Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002221

Physical Location & Seq

Genomic Coordinates Forward (+)

8728371 .. 8732016

Gene Structure 3646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G108700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

ATGGAGGGGACTCAAGGTGGTTCTAATGCACCAGCGCCTTTTCTTACAAAAACATATGACTTGGTGGATGACCCCTCATCCAACCGCGTTGTGTCTTGGAGTGAAACTGGTTGTAGTTTCGTGGTTTGGGATCCCACAGAGTTCGCCAAAGAAATGCTTCCCATGTATTTCAAACACAACAACTTTTCAAGCTTCGTGAGGCAGCTGAATACATATGGGTTTAGGAAGATTGATCCTGAACAATGGGAGTTTGCAAATGAGGAATTCTTAAGAGGAGGAAGACATCTGCTGAAGAAAATTCACCGCCGCAAGCCAATTCATAGTCATTCGATGCAGAATCATGAGTATTCTTCAGTTCCTTTAAGTGAGACAGAAAGAGAAGAATATGAGAAGAAAATCAATAGACTGAATCATGATAAAAGCTTGCTTGAGTTAGAGCTACAAAGGCATCAAAGAGAGAATCAAGAGTTTGACTATCAAATACAGATATTACAAGAACAACTGCAGAAAATGGAACATCAGCAGAAACAGTATACAACCTTCTTGGCTCAACTACTGCAGAAACCAGGATTAGCTTCTATACTTATGCAAAAATCAGAAATCCATAACAAAAAGAGAAGATTGTTGACATCTAGCCACTTTCCTGATGATTTCAAGATGGAAATTTTGAATTTGAATACTCTGAACGAAAACCTGGGTACAATTTCAACTCCCATAATAAAGTTTGACCAGCTTGAGAAGATGGAGTCTTCCTTAAACTTTTGGGAAGATTTTCTACATGGGATCGGGGAAGCAATGCCTGAAGAATTAAATGATATTGGCTCGTTATCTCAGGCCTCTCCCATCATTGTTACAGAAATACAAGACCCTGGCATGAATAGCAGGCCTTGCTCACCTAGATCGCGTTTATCTTCGCCAAATTCAATGAATGTTTCATCCCCAGAGGTGGTTGGGTCTGCAAATTTTCTTGACATCCTTGCTATAACATCAACATGCCACAATGTTGATTTCAGGCCAAAATCTTCAGGGATTGATATGAACTCTAAGCCCGATAGTGCTCCTGCGGCTGAGGCCTTGAAAGAAATGGTACAGGAAATGAAAAATGCCGAGCCTGCAGCGGCGAATGATATGTTTTGGGAACAGTGCCTGACAGAGACCCCTGGTTTAGATGATGCGCAGGAAGTACAGTCAGAAAGAGGGGATAGTGATGGCGGAGTGAGCGATACCAATCCAGCTATTCAGAAAAAGCTTTGGTGGAACACAGATGTAGATAACTTCACAAACCAAATAGGGCGCCTCACTCCAGCTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04212 ko05134 map04212 map05134

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

438

Amino Acids

49.86

Weight (kDa)

5.13

Isoelectric Point (pI)

