Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002221

Physical Location & Seq

Genomic Coordinates Forward (+)

18540665 .. 18542864

Gene Structure 2200 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G45710.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGATGAAAATAATGGAGGTTCAAGCTCACTTCCACCTTTCCTTACTAAAACATATGAAATGGTTGATGATTCTTCTTCTGACTCGGTCGTTGCTTGGAGCGAAAACAACAAAAGCTTCATCGTCAAGAATCCAGCAGAGTTTTCAAGAGACCTTCTTCCGAGATTCTTCAAGCATAAGAATTTCTCAAGTTTCATCCGTCAGCTTAATACATATGGTTTTCGAAAAGTAGATCCTGAGAAATGGGAATTCTTGAATGATGATTTTGTTAGAGGTCGACCTTACCTTATGAAGAACATTCATAGACGAAAACCGGTTCATAGCCACTCGTTAGTGAATCTACAAGCGCAAAATCCTTTGACGGAATCAGAAAGACGGAGCATGGAGGATCAGATAGAAAGACTGAAAAATGAGAAAGAAGGCCTTCTTGCGGAGTTACAGAACCAAGAGCAAGAACGGAAAGAGTTTGAGCTGCAAGTAACGACATTGAAAGATCGGTTACAACATATGGAACAACATCAGAAATCAATAGTGGCATATGTTTCACAGGTTTTGGGAAAACCAGGACTTTCACTAAACCTCGAAAACCATGAGAGAAGAAAAAGAAGATTTCAAGAGAACTCTCTTCCTCCAAGCAGTTCACACATAGAACAGGTCGAAAAGTTAGAATCTTCGCTAACGTTTTGGGAGAATCTTGTATCGGAATCATGCGAGAAGAGCGGTTTGCAGTCATCAAGCATGGATCATGATGCAGCTGAGTCAAGTCTAAGTATTGGCGATACACGACCCAAATCATCGAAGATTGATATGAACTCAGAGCCGCCCGTTACCGTTACTGCGCCTGCTCCAAAAACAGGCGTTAACGATGACTTTTGGGAACAATGTTTGACAGAGAACCCTGGATCAACCGAGCAACAAGAAGTTCAGTCAGAGAGAAGAGATGTCGGTAATGATAATAATGGTAATAAGATTGGAAATCAAAGGACGTATTGGTGGAATTCAGGGAATGTAAATAACATTACAGAGAAAGCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0003006 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0009266 GO:0009408 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009958 GO:0010033 GO:0010154 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046983 GO:0048364 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048530 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090696 GO:0090698 GO:0099402 GO:0140110 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

345

Amino Acids

39.65

Weight (kDa)

5.61

Isoelectric Point (pI)

