Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0002221

Physical Location & Seq

Genomic Coordinates Forward (+)

1050150 .. 1052710

Gene Structure 2561 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1007800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGGAGGAAGCTCAAGGCGGCACGAGTTCGTTGCCTCCTTTCCTTTGCAAGACATATGAGATGGTAGATGATGCTTCAATAGATTCAATTGTGTCATGGAGTGCCAGTAATAAGAGCTTCATTGTTTGGAACCCGCCGGAGTTTGCTAGAGATTTGCTGCCAAAGTTCTTCAAGCACAACAATTTCTCTAGCTTCATCAGGCAGCTCAATACCTACGGTTTTAGAAAAATTGATCCGGAGCAATGGGAATTCGCCAATGACGATTTTATAAGAGGTCAGCCACACCTTATGAAGAACATCCATAGGCGAAAGCCGGTGCACAGCCACTCTTTGCAGAATCTTCAAGTCCAAGGCCAAGGGCAAGGGACTTCATTGTCCGAAGCTGAACGGCAGAGTATGAAGGATGAAATCAAGAGGCTTAAACATGAGAAAGAACGCCTTGCTGTGGAGTTACAGAGGCATGAACAGGAGCGGCATGGATTGGAGTTGCAAATGCAGTTCTTGAAGGACCGTTTGCAACACATGGAAGGGCAGCAGCAAACCATGGCGGCTTTTGTGGCTAGGGTTTTGCAGAAACCGGAGATTGCCTCTAATCCTGTTCCGCAATTGGAAGTCCGTGAGCGAAAGAGAAGGTTGCCAAGAACCAGTTGGCCTTTCGATGATGCTAACAATGGAAATAATCAGATGGTTAGTTCAGAAGCTGTTATTAGAGAAAACGGGGGTTTGGAAAAGTTGGAGCAGTTGGAGTCATTCCTAACATTTTGGGAAGATACCATTCATGATGTTGGTCACAATAACATTCCACTTGTGGATGAATCTACAAGTGGTAACGAAAGCACAGCCGTATCGTCCATACAATTGAATGTTGACATTCAGTCCAAATCCCCTAAAATTGACATGAATTCTGAGCCCGCTGCATTCGTTGCTCCCGAGCCTGCTGCATCGCAATCCTCTATAGAAAAAACAGCTGGAATTGCTGCTTCTGCACCCACCACCACCTTGATACAACAACCGTCTAACGAAAAACCAGCTGGAACCAGCACTTCTGCACCCACCGGGGTCAATGACGGATTTTGGGAACAGTTCTTGACAGAGAATCCTGGCACGTCAGAAGCACAGAAAGTTCCGTTGGAAGGAAAGGATTCCGATGGTAGAAGTAATGACAGCAAACCTGGTGATCATGGCAGGTTGTGGTGCAATATGAGGAATGTAAATAACCTTACAGAACAGATGGGGCATCTCACTCCAGTAGAGAAAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0042493 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046983 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

421

Amino Acids

47.22

Weight (kDa)

5.54

Isoelectric Point (pI)

