Rroxscaffold_2G00113040

Heat Stress Transcription Factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0002221
Physical Location & Seq
Forward (+)
38547952 .. 38551435
3484 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00113040.1

Sequence Viewer

Length: 387 bp
ATGGGTCTCAAGGTGGTTCAGAATGCACCAGCTCCTTTTCTTTCGAAAACATATGACTTGGTGGATGATCCTTCAACCAACCATGTGGTGTCTTGGAGTGAAACTGGTTGTAGTTTTGTAGTTTGGGATCCCACAGAGTTTGCCAAGGATTTGCTTCCCATGTATTTCAAGCACAACAATTTTTCGAGTTTTGTCAGGCAGCTTAATACATATGGGTTTAGGAAGGTTGATCCTGAGCAGTGGGAGTTTGCAAATGAGGAATTCTTAAGAGGAGGAAGGAATCTACTGAAGAATATTCACCGCCGCAAGCCAATTCATAGTCACTCCATGCAAAATCACGAGTATTCTTCAGTTCCTTTAAAGCGAGAAAGAAAGAGAAGAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04212 ko05134 map04212 map05134
Pfam Domains
Protein Families
HSF_DNA-bind

Protein Analysis

128

Amino Acids

15.12

Weight (kDa)

9.52

Isoelectric Point (pI)