50.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18880 AT5G45710 AT5G45710 AT5G45710 AT5G45710
fragaria_vesca	FvH4_3g07170 FvH4_3g07170 FvH4_6g27900
malus_domestica	MD00G1007800.v1.1 MD09G1233700.v1.1 MD10G1274400.v1.1 MD17G1230100.v1.1
prunus_persica	Prupe.3G108700_v2.0.a1 Prupe.3G108700_v2.0.a1 Prupe.4G068100_v2.0.a1 Prupe.4G068100_v2.0.a1 Prupe.4G068100_v2.0.a1 Prupe.4G068100_v2.0.a1 Prupe.4G068100_v2.0.a1
pyrus_communis	pycom05g27300 pycom09g15200 pycom10g22900 pycom17g23300
rosa_chinensis	RchiOBHm_Chr2g0131371 RchiOBHm_Chr5g0011961
rosa_laevigata	RLG00000019181 RLG00000031873
rosa_multiflora	Rmu_sc0001475.1_g000001 Rmu_ssc0000009.1_g000034
rosa_roxburghii	Rroxscaffold_1G00064630 Rroxscaffold_2G00113040
rosa_rugosa	Rorug02G0296200 Rorug04G0460200
rosa_samantha	Rh2AG349500 Rh2BG356400 Rh2CG335300 Rh2DG374300 Rh5AG091800 Rh5BG087700 Rh5CG101500 Rh5DG088300
rosa_wichuraiana	Rw2G028360 Rw5G008020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1176
AccB1I	GGYRCC	1 cut(s)	1293
AccI	GTMKAC	1 cut(s)	533
AccII	CGCG	2 cut(s)	87, 904
AciI	CCGC	6 cut(s)	85, 304, 307, 1064, 1118, 1212
AclWI	GGATC	4 cut(s)	125, 138, 227, 791
AcsI	RAATTY	6 cut(s)	263, 297, 663, 670, 919, 961
AcuI	CTGAAG	4 cut(s)	311, 336, 822, 1008
AcyI	GRCGYC	1 cut(s)	1294
AfaI	GTAC	3 cut(s)	700, 1089, 1185
AfiI	CCNNNNNNNGG	1 cut(s)	946
AflII	CTTAAG	1 cut(s)	268
AgsI	TTSAA	8 cut(s)	172, 189, 655, 670, 676, 708, 924, 1078
AjnI	CCWGG	4 cut(s)	565, 693, 868, 1159
AluBI	AGCT	9 cut(s)	192, 205, 423, 439, 575, 733, 1235, 1249, 1307
AluI	AGCT	9 cut(s)	192, 205, 423, 439, 575, 733, 1235, 1249, 1307
Alw21I	GWGCWC	1 cut(s)	1060
Alw26I	GTCTC	2 cut(s)	362, 1148
AlwI	GGATC	4 cut(s)	125, 138, 227, 791
AlwNI	CAGNNNCTG	1 cut(s)	1147
AoxI	GGCC	4 cut(s)	834, 884, 1013, 1071
ApeKI	GCWGC	2 cut(s)	202, 1115
ApoI	RAATTY	6 cut(s)	263, 297, 663, 670, 919, 961
Asp700I	GAANNNNTTC	2 cut(s)	156, 771
AspLEI	GCGC	3 cut(s)	37, 1177, 1296
AsuHPI	GGTGA	2 cut(s)	293, 885
BamHI	GGATCC	1 cut(s)	130
BanI	GGYRCC	1 cut(s)	1293
BarI	GAAGNNNNNNTAC	4 cut(s)	524, 556, 759, 791
BbsI	GAAGAC	2 cut(s)	286, 741
Bbv12I	GWGCWC	1 cut(s)	1060