50.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSF_DNA-bind	PF00447	14 - 103	6.5e-30	HSF-type DNA-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18880 AT5G45710 AT5G45710 AT5G45710 AT5G45710
fragaria_vesca	FvH4_3g07170 FvH4_3g07170 FvH4_6g27900
malus_domestica	MD00G1007800.v1.1 MD09G1233700.v1.1 MD10G1274400.v1.1 MD17G1230100.v1.1
prunus_persica	Prupe.3G108700_v2.0.a1 Prupe.3G108700_v2.0.a1 Prupe.4G068100_v2.0.a1 Prupe.4G068100_v2.0.a1 Prupe.4G068100_v2.0.a1 Prupe.4G068100_v2.0.a1 Prupe.4G068100_v2.0.a1
pyrus_communis	pycom05g27300 pycom09g15200 pycom10g22900 pycom17g23300
rosa_chinensis	RchiOBHm_Chr2g0131371 RchiOBHm_Chr5g0011961
rosa_laevigata	RLG00000019181 RLG00000031873
rosa_multiflora	Rmu_sc0001475.1_g000001 Rmu_ssc0000009.1_g000034
rosa_roxburghii	Rroxscaffold_1G00064630 Rroxscaffold_2G00113040
rosa_rugosa	Rorug02G0296200 Rorug04G0460200
rosa_samantha	Rh2AG349500 Rh2BG356400 Rh2CG335300 Rh2DG374300 Rh5AG091800 Rh5BG087700 Rh5CG101500 Rh5DG088300
rosa_wichuraiana	Rw2G028360 Rw5G008020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	269
AasI	GACNNNNNNGTC	1 cut(s)	373
Acc36I	ACCTGC	1 cut(s)	1176
AccBSI	CCGCTC	1 cut(s)	472
AccIII	TCCGGA	1 cut(s)	235
AciI	CCGC	6 cut(s)	18, 134, 472, 548, 602, 912
AclWI	GGATC	1 cut(s)	227
AcsI	RAATTY	2 cut(s)	248, 901
AfiI	CCNNNNNNNGG	2 cut(s)	445, 1133
AgsI	TTSAA	6 cut(s)	78, 87, 172, 344, 505, 862
AhdI	GACNNNNNGTC	1 cut(s)	874
AjiI	CACGTC	1 cut(s)	1107
AjnI	CCWGG	2 cut(s)	1099, 1171
AjuI	GAANNNNNNNTTGG	2 cut(s)	1112, 1144
AluBI	AGCT	8 cut(s)	11, 117, 192, 205, 383, 701, 968, 1031
AluI	AGCT	8 cut(s)	11, 117, 192, 205, 383, 701, 968, 1031
Alw21I	GWGCWC	1 cut(s)	321
Alw44I	GTGCAC	1 cut(s)	317
AlwI	GGATC	1 cut(s)	227
AlwNI	CAGNNNCTG	1 cut(s)	701
Ama87I	CYCGRG	1 cut(s)	929
Aor13HI	TCCGGA	1 cut(s)	235
AoxI	GGCC	2 cut(s)	352, 650
ApaLI	GTGCAC	1 cut(s)	317
ApeKI	GCWGC	7 cut(s)	157, 202, 532, 535, 914, 938, 977
ApoI	RAATTY	2 cut(s)	248, 901
Asp700I	GAANNNNTTC	1 cut(s)	1141
AspS9I	GGNCC	1 cut(s)	508
AsuC2I	CCSGG	1 cut(s)	1057
AsuHPI	GGTGA	1 cut(s)	1187
AvaI	CYCGRG	1 cut(s)	929
AvaII	GGWCC	1 cut(s)	508
BaeGI	GKGCMC	1 cut(s)	321
BaeI	ACNNNNGTAYC	2 cut(s)	828, 861
BanII	GRGCYC	1 cut(s)	912
BauI	CACGAG	1 cut(s)	22
Bbv12I	GWGCWC	1 cut(s)	321
BbvI	GCAGC	7 cut(s)	144, 214, 544, 547, 901, 925, 964
BccI	CCATC	4 cut(s)	55, 679, 1142, 1225
BceAI	ACGGC	2 cut(s)	404, 827
BcgI	CGANNNNNNTGC	4 cut(s)	13, 47, 920, 954
BciT130I	CCWGG	2 cut(s)	1101, 1173
BclI	TGATCA	1 cut(s)	1177
BcnI	CCSGG	1 cut(s)	1057
BfaI	CTAG	3 cut(s)	147, 189, 561
