Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0002221

Physical Location & Seq

Genomic Coordinates Forward (+)

25189952 .. 25191372

Gene Structure 1421 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g22900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGGAGGAAGTTCAAGGTGGCACGAGTTCGCTGCCTCCCTTCCTTTCCAAGACATATGAGATGGTAGATGATGCTTCAACAGATTCAATTGTGTCATGGAGTGCCAGTAATAAGAGCTTCATTGTTTGGAATCCGCCGGAGTTCGCTAGGGATTTGCTGCCAAAGTTCTTCAAGCACAACAACTTCTCTAGCTTCATCAGGCAACTCAATACCTACGGTTTTAGAAAAATTGATCCGGAGCAATGGGAATTCGCCAATGACGATTTTATTAGAGGTCAGCCACACATTATGAAGAATATCCGTAGGCGAAAGCCGGTGCACAGCCACTCTTTGCAGAATCTTCAAGTCCAAGGGCAAGGGACTTCATTGTCCGAAGCTGAACGGCAGAGCATGAAGGTTGAAATCGAGAGGCTTAAACATGAGAAAGAACGCCTTGGTGTGGAGGTACAGAGGCATGAGCAGGAGCGGCATGGATTGGAGTTGCAGATGCAGTTCTTGATGGACAGTTTGCAAGACATGGAAAAGCAGCAGCAAACCATGGCGGCTTTTGTGGCTAGGGTTTTGCAGAAACCGCGGATTGCCTCCAATCCTGTTCCGCAGTTAGAAGTCCGTGAGCGAAAGAGAAGGTTGCCAAGAATCAGTTGGTCCTTCGATGATGCTAACAGTGGATATAATCAGATGGTTAGTTCACAAGCTGTAATTAGAGAAAGTGGGAGTATGGAAAAGTTGGAGCAGTTGGAGTCTTTCTTAACATTTTGGGAAGATACCATTCATGATGTTAGTCACAATAACATCCAGGTTGGTTCAAACCGAGAGGCGGATGAATCTACAAGTGGTAACGAAAGCACAGCTTTGTCTTCCATACAACTGAATGCTGACATTCGGTCAAAATCCCCTGGAATTGACATGAATGCTGAACCCCCTGCTTCTGTTGCTCCCAAGCCTGCTCCATCACAATCCTCGAAAGAACAAACAGCTGGAATTGCTGCTTCTGCACCCACCACCGCCTTGATACAACAAACATCTAAAGAAAAAACAGATGGAACCACCGCTTCTGCAGCCACTGGGGTCAATGACGTATTTTGGGAACAGTTCTTAACAGAGAATCCTGGTACGTCGGAAGCACAGGAAGTTCTGATCGAAAGAAAGGATTCCGATGGTAAAAAGAACGACAGCAAACCTGGTGATCATGGTATGTTGTGGTGGAATATGAGGAATGTAAATAACCTTACAGAACAGATGGGGCATCTTACTCCAGTAGAGAAAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0042493 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046983 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

424

Amino Acids

47.78

Weight (kDa)

5.58

Isoelectric Point (pI)