BbvCI	CCTCAGC	1 cut(s)	1068
BbvI	GCAGC	2 cut(s)	214, 1127
BccI	CCATC	4 cut(s)	652, 736, 851, 1202
BciT130I	CCWGG	4 cut(s)	567, 695, 870, 1161
BcoDI	GTCTC	2 cut(s)	362, 1148
BfaI	CTAG	3 cut(s)	633, 897, 1308
BfmI	CTRYAG	3 cut(s)	503, 557, 1113
BfoI	RGCGCY	2 cut(s)	38, 1297
BfrI	CTTAAG	1 cut(s)	268
BisI	GCNGC	5 cut(s)	203, 307, 1065, 1116, 1119
BlsI	GCNGC	5 cut(s)	204, 308, 1066, 1117, 1120
Bme1390I	CCNGG	4 cut(s)	567, 695, 870, 1161
BmiI	GGNNCC	2 cut(s)	132, 1295
BmrFI	CCNGG	4 cut(s)	567, 695, 870, 1161
BmsI	GCATC	3 cut(s)	321, 457, 1162
BpiI	GAAGAC	2 cut(s)	286, 741
BpmI	CTGGAG	1 cut(s)	1287
Bpu10I	CCTNAGC	1 cut(s)	1068
BpuEI	CTTGAG	2 cut(s)	449, 755
BsaBI	GATNNNNATC	1 cut(s)	1227
BsaHI	GRCGYC	1 cut(s)	1294
BsaI	GGTCTC	1 cut(s)	1148
BsaJI	CCNNGG	3 cut(s)	694, 868, 1159
Bsc4I	CCNNNNNNNGG	1 cut(s)	946
Bse1I	ACTGG	1 cut(s)	112
Bse3DI	GCAATG	1 cut(s)	801
Bse8I	GATNNNNATC	1 cut(s)	1227
BseBI	CCWGG	4 cut(s)	567, 695, 870, 1161
BseDI	CCNNGG	3 cut(s)	694, 868, 1159
BseGI	GGATG	4 cut(s)	73, 77, 935, 972
BseJI	GATNNNNATC	1 cut(s)	1227
BseLI	CCNNNNNNNGG	1 cut(s)	946
BseMI	GCAATG	1 cut(s)	801
BseMII	CTCAG	2 cut(s)	845, 1059
BseNI	ACTGG	1 cut(s)	112
BseRI	GAGGAG	1 cut(s)	288
BseXI	GCAGC	2 cut(s)	214, 1127
Bsh1236I	CGCG	2 cut(s)	87, 904
BshFI	GGCC	4 cut(s)	836, 886, 1015, 1073
BshNI	GGYRCC	1 cut(s)	1293
BsiHKAI	GWGCWC	1 cut(s)	1060
BslFI	GGGAC	1 cut(s)	22
BslI	CCNNNNNNNGG	1 cut(s)	946
BsmAI	GTCTC	2 cut(s)	362, 1148
BsmFI	GGGAC	1 cut(s)	22
BsnI	GGCC	4 cut(s)	836, 886, 1015, 1073
Bso31I	GGTCTC	1 cut(s)	1148
Bsp1286I	GDGCHC	1 cut(s)	1060
Bsp143I	GATC	4 cut(s)	130, 232, 783, 899
BspACI	CCGC	6 cut(s)	85, 304, 307, 1064, 1118, 1212
BspANI	GGCC	4 cut(s)	836, 886, 1015, 1073
BspCNI	CTCAG	2 cut(s)	844, 1060
BspFNI	CGCG	2 cut(s)	87, 904
BspHI	TCATGA	2 cut(s)	340, 412
BspLI	GGNNCC	2 cut(s)	132, 1295
BspMAI	CTGCAG	3 cut(s)	507, 561, 1117
BspPI	GGATC	4 cut(s)	125, 138, 227, 791
BspT107I	GGYRCC	1 cut(s)	1293
BspTI	CTTAAG	1 cut(s)	268
BspTNI	GGTCTC	1 cut(s)	1148
BsrDI	GCAATG	1 cut(s)	801
BsrI	ACTGG	1 cut(s)	112
BssECI	CCNNGG	3 cut(s)	694, 868, 1159
BssMI	GATC	4 cut(s)	130, 232, 783, 899