BfmI	CTRYAG	1 cut(s)	954
BfuAI	ACCTGC	1 cut(s)	1176
Bme1390I	CCNGG	3 cut(s)	1057, 1101, 1173
Bme18I	GGWCC	1 cut(s)	508
BmeRI	GACNNNNNGTC	1 cut(s)	874
BmeT110I	CYCGRG	1 cut(s)	929
BmgBI	CACGTC	1 cut(s)	1107
BmgT120I	GGNCC	1 cut(s)	508
BmiI	GGNNCC	2 cut(s)	131, 1036
BmrFI	CCNGG	3 cut(s)	1057, 1101, 1173
BmsI	GCATC	4 cut(s)	61, 652, 950, 1246
BplI	GAGNNNNNCTC	2 cut(s)	572, 604
BpmI	CTGGAG	1 cut(s)	1230
BpuMI	CCSGG	1 cut(s)	1057
BsaJI	CCNNGG	4 cut(s)	349, 355, 543, 1056
BsaWI	WCCGGW	2 cut(s)	235, 577
BsaXI	ACNNNNNCTCC	2 cut(s)	91, 121
Bsc4I	CCNNNNNNNGG	2 cut(s)	445, 1133
Bse118I	RCCGGY	1 cut(s)	313
Bse1I	ACTGG	3 cut(s)	105, 645, 1247
Bse3DI	GCAATG	1 cut(s)	248
BseAI	TCCGGA	1 cut(s)	235
BseBI	CCWGG	2 cut(s)	1101, 1173
BseDI	CCNNGG	4 cut(s)	349, 355, 543, 1056
BseGI	GGATG	3 cut(s)	297, 409, 817
BseLI	CCNNNNNNNGG	2 cut(s)	445, 1133
BseMI	GCAATG	1 cut(s)	248
BseMII	CTCAG	1 cut(s)	897
BseNI	ACTGG	3 cut(s)	105, 645, 1247
BseSI	GKGCMC	1 cut(s)	321
BseXI	GCAGC	7 cut(s)	144, 214, 544, 547, 901, 925, 964
BsgI	GTGCAG	2 cut(s)	969, 1032
BshFI	GGCC	2 cut(s)	354, 652
BsiHKAI	GWGCWC	1 cut(s)	321
BsiHKCI	CYCGRG	1 cut(s)	929
BsiSI	CCGG	5 cut(s)	137, 236, 314, 578, 1056
BslFI	GGGAC	1 cut(s)	379
BslI	CCNNNNNNNGG	2 cut(s)	445, 1133
BsmFI	GGGAC	1 cut(s)	379
BsmI	GAATGC	1 cut(s)	917
BsnI	GGCC	2 cut(s)	354, 652
BsoBI	CYCGRG	1 cut(s)	929
Bsp1286I	GDGCHC	2 cut(s)	321, 912
Bsp13I	TCCGGA	1 cut(s)	235
Bsp143I	GATC	2 cut(s)	232, 1177
Bsp19I	CCATGG	1 cut(s)	543
BspACI	CCGC	6 cut(s)	18, 134, 472, 548, 602, 912
BspANI	GGCC	2 cut(s)	354, 652
BspCNI	CTCAG	1 cut(s)	898
BspEI	TCCGGA	1 cut(s)	235
BspHI	TCATGA	1 cut(s)	778
BspLI	GGNNCC	2 cut(s)	131, 1036
BspMI	ACCTGC	1 cut(s)	1176
BspPI	GGATC	1 cut(s)	227
BsrBI	CCGCTC	1 cut(s)	472
BsrDI	GCAATG	1 cut(s)	248
BsrFI	RCCGGY	1 cut(s)	313
BsrI	ACTGG	3 cut(s)	105, 645, 1247
BssAI	RCCGGY	1 cut(s)	313
BssECI	CCNNGG	4 cut(s)	349, 355, 543, 1056
BssMI	GATC	2 cut(s)	232, 1177
BssSI	CACGAG	1 cut(s)	22
BssT1I	CCWWGG	3 cut(s)	349, 355, 543
Bst2BI	CACGAG	1 cut(s)	22
Bst2UI	CCWGG	2 cut(s)	1101, 1173
Bst4CI	ACNGT	4 cut(s)	218, 512, 1014, 1083
BstAPI	GCANNNNNTGC	1 cut(s)	923
BstC8I	GCNNGC	2 cut(s)	912, 936
BstDEI	CTNAG	1 cut(s)	906
BstDSI	CCRYGG	1 cut(s)	543
BstF5I	GGATG	3 cut(s)	297, 409, 817
BstKTI	GATC	2 cut(s)	235, 1180
BstMBI	GATC	2 cut(s)	232, 1177
BstMWI	GCNNNNNNNGC	4 cut(s)	557, 923, 974, 983
BstNI	CCWGG	2 cut(s)	1101, 1173
BstSCI	CCNGG	3 cut(s)	1055, 1099, 1171
BstSFI	CTRYAG	1 cut(s)	954
BstSLI	GKGCMC	1 cut(s)	321