60.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSF_DNA-bind	PF00447	14 - 103	2e-29	HSF-type DNA-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18880 AT5G45710 AT5G45710 AT5G45710 AT5G45710
fragaria_vesca	FvH4_3g07170 FvH4_3g07170 FvH4_6g27900
malus_domestica	MD00G1007800.v1.1 MD09G1233700.v1.1 MD10G1274400.v1.1 MD17G1230100.v1.1
prunus_persica	Prupe.3G108700_v2.0.a1 Prupe.3G108700_v2.0.a1 Prupe.4G068100_v2.0.a1 Prupe.4G068100_v2.0.a1 Prupe.4G068100_v2.0.a1 Prupe.4G068100_v2.0.a1 Prupe.4G068100_v2.0.a1
pyrus_communis	pycom05g27300 pycom09g15200 pycom10g22900 pycom17g23300
rosa_chinensis	RchiOBHm_Chr2g0131371 RchiOBHm_Chr5g0011961
rosa_laevigata	RLG00000019181 RLG00000031873
rosa_multiflora	Rmu_sc0001475.1_g000001 Rmu_ssc0000009.1_g000034
rosa_roxburghii	Rroxscaffold_1G00064630 Rroxscaffold_2G00113040
rosa_rugosa	Rorug02G0296200 Rorug04G0460200
rosa_samantha	Rh2AG349500 Rh2BG356400 Rh2CG335300 Rh2DG374300 Rh5AG091800 Rh5BG087700 Rh5CG101500 Rh5DG088300
rosa_wichuraiana	Rw2G028360 Rw5G008020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	720
AccI	GTMKAC	1 cut(s)	277
AciI	CCGC	3 cut(s)	431, 720, 821
AclI	AACGTT	1 cut(s)	680
AclWI	GGATC	4 cut(s)	227, 396, 750, 910
AcsI	RAATTY	3 cut(s)	181, 248, 997
AfiI	CCNNNNNNNGG	2 cut(s)	430, 854
AgeI	ACCGGT	1 cut(s)	313
AgsI	TTSAA	6 cut(s)	24, 147, 172, 256, 490, 614
AjnI	CCWGG	2 cut(s)	562, 898
AluBI	AGCT	6 cut(s)	27, 117, 205, 472, 755, 1031
AluI	AGCT	6 cut(s)	27, 117, 205, 472, 755, 1031
Alw26I	GTCTC	1 cut(s)	144
AlwI	GGATC	4 cut(s)	227, 396, 750, 910
AoxI	GGCC	1 cut(s)	421
ApeKI	GCWGC	2 cut(s)	472, 752
ApoI	RAATTY	3 cut(s)	181, 248, 997
AsiGI	ACCGGT	1 cut(s)	313
Asp700I	GAANNNNTTC	1 cut(s)	423
AspLEI	GCGC	2 cut(s)	349, 841
AsuII	TTCGAA	1 cut(s)	223
BbvI	GCAGC	2 cut(s)	459, 764
BciT130I	CCWGG	2 cut(s)	564, 900
BcoDI	GTCTC	1 cut(s)	144
BisI	GCNGC	3 cut(s)	473, 753, 821
BlsI	GCNGC	3 cut(s)	474, 754, 822
Bme1390I	CCNGG	2 cut(s)	564, 900
BmrFI	CCNGG	2 cut(s)	564, 900
BmsI	GCATC	1 cut(s)	739
Bpu14I	TTCGAA	1 cut(s)	223
BpuEI	CTTGAG	1 cut(s)	172
BsaI	GGTCTC	1 cut(s)	144
BsaJI	CCNNGG	1 cut(s)	898
BsaWI	WCCGGW	1 cut(s)	313
Bsc4I	CCNNNNNNNGG	2 cut(s)	430, 854
Bse118I	RCCGGY	1 cut(s)	313
BseBI	CCWGG	2 cut(s)	564, 900
BseDI	CCNNGG	1 cut(s)	898
BseGI	GGATG	2 cut(s)	10, 195
BseLI	CCNNNNNNNGG	2 cut(s)	430, 854
BseMII	CTCAG	3 cut(s)	228, 747, 828
BseXI	GCAGC	2 cut(s)	459, 764
Bsh1285I	CGRYCG	1 cut(s)	90
BshFI	GGCC	1 cut(s)	423
BshTI	ACCGGT	1 cut(s)	313
BsiEI	CGRYCG	1 cut(s)	90
BsiSI	CCGG	1 cut(s)	314
BslI	CCNNNNNNNGG	2 cut(s)	430, 854
BsmAI	GTCTC	1 cut(s)	144
BsnI	GGCC	1 cut(s)	423
Bso31I	GGTCTC	1 cut(s)	144
Bsp119I	TTCGAA	1 cut(s)	223