BssNAI	GTATAC	1 cut(s)	534
BssNI	GRCGYC	1 cut(s)	1294
Bst1107I	GTATAC	1 cut(s)	534
Bst2UI	CCWGG	4 cut(s)	567, 695, 870, 1161
Bst4CI	ACNGT	3 cut(s)	531, 1143, 1188
BstACI	GRCGYC	1 cut(s)	1294
BstAFI	CTTAAG	1 cut(s)	268
BstAPI	GCANNNNNTGC	1 cut(s)	888
BstC8I	GCNNGC	4 cut(s)	311, 425, 884, 1113
BstDEI	CTNAG	3 cut(s)	831, 1044, 1068
BstF5I	GGATG	4 cut(s)	73, 77, 935, 972
BstFNI	CGCG	2 cut(s)	87, 904
BstH2I	RGCGCY	2 cut(s)	38, 1297
BstHHI	GCGC	3 cut(s)	37, 1177, 1296
BstKTI	GATC	4 cut(s)	133, 235, 786, 902
BstMAI	GTCTC	2 cut(s)	362, 1148
BstMBI	GATC	4 cut(s)	130, 232, 783, 899
BstMWI	GCNNNNNNNGC	7 cut(s)	445, 879, 888, 1064, 1070, 1112, 1218
BstNI	CCWGG	4 cut(s)	567, 695, 870, 1161
BstNSI	RCATGY	1 cut(s)	996
BstSCI	CCNGG	4 cut(s)	565, 693, 868, 1159
BstSFI	CTRYAG	3 cut(s)	503, 557, 1113
BstUI	CGCG	2 cut(s)	87, 904
BstV1I	GCAGC	2 cut(s)	214, 1127
BstV2I	GAAGAC	2 cut(s)	286, 741
BstX2I	RGATCY	1 cut(s)	130
BstYI	RGATCY	1 cut(s)	130
BstZ17I	GTATAC	1 cut(s)	534
BsuRI	GGCC	4 cut(s)	836, 886, 1015, 1073
BtsCI	GGATG	4 cut(s)	73, 77, 935, 972
BtsIMutI	CAGTG	1 cut(s)	1148
Cac8I	GCNNGC	4 cut(s)	311, 425, 884, 1113
CaiI	CAGNNNCTG	1 cut(s)	1147
CciI	TCATGA	2 cut(s)	340, 412
CfoI	GCGC	3 cut(s)	37, 1177, 1296
Csp6I	GTAC	3 cut(s)	699, 1088, 1184
CviAII	CATG	6 cut(s)	163, 341, 413, 779, 874, 993
CviQI	GTAC	3 cut(s)	699, 1088, 1184
DdeI	CTNAG	3 cut(s)	831, 1044, 1068
DinI	GGCGCC	1 cut(s)	1295
DpnI	GATC	4 cut(s)	132, 234, 785, 901
DpnII	GATC	4 cut(s)	130, 232, 783, 899
EciI	GGCGGA	1 cut(s)	1227
Eco147I	AGGCCT	3 cut(s)	836, 886, 1073
Eco31I	GGTCTC	1 cut(s)	1148
Eco57I	CTGAAG	4 cut(s)	311, 336, 822, 1008
EcoRI	GAATTC	1 cut(s)	263
EcoRII	CCWGG	4 cut(s)	565, 693, 868, 1159
EgeI	GGCGCC	1 cut(s)	1295
EheI	GGCGCC	1 cut(s)	1295
FaeI	CATG	6 cut(s)	166, 344, 416, 782, 877, 996
FalI	AAGNNNNNCTT	2 cut(s)	141, 173
FaqI	GGGAC	1 cut(s)	22
FatI	CATG	6 cut(s)	162, 340, 412, 778, 873, 992
FauNDI	CATATG	2 cut(s)	55, 214
FblI	GTMKAC	1 cut(s)	533
Fnu4HI	GCNGC	5 cut(s)	203, 307, 1065, 1116, 1119
FokI	GGATG	4 cut(s)	64, 80, 922, 959
Fsp4HI	GCNGC	5 cut(s)	203, 307, 1065, 1116, 1119