51.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSF_DNA-bind	PF00447	14 - 103	5.3e-30	HSF-type DNA-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18880 AT5G45710 AT5G45710 AT5G45710 AT5G45710
fragaria_vesca	FvH4_3g07170 FvH4_3g07170 FvH4_6g27900
malus_domestica	MD00G1007800.v1.1 MD09G1233700.v1.1 MD10G1274400.v1.1 MD17G1230100.v1.1
prunus_persica	Prupe.3G108700_v2.0.a1 Prupe.3G108700_v2.0.a1 Prupe.4G068100_v2.0.a1 Prupe.4G068100_v2.0.a1 Prupe.4G068100_v2.0.a1 Prupe.4G068100_v2.0.a1 Prupe.4G068100_v2.0.a1
pyrus_communis	pycom05g27300 pycom09g15200 pycom10g22900 pycom17g23300
rosa_chinensis	RchiOBHm_Chr2g0131371 RchiOBHm_Chr5g0011961
rosa_laevigata	RLG00000019181 RLG00000031873
rosa_multiflora	Rmu_sc0001475.1_g000001 Rmu_ssc0000009.1_g000034
rosa_roxburghii	Rroxscaffold_1G00064630 Rroxscaffold_2G00113040
rosa_rugosa	Rorug02G0296200 Rorug04G0460200
rosa_samantha	Rh2AG349500 Rh2BG356400 Rh2CG335300 Rh2DG374300 Rh5AG091800 Rh5BG087700 Rh5CG101500 Rh5DG088300
rosa_wichuraiana	Rw2G028360 Rw5G008020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	367
AccBSI	CCGCTC	1 cut(s)	466
AccII	CGCG	1 cut(s)	574
AccIII	TCCGGA	1 cut(s)	235
AciI	CCGC	9 cut(s)	134, 466, 542, 572, 574, 596, 818, 1005, 1050
AclWI	GGATC	1 cut(s)	227
AcsI	RAATTY	1 cut(s)	248
AfaI	GTAC	2 cut(s)	447, 1114
AfiI	CCNNNNNNNGG	2 cut(s)	439, 817
AgsI	TTSAA	7 cut(s)	14, 78, 87, 172, 344, 401, 807
AhdI	GACNNNNNGTC	1 cut(s)	883
AjnI	CCWGG	4 cut(s)	795, 895, 1108, 1180
AluBI	AGCT	6 cut(s)	117, 192, 377, 695, 851, 977
AluI	AGCT	6 cut(s)	117, 192, 377, 695, 851, 977
Alw21I	GWGCWC	1 cut(s)	321
Alw44I	GTGCAC	1 cut(s)	317
AlwI	GGATC	1 cut(s)	227
AlwNI	CAGNNNCTG	1 cut(s)	1064
Aor13HI	TCCGGA	1 cut(s)	235
ApaLI	GTGCAC	1 cut(s)	317
ApeKI	GCWGC	6 cut(s)	31, 157, 526, 529, 986, 1058
ApoI	RAATTY	1 cut(s)	248
Asp700I	GAANNNNTTC	1 cut(s)	1150
AspS9I	GGNCC	1 cut(s)	645
AsuHPI	GGTGA	1 cut(s)	1196
AvaII	GGWCC	1 cut(s)	645
BaeGI	GKGCMC	1 cut(s)	321
BauI	CACGAG	1 cut(s)	22
BbsI	GAAGAC	1 cut(s)	849
Bbv12I	GWGCWC	1 cut(s)	321
BbvI	GCAGC	6 cut(s)	18, 144, 538, 541, 973, 1070
BccI	CCATC	7 cut(s)	55, 493, 673, 958, 1034, 1151, 1234
BceAI	ACGGC	1 cut(s)	398
BcgI	CGANNNNNNTGC	2 cut(s)	13, 47
BciT130I	CCWGG	4 cut(s)	797, 897, 1110, 1182
BclI	TGATCA	1 cut(s)	1186
BfaI	CTAG	3 cut(s)	147, 189, 555
BfmI	CTRYAG	1 cut(s)	1056
BisI	GCNGC	8 cut(s)	32, 158, 467, 527, 530, 543, 987, 1059
BlsI	GCNGC	8 cut(s)	33, 159, 468, 528, 531, 544, 988, 1060
Bme1390I	CCNGG	4 cut(s)	797, 897, 1110, 1182
