI	ACCTGC	1 cut(s)	1182
BspPI	GGATC	1 cut(s)	227
BsrBI	CCGCTC	1 cut(s)	472
BsrDI	GCAATG	1 cut(s)	248
BsrFI	RCCGGY	1 cut(s)	313
BsrI	ACTGG	2 cut(s)	105, 645
BssAI	RCCGGY	1 cut(s)	313
BssECI	CCNNGG	5 cut(s)	349, 355, 543, 578, 1062
BssMI	GATC	2 cut(s)	232, 1183
BssSI	CACGAG	1 cut(s)	22
BssT1I	CCWWGG	3 cut(s)	349, 355, 543
Bst2BI	CACGAG	1 cut(s)	22
Bst2UI	CCWGG	2 cut(s)	1107, 1179
Bst4CI	ACNGT	5 cut(s)	218, 323, 512, 1020, 1089
Bst6I	CTCTTC	1 cut(s)	1054
BstAPI	GCANNNNNTGC	1 cut(s)	929
BstC8I	GCNNGC	2 cut(s)	918, 942
BstDEI	CTNAG	2 cut(s)	912, 936
BstDSI	CCRYGG	1 cut(s)	543
BstF5I	GGATG	3 cut(s)	297, 409, 817
BstKTI	GATC	2 cut(s)	235, 1186
BstMBI	GATC	2 cut(s)	232, 1183
BstMWI	GCNNNNNNNGC	4 cut(s)	557, 929, 980, 989
BstNI	CCWGG	2 cut(s)	1107, 1179
BstSCI	CCNGG	4 cut(s)	577, 1061, 1105, 1177
BstSLI	GKGCMC	1 cut(s)	321
BstV1I	GCAGC	7 cut(s)	144, 214, 544, 547, 907, 931, 970
BsuRI	GGCC	2 cut(s)	354, 652
BtgI	CCRYGG	1 cut(s)	543
BtgZI	GCGATG	1 cut(s)	933
BtrI	CACGTC	1 cut(s)	1113
BtsCI	GGATG	3 cut(s)	297, 409, 817
BtsI	GCAGTG	1 cut(s)	999
BtsIMutI	CAGTG	2 cut(s)	112, 999
BveI	ACCTGC	1 cut(s)	1182
Cac8I	GCNNGC	2 cut(s)	918, 942
CaiI	CAGNNNCTG	1 cut(s)	701
CciI	TCATGA	1 cut(s)	778
Cfr10I	RCCGGY	1 cut(s)	313
Cfr13I	GGNCC	1 cut(s)	508
CsiI	ACCWGGT	1 cut(s)	1177
DdeI	CTNAG	2 cut(s)	912, 936
DpnI	GATC	2 cut(s)	234, 1185
DpnII	GATC	2 cut(s)	232, 1183
DrdI	GACNNNNNNGTC	1 cut(s)	373
DriI	GACNNNNNGTC	1 cut(s)	880
DseDI	GACNNNNNNGTC	1 cut(s)	373
Eam1104I	CTCTTC	1 cut(s)	1054
Eam1105I	GACNNNNNGTC	1 cut(s)	880
EarI	CTCTTC	1 cut(s)	1054
Eco130I	CCWWGG	3 cut(s)	349, 355, 543
Eco24I	GRGCYC	1 cut(s)	918
Eco47I	GGWCC	1 cut(s)	508
EcoRI	GAATTC	2 cut(s)	248, 907
EcoRII	CCWGG	2 cut(s)	1105, 1177
EcoT14I	CCWWGG	3 cut(s)	349, 355, 543
EcoT38I	GRGCYC	1 cut(s)	918
ErhI	CCWWGG	3 cut(s)	349, 355, 543
FalI	AAGNNNNNCTT	2 cut(s)	423, 455
FaqI	GGGAC	1 cut(s)	379
FauI	CCCGC	2 cut(s)	141, 925
FauNDI	CATATG	1 cut(s)	55
FbaI	TGATCA	1 cut(s)	1183
FokI	GGATG	3 cut(s)	284, 416, 824
FriOI	GRGCYC	1 cut(s)	918
FspBI	CTAG	4 cut(s)	147, 189, 561, 755
HaeIII	GGCC	2 cut(s)	354, 652
HapII	CCGG	5 cut(s)	137, 236, 314, 578, 1062
HincII	GTYRAC	1 cut(s)	874
HindII	GTYRAC	1 cut(s)	874
HinfI	GANTC	6 cut(s)	83, 337, 746, 815, 1102, 1148
HpaII	CCGG	5 cut(s)	137, 236, 314, 578, 1062
HphI	GGTGA	1 cut(s)	1193
Hpy166II	GTNNAC	2 cut(s)	319, 874
Hpy188I	TCNGA	7 cut(s)	129, 379, 684, 697, 913, 1117, 1153
Hpy188III	TCNNGA	6 cut(s)	236, 412, 502, 779, 935, 1093
Hpy8I	GTNNAC	2 cut(s)	319, 874
Hpy99I	CGWCG	1 cut(s)	662
HpyAV	CCTTC	4 cut(s)	394, 499, 521, 624
HpyCH4III	ACNGT	5 cut(s)	218, 323, 512, 1020, 1089
HpyCH4IV	ACGT	1 cut(s)	1112
HpyF10VI	GCNNNNNNNGC	4 cut(s)	557, 929, 980, 989
HpyF3I	CTNAG	2 cut(s)	912, 936