FspBI	CTAG	3 cut(s)	633, 897, 1308
FspI	TGCGCA	1 cut(s)	1176
GlaI	GCGC	3 cut(s)	36, 1176, 1295
GluI	GCNGC	5 cut(s)	203, 307, 1065, 1116, 1119
GsuI	CTGGAG	1 cut(s)	1287
HaeII	RGCGCY	2 cut(s)	38, 1297
HaeIII	GGCC	4 cut(s)	836, 886, 1015, 1073
HhaI	GCGC	3 cut(s)	37, 1177, 1296
Hin1I	GRCGYC	1 cut(s)	1294
Hin1II	CATG	6 cut(s)	166, 344, 416, 782, 877, 996
Hin6I	GCGC	3 cut(s)	35, 1175, 1294
HinP1I	GCGC	3 cut(s)	35, 1175, 1294
HincII	GTYRAC	1 cut(s)	627
HindII	GTYRAC	1 cut(s)	627
HindIII	AAGCTT	3 cut(s)	190, 421, 1247
HinfI	GANTC	5 cut(s)	10, 337, 409, 460, 746
HphI	GGTGA	2 cut(s)	293, 885
Hpy166II	GTNNAC	2 cut(s)	534, 627
Hpy188I	TCNGA	4 cut(s)	598, 684, 1192, 1242
Hpy188III	TCNNGA	8 cut(s)	196, 236, 341, 413, 464, 644, 655, 968
Hpy8I	GTNNAC	2 cut(s)	534, 627
HpyAV	CCTTC	1 cut(s)	550
HpyCH4III	ACNGT	3 cut(s)	531, 1143, 1188
HpyCH4V	TGCA	8 cut(s)	29, 254, 334, 505, 559, 589, 959, 1115
HpyF10VI	GCNNNNNNNGC	7 cut(s)	445, 879, 888, 1064, 1070, 1112, 1218
HpyF3I	CTNAG	3 cut(s)	831, 1044, 1068
Hsp92I	GRCGYC	1 cut(s)	1294
Hsp92II	CATG	6 cut(s)	166, 344, 416, 782, 877, 996
HspAI	GCGC	3 cut(s)	35, 1175, 1294
KasI	GGCGCC	1 cut(s)	1293
Kzo9I	GATC	4 cut(s)	130, 232, 783, 899
LmnI	GCTCC	1 cut(s)	1063
Lsp1109I	GCAGC	2 cut(s)	214, 1127
LweI	GCATC	3 cut(s)	321, 457, 1162
MaeI	CTAG	3 cut(s)	633, 897, 1308
MaeIII	GTNAC	1 cut(s)	850
MalI	GATC	4 cut(s)	132, 234, 785, 901
MboI	GATC	4 cut(s)	130, 232, 783, 899
MflI	RGATCY	1 cut(s)	130
MhlI	GDGCHC	1 cut(s)	1060
MluCI	AATT	9 cut(s)	263, 297, 315, 663, 670, 702, 806, 919, 961
Mly113I	GGCGCC	1 cut(s)	1294
MlyI	GAGTC	2 cut(s)	4, 755
MmeI	TCCRAC	1 cut(s)	105
MroXI	GAANNNNTTC	2 cut(s)	156, 771
MseI	TTAA	4 cut(s)	269, 362, 755, 809
MslI	CAYNNNNRTG	1 cut(s)	991
MspA1I	CMGCKG	2 cut(s)	205, 1118
MspCI	CTTAAG	1 cut(s)	268
MspR9I	CCNGG	4 cut(s)	567, 695, 870, 1161
MvaI	CCWGG	4 cut(s)	567, 695, 870, 1161
MvnI	CGCG	2 cut(s)	87, 904
MwoI	GCNNNNNNNGC	7 cut(s)	445, 879, 888, 1064, 1070, 1112, 1218
NarI	GGCGCC	1 cut(s)	1294
NdeI	CATATG	2 cut(s)	55, 214
NdeII	GATC	4 cut(s)	130, 232, 783, 899
NlaIII	CATG	6 cut(s)	166, 344, 416, 782, 877, 996