BstV1I	GCAGC	7 cut(s)	144, 214, 544, 547, 901, 925, 964
BsuRI	GGCC	2 cut(s)	354, 652
BtgI	CCRYGG	1 cut(s)	543
BtgZI	GCGATG	1 cut(s)	927
BtrI	CACGTC	1 cut(s)	1107
BtsCI	GGATG	3 cut(s)	297, 409, 817
BveI	ACCTGC	1 cut(s)	1176
Cac8I	GCNNGC	2 cut(s)	912, 936
CaiI	CAGNNNCTG	1 cut(s)	701
CciI	TCATGA	1 cut(s)	778
Cfr10I	RCCGGY	1 cut(s)	313
Cfr13I	GGNCC	1 cut(s)	508
CsiI	ACCWGGT	1 cut(s)	1171
CviAII	CATG	9 cut(s)	96, 425, 461, 476, 523, 544, 779, 898, 1181
DdeI	CTNAG	1 cut(s)	906
DpnI	GATC	2 cut(s)	234, 1179
DpnII	GATC	2 cut(s)	232, 1177
DrdI	GACNNNNNNGTC	1 cut(s)	373
DriI	GACNNNNNGTC	1 cut(s)	874
DseDI	GACNNNNNNGTC	1 cut(s)	373
Eam1105I	GACNNNNNGTC	1 cut(s)	874
Eco130I	CCWWGG	3 cut(s)	349, 355, 543
Eco24I	GRGCYC	1 cut(s)	912
Eco47I	GGWCC	1 cut(s)	508
Eco88I	CYCGRG	1 cut(s)	929
EcoRI	GAATTC	2 cut(s)	248, 901
EcoRII	CCWGG	2 cut(s)	1099, 1171
EcoT14I	CCWWGG	3 cut(s)	349, 355, 543
EcoT38I	GRGCYC	1 cut(s)	912
ErhI	CCWWGG	3 cut(s)	349, 355, 543
FaeI	CATG	9 cut(s)	99, 428, 464, 479, 526, 547, 782, 901, 1184
FalI	AAGNNNNNCTT	2 cut(s)	423, 455
FaqI	GGGAC	1 cut(s)	379
FatI	CATG	9 cut(s)	95, 424, 460, 475, 522, 543, 778, 897, 1180
FauI	CCCGC	2 cut(s)	141, 919
FauNDI	CATATG	1 cut(s)	55
FbaI	TGATCA	1 cut(s)	1177
FokI	GGATG	3 cut(s)	284, 416, 824
FriOI	GRGCYC	1 cut(s)	912
FspBI	CTAG	3 cut(s)	147, 189, 561
GsuI	CTGGAG	1 cut(s)	1230
HaeIII	GGCC	2 cut(s)	354, 652
HapII	CCGG	5 cut(s)	137, 236, 314, 578, 1056
Hin1II	CATG	9 cut(s)	99, 428, 464, 479, 526, 547, 782, 901, 1184
HincII	GTYRAC	1 cut(s)	868
HindII	GTYRAC	1 cut(s)	868
HinfI	GANTC	6 cut(s)	83, 337, 746, 815, 1096, 1142
HpaII	CCGG	5 cut(s)	137, 236, 314, 578, 1056
HphI	GGTGA	1 cut(s)	1187
Hpy166II	GTNNAC	2 cut(s)	319, 868
Hpy188I	TCNGA	6 cut(s)	379, 684, 697, 907, 1111, 1147
Hpy188III	TCNNGA	6 cut(s)	236, 412, 502, 779, 929, 1087
Hpy8I	GTNNAC	2 cut(s)	319, 868
HpyAV	CCTTC	5 cut(s)	394, 499, 521, 624, 1127
HpyCH4III	ACNGT	4 cut(s)	218, 512, 1014, 1083
HpyCH4IV	ACGT	1 cut(s)	1106
HpyF10VI	GCNNNNNNNGC	4 cut(s)	557, 923, 974, 983
HpyF3I	CTNAG	1 cut(s)	906
HpySE526I	ACGT	1 cut(s)	1106
Hsp92II	CATG	9 cut(s)	99, 428, 464, 479, 526, 547, 782, 901, 1184
Kpn2I	TCCGGA	1 cut(s)	235
Ksp22I	TGATCA	1 cut(s)	1177
Kzo9I	GATC	2 cut(s)	232, 1177
LmnI	GCTCC	4 cut(s)	238, 469, 736, 931
Lsp1109I	GCAGC	7 cut(s)	144, 214, 544, 547, 901, 925, 964
LweI	GCATC	4 cut(s)	61, 652, 950, 1246
MabI	ACCWGGT	1 cut(s)	1171
MaeI	CTAG	3 cut(s)	147, 189, 561
MaeII	ACGT	1 cut(s)	1106
MaeIII	GTNAC	3 cut(s)	450, 788, 827
MalI	GATC	2 cut(s)	234, 1179
MbiI	CCGCTC	1 cut(s)	472