Bme18I	GGWCC	1 cut(s)	645
BmeRI	GACNNNNNGTC	1 cut(s)	883
BmgT120I	GGNCC	1 cut(s)	645
BmiI	GGNNCC	1 cut(s)	1045
BmrFI	CCNGG	4 cut(s)	797, 897, 1110, 1182
BmrI	ACTGGG	1 cut(s)	1074
BmsI	GCATC	4 cut(s)	61, 477, 646, 1255
BmuI	ACTGGG	1 cut(s)	1074
BpiI	GAAGAC	1 cut(s)	849
BpmI	CTGGAG	1 cut(s)	1239
BsaJI	CCNNGG	5 cut(s)	349, 433, 537, 572, 895
BsaWI	WCCGGW	1 cut(s)	235
BsaXI	ACNNNNNCTCC	2 cut(s)	91, 121
Bsc4I	CCNNNNNNNGG	2 cut(s)	439, 817
Bse118I	RCCGGY	1 cut(s)	313
Bse1I	ACTGG	3 cut(s)	105, 1069, 1256
Bse3DI	GCAATG	1 cut(s)	248
BseAI	TCCGGA	1 cut(s)	235
BseBI	CCWGG	4 cut(s)	797, 897, 1110, 1182
BseDI	CCNNGG	5 cut(s)	349, 433, 537, 572, 895
BseGI	GGATG	2 cut(s)	792, 826
BseLI	CCNNNNNNNGG	2 cut(s)	439, 817
BseMI	GCAATG	1 cut(s)	248
BseNI	ACTGG	3 cut(s)	105, 1069, 1256
BseSI	GKGCMC	1 cut(s)	321
BseXI	GCAGC	6 cut(s)	18, 144, 538, 541, 973, 1070
BsgI	GTGCAG	1 cut(s)	978
Bsh1236I	CGCG	1 cut(s)	574
BsiHKAI	GWGCWC	1 cut(s)	321
BsiSI	CCGG	3 cut(s)	137, 236, 314
BslFI	GGGAC	1 cut(s)	373
BslI	CCNNNNNNNGG	2 cut(s)	439, 817
BsmFI	GGGAC	1 cut(s)	373
BsmI	GAATGC	2 cut(s)	877, 916
Bsp1286I	GDGCHC	1 cut(s)	321
Bsp13I	TCCGGA	1 cut(s)	235
Bsp143I	GATC	3 cut(s)	232, 1137, 1186
Bsp19I	CCATGG	1 cut(s)	537
BspACI	CCGC	9 cut(s)	134, 466, 542, 572, 574, 596, 818, 1005, 1050
BspEI	TCCGGA	1 cut(s)	235
BspFNI	CGCG	1 cut(s)	574
BspHI	TCATGA	1 cut(s)	772
BspLI	GGNNCC	1 cut(s)	1045
BspMAI	CTGCAG	1 cut(s)	1060
BspPI	GGATC	1 cut(s)	227
BsrBI	CCGCTC	1 cut(s)	466
BsrDI	GCAATG	1 cut(s)	248
BsrFI	RCCGGY	1 cut(s)	313
BsrI	ACTGG	3 cut(s)	105, 1069, 1256
BssAI	RCCGGY	1 cut(s)	313
BssECI	CCNNGG	5 cut(s)	349, 433, 537, 572, 895
BssMI	GATC	3 cut(s)	232, 1137, 1186
BssSI	CACGAG	1 cut(s)	22
BssT1I	CCWWGG	3 cut(s)	349, 433, 537
Bst2BI	CACGAG	1 cut(s)	22
Bst2UI	CCWGG	4 cut(s)	797, 897, 1110, 1182
Bst4CI	ACNGT	4 cut(s)	218, 506, 665, 1092
BstC8I	GCNNGC	1 cut(s)	945
BstDSI	CCRYGG	2 cut(s)	537, 572
BstF5I	GGATG	2 cut(s)	792, 826
BstFNI	CGCG	1 cut(s)	574
BstKTI	GATC	3 cut(s)	235, 1140, 1189
BstMBI	GATC	3 cut(s)	232, 1137, 1186
BstMWI	GCNNNNNNNGC	7 cut(s)	466, 551, 571, 932, 983, 992, 1058
BstNI	CCWGG	4 cut(s)	797, 897, 1110, 1182
BstSCI	CCNGG	4 cut(s)	795, 895, 1108, 1180
BstSFI	CTRYAG	1 cut(s)	1056
BstSLI	GKGCMC	1 cut(s)	321
BstUI	CGCG	1 cut(s)	574
BstV1I	GCAGC	6 cut(s)	18, 144, 538, 541, 973, 1070
BstV2I	GAAGAC	1 cut(s)	849
BtgI	CCRYGG	2 cut(s)	537, 572
BtsCI	GGATG	2 cut(s)	792, 826
BtsIMutI	CAGTG	2 cut(s)	670, 1062
Cac8I	GCNNGC	1 cut(s)	945
CaiI	CAGNNNCTG	1 cut(s)	1064