HpySE526I	ACGT	1 cut(s)	1112
Kpn2I	TCCGGA	1 cut(s)	235
Ksp22I	TGATCA	1 cut(s)	1183
Kzo9I	GATC	2 cut(s)	232, 1183
LmnI	GCTCC	4 cut(s)	238, 469, 736, 937
Lsp1109I	GCAGC	7 cut(s)	144, 214, 544, 547, 907, 931, 970
LweI	GCATC	4 cut(s)	61, 652, 956, 1252
MabI	ACCWGGT	1 cut(s)	1177
MaeI	CTAG	4 cut(s)	147, 189, 561, 755
MaeII	ACGT	1 cut(s)	1112
MaeIII	GTNAC	3 cut(s)	323, 450, 788
MalI	GATC	2 cut(s)	234, 1185
MbiI	CCGCTC	1 cut(s)	472
MboI	GATC	2 cut(s)	232, 1183
MboII	GAAGA	6 cut(s)	160, 304, 332, 779, 846, 1041
MfeI	CAATTG	3 cut(s)	87, 605, 863
MhlI	GDGCHC	2 cut(s)	321, 918
MlyI	GAGTC	1 cut(s)	755
MmeI	TCCRAC	3 cut(s)	714, 723, 1116
MnlI	CCTC	7 cut(s)	45, 266, 450, 598, 903, 967, 1057
MroI	TCCGGA	1 cut(s)	235
MroXI	GAANNNNTTC	1 cut(s)	1147
MseI	TTAA	1 cut(s)	420
MspA1I	CMGCKG	3 cut(s)	920, 974, 1037
MspI	CCGG	5 cut(s)	137, 236, 314, 578, 1062
MspR9I	CCNGG	4 cut(s)	579, 1063, 1107, 1179
MunI	CAATTG	3 cut(s)	87, 605, 863
MvaI	CCWGG	2 cut(s)	1107, 1179
MwoI	GCNNNNNNNGC	4 cut(s)	557, 929, 980, 989
NciI	CCSGG	2 cut(s)	579, 1063
NcoI	CCATGG	1 cut(s)	543
NdeI	CATATG	1 cut(s)	55
NdeII	GATC	2 cut(s)	232, 1183
NlaIV	GGNNCC	2 cut(s)	131, 1042
NmuCI	GTSAC	2 cut(s)	323, 788
PagI	TCATGA	1 cut(s)	778
PdmI	GAANNNNTTC	1 cut(s)	1147
PfeI	GAWTC	5 cut(s)	83, 337, 815, 1102, 1148
PleI	GAGTC	1 cut(s)	754
PpsI	GAGTC	1 cut(s)	754
PsiI	TTATAA	1 cut(s)	269
Psp6I	CCWGG	2 cut(s)	1105, 1177
PspGI	CCWGG	2 cut(s)	1105, 1177
PspN4I	GGNNCC	2 cut(s)	131, 1042
PspPI	GGNCC	1 cut(s)	508
PstNI	CAGNNNCTG	1 cut(s)	701
PvuII	CAGCTG	2 cut(s)	974, 1037
SaqAI	TTAA	1 cut(s)	420
Sau3AI	GATC	2 cut(s)	232, 1183
Sau96I	GGNCC	1 cut(s)	508
SchI	GAGTC	1 cut(s)	755
ScrFI	CCNGG	4 cut(s)	579, 1063, 1107, 1179
SduI	GDGCHC	2 cut(s)	321, 918
SexAI	ACCWGGT	1 cut(s)	1177
SfaNI	GCATC	4 cut(s)	61, 652, 956, 1252
SinI	GGWCC	1 cut(s)	508
SmlI	CTYRAG	1 cut(s)	12
SmoI	CTYRAG	1 cut(s)	12
SsiI	CCGC	5 cut(s)	18, 134, 472, 548, 918
SspMI	CTAG	4 cut(s)	147, 189, 561, 755
StyD4I	CCNGG	4 cut(s)	577, 1061, 1105, 1177
StyI	CCWWGG	3 cut(s)	349, 355, 543
TaaI	ACNGT	5 cut(s)	218, 323, 512, 1020, 1089
TaiI	ACGT	1 cut(s)	1115
TaqI	TCGA	1 cut(s)	657
TauI	GCSGC	3 cut(s)	21, 475, 551
TfiI	GAWTC	5 cut(s)	83, 337, 815, 1102, 1148
Tru1I	TTAA	1 cut(s)	420
Tru9I	TTAA	1 cut(s)	420
TscAI	CASTG	2 cut(s)	112, 1006
TseFI	GTSAC	2 cut(s)	323, 788
TseI	GCWGC	7 cut(s)	157, 202, 532, 535, 920, 944, 983
Tsp45I	GTSAC	2 cut(s)	323, 788
TspGWI	ACGGA	3 cut(s)	605, 1089, 1122
TspRI	CASTG	2 cut(s)	112, 1006
VneI	GTGCAC	1 cut(s)	317
VpaK11BI	GGWCC	1 cut(s)	508
XapI	RAATTY	2 cut(s)	248, 907
XcmI	CCANNNNNNNNNTGG	1 cut(s)	645
XmnI	GAANNNNTTC	1 cut(s)	1147
XspI	CTAG	4 cut(s)	147, 189, 561, 755

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.