NlaIV	GGNNCC	2 cut(s)	132, 1295
NmeAIII	GCCGAG	1 cut(s)	1132
NsbI	TGCGCA	1 cut(s)	1176
NspI	RCATGY	1 cut(s)	996
PagI	TCATGA	2 cut(s)	340, 412
PceI	AGGCCT	3 cut(s)	836, 886, 1073
PdmI	GAANNNNTTC	2 cut(s)	156, 771
PfeI	GAWTC	3 cut(s)	337, 409, 460
PkrI	GCNGC	5 cut(s)	204, 308, 1066, 1117, 1120
PleI	GAGTC	2 cut(s)	4, 754
PluTI	GGCGCC	1 cut(s)	1297
PpsI	GAGTC	2 cut(s)	4, 754
Psp6I	CCWGG	4 cut(s)	565, 693, 868, 1159
PspGI	CCWGG	4 cut(s)	565, 693, 868, 1159
PspN4I	GGNNCC	2 cut(s)	132, 1295
PstI	CTGCAG	3 cut(s)	507, 561, 1117
PstNI	CAGNNNCTG	1 cut(s)	1147
PsuI	RGATCY	1 cut(s)	130
PvuII	CAGCTG	1 cut(s)	205
RsaI	GTAC	3 cut(s)	700, 1089, 1185
RsaNI	GTAC	3 cut(s)	699, 1088, 1184
RseI	CAYNNNNRTG	1 cut(s)	991
SaqAI	TTAA	4 cut(s)	269, 362, 755, 809
SatI	GCNGC	5 cut(s)	203, 307, 1065, 1116, 1119
Sau3AI	GATC	4 cut(s)	130, 232, 783, 899
SchI	GAGTC	2 cut(s)	4, 755
ScrFI	CCNGG	4 cut(s)	567, 695, 870, 1161
SduI	GDGCHC	1 cut(s)	1060
SfaNI	GCATC	3 cut(s)	321, 457, 1162
SfcI	CTRYAG	3 cut(s)	503, 557, 1113
SfoI	GGCGCC	1 cut(s)	1295
SmiMI	CAYNNNNRTG	1 cut(s)	991
SmlI	CTYRAG	4 cut(s)	12, 268, 428, 734
SmoI	CTYRAG	4 cut(s)	12, 268, 428, 734
Sse9I	AATT	9 cut(s)	263, 297, 315, 663, 670, 702, 806, 919, 961
SseBI	AGGCCT	3 cut(s)	836, 886, 1073
SsiI	CCGC	6 cut(s)	85, 304, 307, 1064, 1118, 1212
SspDI	GGCGCC	1 cut(s)	1293
SspMI	CTAG	3 cut(s)	633, 897, 1308
StuI	AGGCCT	3 cut(s)	836, 886, 1073
StyD4I	CCNGG	4 cut(s)	565, 693, 868, 1159
TaaI	ACNGT	3 cut(s)	531, 1143, 1188
TaqI	TCGA	1 cut(s)	329
TasI	AATT	9 cut(s)	263, 297, 315, 663, 670, 702, 806, 919, 961
TatI	WGTACW	1 cut(s)	1183
TauI	GCSGC	3 cut(s)	309, 1067, 1121
TfiI	GAWTC	3 cut(s)	337, 409, 460
Tru1I	TTAA	4 cut(s)	269, 362, 755, 809
Tru9I	TTAA	4 cut(s)	269, 362, 755, 809
TscAI	CASTG	1 cut(s)	1148
TseI	GCWGC	2 cut(s)	202, 1115
TspDTI	ATGAA	6 cut(s)	308, 890, 924, 941, 1052, 1112
TspRI	CASTG	1 cut(s)	1148
Vha464I	CTTAAG	1 cut(s)	268
XapI	RAATTY	6 cut(s)	263, 297, 663, 670, 919, 961
XceI	RCATGY	1 cut(s)	996
XmiI	GTMKAC	1 cut(s)	533
XmnI	GAANNNNTTC	2 cut(s)	156, 771
XspI	CTAG	3 cut(s)	633, 897, 1308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.