MboI	GATC	2 cut(s)	232, 1177
MboII	GAAGA	4 cut(s)	160, 304, 332, 779
MfeI	CAATTG	3 cut(s)	87, 605, 857
MhlI	GDGCHC	2 cut(s)	321, 912
MluCI	AATT	9 cut(s)	87, 181, 228, 248, 605, 857, 891, 901, 972
MlyI	GAGTC	1 cut(s)	755
MmeI	TCCRAC	3 cut(s)	714, 723, 1110
MnlI	CCTC	7 cut(s)	45, 266, 408, 450, 598, 961, 1197
MroI	TCCGGA	1 cut(s)	235
MroXI	GAANNNNTTC	1 cut(s)	1141
MseI	TTAA	1 cut(s)	420
MspA1I	CMGCKG	3 cut(s)	914, 968, 1031
MspI	CCGG	5 cut(s)	137, 236, 314, 578, 1056
MspR9I	CCNGG	3 cut(s)	1057, 1101, 1173
MunI	CAATTG	3 cut(s)	87, 605, 857
Mva1269I	GAATGC	1 cut(s)	917
MvaI	CCWGG	2 cut(s)	1101, 1173
MwoI	GCNNNNNNNGC	4 cut(s)	557, 923, 974, 983
NciI	CCSGG	1 cut(s)	1057
NcoI	CCATGG	1 cut(s)	543
NdeI	CATATG	1 cut(s)	55
NdeII	GATC	2 cut(s)	232, 1177
NlaIII	CATG	9 cut(s)	99, 428, 464, 479, 526, 547, 782, 901, 1184
NlaIV	GGNNCC	2 cut(s)	131, 1036
NmuCI	GTSAC	1 cut(s)	788
PagI	TCATGA	1 cut(s)	778
PcsI	WCGNNNNNNNCGW	2 cut(s)	258, 927
PctI	GAATGC	1 cut(s)	917
PdmI	GAANNNNTTC	1 cut(s)	1141
PfeI	GAWTC	5 cut(s)	83, 337, 815, 1096, 1142
PleI	GAGTC	1 cut(s)	754
PpsI	GAGTC	1 cut(s)	754
PsiI	TTATAA	1 cut(s)	269
Psp6I	CCWGG	2 cut(s)	1099, 1171
PspGI	CCWGG	2 cut(s)	1099, 1171
PspN4I	GGNNCC	2 cut(s)	131, 1036
PspPI	GGNCC	1 cut(s)	508
PstNI	CAGNNNCTG	1 cut(s)	701
PvuII	CAGCTG	2 cut(s)	968, 1031
SaqAI	TTAA	1 cut(s)	420
Sau3AI	GATC	2 cut(s)	232, 1177
Sau96I	GGNCC	1 cut(s)	508
SchI	GAGTC	1 cut(s)	755
ScrFI	CCNGG	3 cut(s)	1057, 1101, 1173
SduI	GDGCHC	2 cut(s)	321, 912
SexAI	ACCWGGT	1 cut(s)	1171
SfaNI	GCATC	4 cut(s)	61, 652, 950, 1246
SfcI	CTRYAG	1 cut(s)	954
SinI	GGWCC	1 cut(s)	508
SmlI	CTYRAG	1 cut(s)	12
SmoI	CTYRAG	1 cut(s)	12
Sse9I	AATT	9 cut(s)	87, 181, 228, 248, 605, 857, 891, 901, 972
SsiI	CCGC	6 cut(s)	18, 134, 472, 548, 602, 912
SspMI	CTAG	3 cut(s)	147, 189, 561
StyD4I	CCNGG	3 cut(s)	1055, 1099, 1171
StyI	CCWWGG	3 cut(s)	349, 355, 543
TaaI	ACNGT	4 cut(s)	218, 512, 1014, 1083
TaiI	ACGT	1 cut(s)	1109
TaqI	TCGA	1 cut(s)	657
TasI	AATT	9 cut(s)	87, 181, 228, 248, 605, 857, 891, 901, 972
TauI	GCSGC	3 cut(s)	21, 475, 551
TfiI	GAWTC	5 cut(s)	83, 337, 815, 1096, 1142
Tru1I	TTAA	1 cut(s)	420
Tru9I	TTAA	1 cut(s)	420
TseFI	GTSAC	1 cut(s)	788
TseI	GCWGC	7 cut(s)	157, 202, 532, 535, 914, 938, 977
Tsp45I	GTSAC	1 cut(s)	788
TspGWI	ACGGA	3 cut(s)	605, 1083, 1116
VneI	GTGCAC	1 cut(s)	317
VpaK11BI	GGWCC	1 cut(s)	508
XapI	RAATTY	2 cut(s)	248, 901
XcmI	CCANNNNNNNNNTGG	1 cut(s)	645
XmnI	GAANNNNTTC	1 cut(s)	1141
XspI	CTAG	3 cut(s)	147, 189, 561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.