Bsp143I	GATC	5 cut(s)	232, 388, 493, 742, 902
BspACI	CCGC	3 cut(s)	431, 720, 821
BspANI	GGCC	1 cut(s)	423
BspCNI	CTCAG	3 cut(s)	229, 748, 827
BspHI	TCATGA	1 cut(s)	745
BspPI	GGATC	4 cut(s)	227, 396, 750, 910
BspQI	GCTCTTC	1 cut(s)	710
BspT104I	TTCGAA	1 cut(s)	223
BspTNI	GGTCTC	1 cut(s)	144
BsrBI	CCGCTC	1 cut(s)	720
BsrFI	RCCGGY	1 cut(s)	313
BssAI	RCCGGY	1 cut(s)	313
BssECI	CCNNGG	1 cut(s)	898
BssMI	GATC	5 cut(s)	232, 388, 493, 742, 902
Bst2UI	CCWGG	2 cut(s)	564, 900
Bst4CI	ACNGT	1 cut(s)	832
Bst6I	CTCTTC	3 cut(s)	630, 710, 931
BstBI	TTCGAA	1 cut(s)	223
BstC8I	GCNNGC	1 cut(s)	843
BstDEI	CTNAG	4 cut(s)	237, 756, 767, 814
BstF5I	GGATG	2 cut(s)	10, 195
BstHHI	GCGC	2 cut(s)	349, 841
BstKTI	GATC	5 cut(s)	235, 391, 496, 745, 905
BstMAI	GTCTC	1 cut(s)	144
BstMBI	GATC	5 cut(s)	232, 388, 493, 742, 902
BstMCI	CGRYCG	1 cut(s)	90
BstMWI	GCNNNNNNNGC	1 cut(s)	717
BstNI	CCWGG	2 cut(s)	564, 900
BstSCI	CCNGG	2 cut(s)	562, 898
BstV1I	GCAGC	2 cut(s)	459, 764
BstX2I	RGATCY	1 cut(s)	232
BstYI	RGATCY	1 cut(s)	232
BsuRI	GGCC	1 cut(s)	423
BtsCI	GGATG	2 cut(s)	10, 195
Cac8I	GCNNGC	1 cut(s)	843
CciI	TCATGA	1 cut(s)	745
CfoI	GCGC	2 cut(s)	349, 841
Cfr10I	RCCGGY	1 cut(s)	313
CspAI	ACCGGT	1 cut(s)	313
CviAII	CATG	5 cut(s)	382, 590, 708, 739, 746
CviJI	RGCY	9 cut(s)	27, 117, 205, 324, 423, 472, 755, 820, 1031
CviKI_1	RGCY	9 cut(s)	27, 117, 205, 324, 423, 472, 755, 820, 1031
DdeI	CTNAG	4 cut(s)	237, 756, 767, 814
DpnI	GATC	5 cut(s)	234, 390, 495, 744, 904
DpnII	GATC	5 cut(s)	232, 388, 493, 742, 902
Eam1104I	CTCTTC	3 cut(s)	630, 710, 931
EarI	CTCTTC	3 cut(s)	630, 710, 931
Eco147I	AGGCCT	1 cut(s)	423
Eco31I	GGTCTC	1 cut(s)	144
EcoRI	GAATTC	2 cut(s)	248, 997
EcoRII	CCWGG	2 cut(s)	562, 898
FaeI	CATG	5 cut(s)	385, 593, 711, 742, 749
FalI	AAGNNNNNCTT	4 cut(s)	408, 440, 411, 443
FatI	CATG	5 cut(s)	381, 589, 707, 738, 745
FauNDI	CATATG	4 cut(s)	55, 214, 507, 538
FblI	GTMKAC	1 cut(s)	277
Fnu4HI	GCNGC	3 cut(s)	473, 753, 821
FokI	GGATG	2 cut(s)	17, 182
Fsp4HI	GCNGC	3 cut(s)	473, 753, 821
GlaI	GCGC	2 cut(s)	348, 840
GluI	GCNGC	3 cut(s)	473, 753, 821
HaeIII	GGCC	1 cut(s)	423
HapII	CCGG	1 cut(s)	314
HhaI	GCGC	2 cut(s)	349, 841
Hin1II	CATG	5 cut(s)	385, 593, 711, 742, 749
Hin6I	GCGC	2 cut(s)	347, 839
HinP1I	GCGC	2 cut(s)	347, 839
HincII	GTYRAC	2 cut(s)	278, 862
HindII	GTYRAC	2 cut(s)	278, 862
HindIII	AAGCTT	2 cut(s)	115, 1029
HpaI	GTTAAC	1 cut(s)	862
HpaII	CCGG	1 cut(s)	314
Hpy166II	GTNNAC	3 cut(s)	278, 641, 862
Hpy188I	TCNGA	8 cut(s)	82, 162, 370, 393, 522, 703, 817, 931
Hpy188III	TCNNGA	7 cut(s)	127, 147, 236, 253, 614, 746, 1035
Hpy8I	GTNNAC	3 cut(s)	278, 641, 862
HpyAV	CCTTC	3 cut(s)	164, 413, 434
HpyCH4III	ACNGT	1 cut(s)	832
