AT4G19720

Contains the following InterPro domains Glycoside hydrolase, family 18, catalytic domain (InterPro IPR001223), Chitinase II (InterPro IPR011583), Glycoside hydrolase, catalytic core (InterPro IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro IPR013781)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0004690
Physical Location & Seq
Reverse (-)
10729966 .. 10731808
1843 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G19720.1

Sequence Viewer

Length: 1092 bp
ATGTATACGGAAGTAGTTAAAGCATCCTATTGGTTCCCAGATGGTGCATCATCCCCAACCACCGGAAGCGTAGTCCCACAATCCTCAGCCGTGCTAATCGATTCAACTCTCTTCACTCATCTTTTCTGCGCCTTTGCCGACCTTGACCCTCAGACCAACAGCGTCGTTGTCTCCGGCGCTCACGAACAAGAATTCTCCAACTTCACTAAAATCGTCAAGAAGAAAAACCCTCACGTGCAAACCCTCTTGTCCATCGGCGGAAGAAACGCAGATAAATCCGCGTTTGCGTCTATGGCAAGTAACCCCACTTCTCGTAAATCCTTCATTTGGTCTGCGATCTCCAGCGCTAGATACTATCGATTTGACGGACTTGATCTGGTTTGGAAGTACCCAAAAGATGATGTGGAGATGAGAAACTTTGGTCAACTACTTGAACAATGGCGAGAAGCGATTGAGGACGATGCTGAACGCACCGAAAGAATGCCTTTGCTATTGACGGCTGCGGTTTACTACTCTCCGGTTTACGATTCTGTTTCCTACCCAATTCGGGAGATTAAAAAAAAATTGGATTGGGTTAACCTTATTGCCTATGATTTCTACTCTTCATCCACAACCATTGGTCCACCCGCCGCTCTGTTTGATCCCTCAAACCCGAAAGGTCCATGTGGGGACTATGGTTTGAAAGAGTGGATTAAGGCCGGACTTCCGGCGAAGAAAGCAGTCTTGGGATTTCCATACGTTGGATGGACCTGGAGTCTAGGAAGCGGCAATGATGCGGCCACCAGCCGAGTAGCTACATCAGCTGAGGGTTCTATCAACTACGATCAGATAAAAAGGTTAATAGTGGATCACAAAGCAAGACCGGTTTTTGACTCGACGGTGGTTGGAGATTACTGCTTTGCCGGGACGAGTTTGATTGGGTACGATGATCATCAGAGCGTCGTGGCTAAAGTAAAATACGCTAAACAGAAAGGTTTGCTTGGTTACTTCTCATGGCATGTTGGAGCTGATGATAATTTTGGCCTATCTCGTGCAGCATCGCAAGCATGGGATGCTAAAGAGACAAAGACAACCAGCGGAGACAACCACTAA

Protein Analysis

363

Amino Acids

40.08

Weight (kDa)

6.39

Isoelectric Point (pI)