CciI	TCATGA	1 cut(s)	772
Cfr10I	RCCGGY	1 cut(s)	313
Cfr13I	GGNCC	1 cut(s)	645
Cfr42I	CCGCGG	1 cut(s)	575
CsiI	ACCWGGT	1 cut(s)	1180
Csp6I	GTAC	2 cut(s)	446, 1113
CviQI	GTAC	2 cut(s)	446, 1113
DpnI	GATC	3 cut(s)	234, 1139, 1188
DpnII	GATC	3 cut(s)	232, 1137, 1186
DrdI	GACNNNNNNGTC	1 cut(s)	367
DriI	GACNNNNNGTC	1 cut(s)	883
DseDI	GACNNNNNNGTC	1 cut(s)	367
Eam1105I	GACNNNNNGTC	1 cut(s)	883
EciI	GGCGGA	2 cut(s)	123, 833
Eco130I	CCWWGG	3 cut(s)	349, 433, 537
Eco47I	GGWCC	1 cut(s)	645
EcoRI	GAATTC	1 cut(s)	248
EcoRII	CCWGG	4 cut(s)	795, 895, 1108, 1180
EcoT14I	CCWWGG	3 cut(s)	349, 433, 537
ErhI	CCWWGG	3 cut(s)	349, 433, 537
FalI	AAGNNNNNCTT	4 cut(s)	417, 449, 835, 867
FaqI	GGGAC	1 cut(s)	373
FauNDI	CATATG	1 cut(s)	55
FbaI	TGATCA	1 cut(s)	1186
Fnu4HI	GCNGC	8 cut(s)	32, 158, 467, 527, 530, 543, 987, 1059
FokI	GGATG	2 cut(s)	779, 833
Fsp4HI	GCNGC	8 cut(s)	32, 158, 467, 527, 530, 543, 987, 1059
FspBI	CTAG	3 cut(s)	147, 189, 555
GluI	GCNGC	8 cut(s)	32, 158, 467, 527, 530, 543, 987, 1059
GsuI	CTGGAG	1 cut(s)	1239
HapII	CCGG	3 cut(s)	137, 236, 314
HinfI	GANTC	8 cut(s)	83, 130, 337, 636, 740, 824, 1105, 1151
HpaII	CCGG	3 cut(s)	137, 236, 314
HphI	GGTGA	1 cut(s)	1196
Hpy166II	GTNNAC	2 cut(s)	319, 689
Hpy188I	TCNGA	5 cut(s)	373, 678, 1120, 1137, 1156
Hpy188III	TCNNGA	4 cut(s)	236, 406, 496, 773
Hpy8I	GTNNAC	2 cut(s)	319, 689
Hpy99I	CGWCG	1 cut(s)	1120
HpyAV	CCTTC	4 cut(s)	49, 388, 618, 658
HpyCH4III	ACNGT	4 cut(s)	218, 506, 665, 1092
HpyCH4IV	ACGT	2 cut(s)	1077, 1115
HpyCH4V	TGCA	8 cut(s)	319, 334, 484, 490, 511, 565, 995, 1058
HpyF10VI	GCNNNNNNNGC	7 cut(s)	466, 551, 571, 932, 983, 992, 1058
HpySE526I	ACGT	2 cut(s)	1077, 1115
Kpn2I	TCCGGA	1 cut(s)	235
Ksp22I	TGATCA	1 cut(s)	1186
KspI	CCGCGG	1 cut(s)	575
Kzo9I	GATC	3 cut(s)	232, 1137, 1186
LmnI	GCTCC	5 cut(s)	238, 463, 730, 940, 952
Lsp1109I	GCAGC	6 cut(s)	18, 144, 538, 541, 973, 1070
LweI	GCATC	4 cut(s)	61, 477, 646, 1255
MabI	ACCWGGT	1 cut(s)	1180
MaeI	CTAG	3 cut(s)	147, 189, 555
MaeII	ACGT	2 cut(s)	1077, 1115
MaeIII	GTNAC	2 cut(s)	782, 836
MalI	GATC	3 cut(s)	234, 1139, 1188
MbiI	CCGCTC	1 cut(s)	466
MboI	GATC	3 cut(s)	232, 1137, 1186
MboII	GAAGA	5 cut(s)	160, 304, 332, 773, 849
MfeI	CAATTG	1 cut(s)	87
MhlI	GDGCHC	1 cut(s)	321
MluCI	AATT	6 cut(s)	87, 228, 248, 699, 900, 981
MlyI	GAGTC	1 cut(s)	749
MmeI	TCCRAC	3 cut(s)	708, 717, 1098
MnlI	CCTC	9 cut(s)	45, 266, 402, 436, 444, 592, 808, 970, 1206
MroI	TCCGGA	1 cut(s)	235
MroXI	GAANNNNTTC	1 cut(s)	1150
MseI	TTAA	3 cut(s)	414, 749, 1097