48.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSF_DNA-bind PF00447 13 - 102 1.3e-31 HSF-type DNA-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 301, 304
AclWI GGATC 4 cut(s) 62, 122, 135, 224
AcsI RAATTY 1 cut(s) 260
AcuI CTGAAG 2 cut(s) 308, 333
AflII CTTAAG 1 cut(s) 265
AgsI TTSAA 2 cut(s) 75, 169
AluBI AGCT 2 cut(s) 32, 202
AluI AGCT 2 cut(s) 32, 202
Alw26I GTCTC 1 cut(s) 11
AlwI GGATC 4 cut(s) 62, 122, 135, 224
ApeKI GCWGC 1 cut(s) 199
ApoI RAATTY 1 cut(s) 260
AsuHPI GGTGA 1 cut(s) 290
AsuII TTCGAA 1 cut(s) 44
BamHI GGATCC 1 cut(s) 127
BauI CACGAG 1 cut(s) 338
BbvI GCAGC 1 cut(s) 211
BcoDI GTCTC 1 cut(s) 11
BfrI CTTAAG 1 cut(s) 265
BisI GCNGC 2 cut(s) 200, 304
BlsI GCNGC 2 cut(s) 201, 305
BmiI GGNNCC 1 cut(s) 129
Bpu10I CCTNAGC 1 cut(s) 234
Bpu14I TTCGAA 1 cut(s) 44
BsaI GGTCTC 1 cut(s) 11
BsaJI CCNNGG 1 cut(s) 144
Bse1I ACTGG 1 cut(s) 109
BseDI CCNNGG 1 cut(s) 144
BseGI GGATG 1 cut(s) 70
BseMII CTCAG 1 cut(s) 225
BseNI ACTGG 1 cut(s) 109
BseRI GAGGAG 1 cut(s) 285
BseXI GCAGC 1 cut(s) 211
BsmAI GTCTC 1 cut(s) 11
BsmI GAATGC 1 cut(s) 28
Bso31I GGTCTC 1 cut(s) 11
Bsp119I TTCGAA 1 cut(s) 44
Bsp143I GATC 3 cut(s) 67, 127, 229
BspACI CCGC 2 cut(s) 301, 304
BspCNI CTCAG 1 cut(s) 226
BspLI GGNNCC 1 cut(s) 129
BspPI GGATC 4 cut(s) 62, 122, 135, 224
BspT104I TTCGAA 1 cut(s) 44
BspTI CTTAAG 1 cut(s) 265
BspTNI GGTCTC 1 cut(s) 11
BsrI ACTGG 1 cut(s) 109
BssECI CCNNGG 1 cut(s) 144
BssMI GATC 3 cut(s) 67, 127, 229
BssSI CACGAG 1 cut(s) 338
BssT1I CCWWGG 1 cut(s) 144
Bst2BI CACGAG 1 cut(s) 338
BstAFI CTTAAG 1 cut(s) 265
BstBI TTCGAA 1 cut(s) 44
BstC8I GCNNGC 1 cut(s) 308
BstDEI CTNAG 1 cut(s) 234
BstF5I GGATG 1 cut(s) 70
BstKTI GATC 3 cut(s) 70, 130, 232
BstMAI GTCTC 1 cut(s) 11
BstMBI GATC 3 cut(s) 67, 127, 229
BstV1I GCAGC 1 cut(s) 211
BstX2I RGATCY 1 cut(s) 127
BstXI CCANNNNNNTGG 1 cut(s) 85
BstYI RGATCY 1 cut(s) 127
BtsCI GGATG 1 cut(s) 70
BtsI GCAGTG 1 cut(s) 245
BtsIMutI CAGTG 1 cut(s) 245
Cac8I GCNNGC 1 cut(s) 308
CspCI CAANNNNNGTGG 2 cut(s) 121, 156
CviAII CATG 3 cut(s) 83, 160, 328
CviJI RGCY 3 cut(s) 32, 202, 310
CviKI_1 RGCY 3 cut(s) 32, 202, 310
DdeI CTNAG 1 cut(s) 234
DpnI GATC 3 cut(s) 69, 129, 231
DpnII GATC 3 cut(s) 67, 127, 229
DraI TTTAAA 1 cut(s) 360
Eco130I CCWWGG 1 cut(s) 144
Eco31I GGTCTC 1 cut(s) 11
Eco57I CTGAAG 2 cut(s) 308, 333
EcoRI GAATTC 1 cut(s) 260
EcoT14I CCWWGG 1 cut(s) 144
ErhI CCWWGG 1 cut(s) 144
FaeI CATG 3 cut(s) 86, 163, 331
FaiI YATR 9 cut(s) 52, 54, 84, 161, 211, 213, 318, 329, 385
FatI CATG 3 cut(s) 82, 159, 327
FauNDI CATATG 2 cut(s) 52, 211
Fnu4HI GCNGC 2 cut(s) 200, 304
FokI GGATG 1 cut(s) 77
Fsp4HI GCNGC 2 cut(s) 200, 304
GluI GCNGC 2 cut(s) 200, 304
Hin1II CATG 3 cut(s) 86, 163, 331
HinfI GANTC 1 cut(s) 280
HphI GGTGA 1 cut(s) 290
Hpy188I TCNGA 1 cut(s) 21
Hpy188III TCNNGA 2 cut(s) 233, 338
HpyAV CCTTC 3 cut(s) 81, 217, 270
HpyCH4V TGCA 3 cut(s) 26, 251, 331
HpyF3I CTNAG 1 cut(s) 234
Hsp92II CATG 3 cut(s) 86, 163, 331
Kzo9I GATC 3 cut(s) 67, 127, 229
LmnI GCTCC 1 cut(s) 37
LpnPI CCDG 4 cut(s) 42, 90, 181, 246
Lsp1109I GCAGC 1 cut(s) 211
MaeIII GTNAC 1 cut(s) 320
MalI GATC 3 cut(s) 69, 129, 231
MboI GATC 3 cut(s) 67, 127, 229
MboII GAAGA 2 cut(s) 301, 339
MflI RGATCY 1 cut(s) 127
MluCI AATT 3 cut(s) 178, 260, 312
MnlI CCTC 3 cut(s) 250, 263, 266
MseI TTAA 3 cut(s) 204, 266, 359
MspCI CTTAAG 1 cut(s) 265
Mva1269I GAATGC 1 cut(s) 28
NdeI CATATG 2 cut(s) 52, 211
NdeII GATC 3 cut(s) 67, 127, 229
NlaIII CATG 3 cut(s) 86, 163, 331
NlaIV GGNNCC 1 cut(s) 129
NmuCI GTSAC 1 cut(s) 320
NspV TTCGAA 1 cut(s) 44
PctI GAATGC 1 cut(s) 28
PfeI GAWTC 1 cut(s) 280
PkrI GCNGC 2 cut(s) 201, 305
PspN4I GGNNCC 1 cut(s) 129
PsuI RGATCY 1 cut(s) 127
SaqAI TTAA 3 cut(s) 204, 266, 359
SatI GCNGC 2 cut(s) 200, 304
Sau3AI GATC 3 cut(s) 67, 127, 229
SetI ASST 4 cut(s) 15, 34, 204, 228
SfuI TTCGAA 1 cut(s) 44
SmlI CTYRAG 2 cut(s) 8, 265
SmoI CTYRAG 2 cut(s) 8, 265
Sse9I AATT 3 cut(s) 178, 260, 312
SsiI CCGC 2 cut(s) 301, 304
SspI AATATT 1 cut(s) 295
StyI CCWWGG 1 cut(s) 144
TaqI TCGA 2 cut(s) 44, 185
TasI AATT 3 cut(s) 178, 260, 312
TauI GCSGC 1 cut(s) 306
TfiI GAWTC 1 cut(s) 280
Tru1I TTAA 3 cut(s) 204, 266, 359
Tru9I TTAA 3 cut(s) 204, 266, 359
TscAI CASTG 1 cut(s) 245
TseFI GTSAC 1 cut(s) 320
TseI GCWGC 1 cut(s) 199
Tsp45I GTSAC 1 cut(s) 320
TspDTI ATGAA 1 cut(s) 305
TspRI CASTG 1 cut(s) 245
Vha464I CTTAAG 1 cut(s) 265
XapI RAATTY 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.