HpyCH4IV	ACGT	2 cut(s)	680, 986
HpyCH4V	TGCA	3 cut(s)	475, 727, 752
HpyF10VI	GCNNNNNNNGC	1 cut(s)	717
HpyF3I	CTNAG	4 cut(s)	237, 756, 767, 814
HpySE526I	ACGT	2 cut(s)	680, 986
Hsp92II	CATG	5 cut(s)	385, 593, 711, 742, 749
HspAI	GCGC	2 cut(s)	347, 839
KspAI	GTTAAC	1 cut(s)	862
Kzo9I	GATC	5 cut(s)	232, 388, 493, 742, 902
LguI	GCTCTTC	1 cut(s)	710
LmnI	GCTCC	3 cut(s)	99, 378, 850
Lsp1109I	GCAGC	2 cut(s)	459, 764
LweI	GCATC	1 cut(s)	739
MaeII	ACGT	2 cut(s)	680, 986
MaeIII	GTNAC	5 cut(s)	435, 478, 498, 826, 832
MalI	GATC	5 cut(s)	234, 390, 495, 744, 904
MbiI	CCGCTC	1 cut(s)	720
MboI	GATC	5 cut(s)	232, 388, 493, 742, 902
MflI	RGATCY	1 cut(s)	232
MluCI	AATT	3 cut(s)	181, 248, 997
MlyI	GAGTC	2 cut(s)	77, 767
MnlI	CCTC	5 cut(s)	11, 266, 379, 590, 639
MroXI	GAANNNNTTC	1 cut(s)	423
MseI	TTAA	2 cut(s)	207, 861
MspA1I	CMGCKG	1 cut(s)	755
MspI	CCGG	1 cut(s)	314
MspR9I	CCNGG	2 cut(s)	564, 900
MvaI	CCWGG	2 cut(s)	564, 900
MwoI	GCNNNNNNNGC	1 cut(s)	717
NdeI	CATATG	4 cut(s)	55, 214, 507, 538
NdeII	GATC	5 cut(s)	232, 388, 493, 742, 902
NlaIII	CATG	5 cut(s)	385, 593, 711, 742, 749
NspV	TTCGAA	1 cut(s)	223
PagI	TCATGA	1 cut(s)	745
PceI	AGGCCT	1 cut(s)	423
PciSI	GCTCTTC	1 cut(s)	710
PdmI	GAANNNNTTC	1 cut(s)	423
PfeI	GAWTC	8 cut(s)	71, 130, 165, 337, 365, 668, 691, 704
PflFI	GACNNNGTC	1 cut(s)	86
PinAI	ACCGGT	1 cut(s)	313
PkrI	GCNGC	3 cut(s)	474, 754, 822
PleI	GAGTC	2 cut(s)	77, 766
PpsI	GAGTC	2 cut(s)	77, 766
Psp1406I	AACGTT	1 cut(s)	680
Psp6I	CCWGG	2 cut(s)	562, 898
PspGI	CCWGG	2 cut(s)	562, 898
PsuI	RGATCY	1 cut(s)	232
PsyI	GACNNNGTC	1 cut(s)	86
PvuII	CAGCTG	1 cut(s)	755
SalI	GTCGAC	1 cut(s)	276
SapI	GCTCTTC	1 cut(s)	710
SaqAI	TTAA	2 cut(s)	207, 861
SatI	GCNGC	3 cut(s)	473, 753, 821
Sau3AI	GATC	5 cut(s)	232, 388, 493, 742, 902
SchI	GAGTC	2 cut(s)	77, 767
ScrFI	CCNGG	2 cut(s)	564, 900
SfaNI	GCATC	1 cut(s)	739
SfuI	TTCGAA	1 cut(s)	223
SmlI	CTYRAG	1 cut(s)	187
SmoI	CTYRAG	1 cut(s)	187
Sse9I	AATT	3 cut(s)	181, 248, 997
SseBI	AGGCCT	1 cut(s)	423
SsiI	CCGC	3 cut(s)	431, 720, 821
StuI	AGGCCT	1 cut(s)	423
StyD4I	CCNGG	2 cut(s)	562, 898
TaaI	ACNGT	1 cut(s)	832
TaiI	ACGT	2 cut(s)	683, 989
TaqI	TCGA	5 cut(s)	223, 277, 582, 657, 797
TaqII	GACCGA	1 cut(s)	76
TasI	AATT	3 cut(s)	181, 248, 997
TauI	GCSGC	1 cut(s)	823
TfiI	GAWTC	8 cut(s)	71, 130, 165, 337, 365, 668, 691, 704
Tru1I	TTAA	2 cut(s)	207, 861
Tru9I	TTAA	2 cut(s)	207, 861
TseI	GCWGC	2 cut(s)	472, 752
TspDTI	ATGAA	8 cut(s)	21, 72, 109, 184, 290, 305, 308, 824
TspGWI	ACGGA	4 cut(s)	188, 377, 391, 472
Tth111I	GACNNNGTC	1 cut(s)	86
XapI	RAATTY	3 cut(s)	181, 248, 997
XmiI	GTMKAC	1 cut(s)	277
XmnI	GAANNNNTTC	1 cut(s)	423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.