MspA1I	CMGCKG	2 cut(s)	574, 977
MspI	CCGG	3 cut(s)	137, 236, 314
MspR9I	CCNGG	4 cut(s)	797, 897, 1110, 1182
MunI	CAATTG	1 cut(s)	87
Mva1269I	GAATGC	2 cut(s)	877, 916
MvaI	CCWGG	4 cut(s)	797, 897, 1110, 1182
MvnI	CGCG	1 cut(s)	574
MwoI	GCNNNNNNNGC	7 cut(s)	466, 551, 571, 932, 983, 992, 1058
NcoI	CCATGG	1 cut(s)	537
NdeI	CATATG	1 cut(s)	55
NdeII	GATC	3 cut(s)	232, 1137, 1186
NlaIV	GGNNCC	1 cut(s)	1045
NmuCI	GTSAC	1 cut(s)	782
PagI	TCATGA	1 cut(s)	772
PcsI	WCGNNNNNNNCGW	1 cut(s)	258
PctI	GAATGC	2 cut(s)	877, 916
PdmI	GAANNNNTTC	1 cut(s)	1150
PfeI	GAWTC	7 cut(s)	83, 130, 337, 636, 824, 1105, 1151
PkrI	GCNGC	8 cut(s)	33, 159, 468, 528, 531, 544, 988, 1060
PleI	GAGTC	1 cut(s)	748
PpsI	GAGTC	1 cut(s)	748
Psp6I	CCWGG	4 cut(s)	795, 895, 1108, 1180
PspGI	CCWGG	4 cut(s)	795, 895, 1108, 1180
PspN4I	GGNNCC	1 cut(s)	1045
PspPI	GGNCC	1 cut(s)	645
PstI	CTGCAG	1 cut(s)	1060
PstNI	CAGNNNCTG	1 cut(s)	1064
PvuII	CAGCTG	1 cut(s)	977
RsaI	GTAC	2 cut(s)	447, 1114
RsaNI	GTAC	2 cut(s)	446, 1113
SacII	CCGCGG	1 cut(s)	575
SaqAI	TTAA	3 cut(s)	414, 749, 1097
SatI	GCNGC	8 cut(s)	32, 158, 467, 527, 530, 543, 987, 1059
Sau3AI	GATC	3 cut(s)	232, 1137, 1186
Sau96I	GGNCC	1 cut(s)	645
SchI	GAGTC	1 cut(s)	749
ScrFI	CCNGG	4 cut(s)	797, 897, 1110, 1182
SduI	GDGCHC	1 cut(s)	321
SexAI	ACCWGGT	1 cut(s)	1180
SfaNI	GCATC	4 cut(s)	61, 477, 646, 1255
SfcI	CTRYAG	1 cut(s)	1056
Sfr303I	CCGCGG	1 cut(s)	575
SgrBI	CCGCGG	1 cut(s)	575
SinI	GGWCC	1 cut(s)	645
Sse9I	AATT	6 cut(s)	87, 228, 248, 699, 900, 981
SsiI	CCGC	9 cut(s)	134, 466, 542, 572, 574, 596, 818, 1005, 1050
SspMI	CTAG	3 cut(s)	147, 189, 555
StyD4I	CCNGG	4 cut(s)	795, 895, 1108, 1180
StyI	CCWWGG	3 cut(s)	349, 433, 537
TaaI	ACNGT	4 cut(s)	218, 506, 665, 1092
TaiI	ACGT	2 cut(s)	1080, 1118
TaqI	TCGA	4 cut(s)	405, 651, 962, 1140
TaqII	GACCGA	1 cut(s)	873
TasI	AATT	6 cut(s)	87, 228, 248, 699, 900, 981
TauI	GCSGC	2 cut(s)	469, 545
TfiI	GAWTC	7 cut(s)	83, 130, 337, 636, 824, 1105, 1151
Tru1I	TTAA	3 cut(s)	414, 749, 1097
Tru9I	TTAA	3 cut(s)	414, 749, 1097
TscAI	CASTG	2 cut(s)	670, 1069
TseFI	GTSAC	1 cut(s)	782
TseI	GCWGC	6 cut(s)	31, 157, 526, 529, 986, 1058
Tsp45I	GTSAC	1 cut(s)	782
TspDTI	ATGAA	8 cut(s)	109, 184, 305, 354, 407, 761, 837, 923
TspGWI	ACGGA	2 cut(s)	290, 599
TspRI	CASTG	2 cut(s)	670, 1069
VneI	GTGCAC	1 cut(s)	317
VpaK11BI	GGWCC	1 cut(s)	645
XapI	RAATTY	1 cut(s)	248
XcmI	CCANNNNNNNNNTGG	1 cut(s)	639
XmnI	GAANNNNTTC	1 cut(s)	1150
XspI	CTAG	3 cut(s)	147, 189, 555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.