32.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_18 PF00704 28 - 337 1.2e-69 Glycosyl hydrolases family 18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 740
AccBSI CCGCTC 1 cut(s) 632
AccI GTMKAC 1 cut(s) 5
AccII CGCG 1 cut(s) 281
AciI CCGC 8 cut(s) 258, 279, 503, 627, 630, 765, 776, 1077
AclWI GGATC 2 cut(s) 635, 855
AcoI YGGCCR 1 cut(s) 777
AcsI RAATTY 1 cut(s) 191
AcvI CACGTG 1 cut(s) 235
AfaI GTAC 2 cut(s) 389, 923
AfeI AGCGCT 1 cut(s) 346
AfiI CCNNNNNNNGG 4 cut(s) 62, 327, 547, 740
AgeI ACCGGT 1 cut(s) 862
AgsI TTSAA 3 cut(s) 105, 434, 682
AhdI GACNNNNNGTC 1 cut(s) 753
AjnI CCWGG 1 cut(s) 749
AjuI GAANNNNNNNTTGG 2 cut(s) 707, 739
AluBI AGCT 3 cut(s) 794, 803, 1007
AluI AGCT 3 cut(s) 794, 803, 1007
Alw26I GTCTC 3 cut(s) 175, 1055, 1074
AlwI GGATC 2 cut(s) 635, 855
Aor51HI AGCGCT 1 cut(s) 346
AoxI GGCC 3 cut(s) 696, 777, 1021
ApeKI GCWGC 2 cut(s) 500, 1034
ApoI RAATTY 1 cut(s) 191
AsiGI ACCGGT 1 cut(s) 862
AspLEI GCGC 3 cut(s) 131, 179, 347
AspS9I GGNCC 3 cut(s) 620, 659, 747
AsuC2I CCSGG 1 cut(s) 904
AvaII GGWCC 3 cut(s) 620, 659, 747
BarI GAAGNNNNNNTAC 2 cut(s) 292, 324
BauI CACGAG 1 cut(s) 1029
BbrPI CACGTG 1 cut(s) 235
BbvCI CCTCAGC 2 cut(s) 85, 804
BbvI GCAGC 2 cut(s) 487, 1046
BccI CCATC 3 cut(s) 35, 260, 738
BceAI ACGGC 2 cut(s) 74, 513
BciT130I CCWGG 1 cut(s) 751
BclI TGATCA 1 cut(s) 928
BcnI CCSGG 1 cut(s) 904
BcoDI GTCTC 3 cut(s) 175, 1055, 1074
BfaI CTAG 2 cut(s) 348, 758
BfoI RGCGCY 2 cut(s) 180, 348
BisI GCNGC 5 cut(s) 501, 630, 766, 777, 1035
BlsI GCNGC 5 cut(s) 502, 631, 767, 778, 1036
Bme1390I CCNGG 2 cut(s) 751, 904
Bme18I GGWCC 3 cut(s) 620, 659, 747
BmeRI GACNNNNNGTC 1 cut(s) 753
BmgT120I GGNCC 3 cut(s) 620, 659, 747
BmiI GGNNCC 1 cut(s) 35
BmrFI CCNGG 2 cut(s) 751, 904
BmsI GCATC 6 cut(s) 32, 56, 451, 763, 1042, 1046
BpmI CTGGAG 2 cut(s) 325, 772
Bpu10I CCTNAGC 2 cut(s) 85, 804
BpuMI CCSGG 1 cut(s) 904
Bsa29I ATCGAT 2 cut(s) 99, 358
BsaAI YACGTR 1 cut(s) 235
BsaBI GATNNNNATC 1 cut(s) 930
BsaWI WCCGGW 3 cut(s) 62, 517, 862
Bsc4I CCNNNNNNNGG 4 cut(s) 62, 327, 547, 740
Bse118I RCCGGY 1 cut(s) 862
Bse3DI GCAATG 1 cut(s) 775
Bse8I GATNNNNATC 1 cut(s) 930
BseBI CCWGG 1 cut(s) 751
BseCI ATCGAT 2 cut(s) 99, 358
BseGI GGATG 5 cut(s) 23, 50, 605, 749, 1057
BseJI GATNNNNATC 1 cut(s) 930
BseLI CCNNNNNNNGG 4 cut(s) 62, 327, 547, 740
BseMI GCAATG 1 cut(s) 775
BseMII CTCAG 3 cut(s) 99, 164, 795
BseXI GCAGC 2 cut(s) 487, 1046
BsgI GTGCAG 1 cut(s) 1053
Bsh1236I CGCG 1 cut(s) 281
BshFI GGCC 3 cut(s) 698, 779, 1023
BshTI ACCGGT 1 cut(s) 862
BshVI ATCGAT 2 cut(s) 99, 358
BsiSI CCGG 7 cut(s) 63, 174, 518, 699, 707, 863, 903
BslFI GGGAC 3 cut(s) 59, 683, 919
BslI CCNNNNNNNGG 4 cut(s) 62, 327, 547, 740
BsmAI GTCTC 3 cut(s) 175, 1055, 1074
BsmFI GGGAC 3 cut(s) 59, 683, 919
BsmI GAATGC 1 cut(s) 486
BsnI GGCC 3 cut(s) 698, 779, 1023
Bsp143I GATC 6 cut(s) 336, 373, 640, 823, 847, 928
BspACI CCGC 8 cut(s) 258, 279, 503, 627, 630, 765, 776, 1077
BspANI GGCC 3 cut(s) 698, 779, 1023
BspCNI CTCAG 3 cut(s) 98, 163, 796
BspDI ATCGAT 2 cut(s) 99, 358
BspFNI CGCG 1 cut(s) 281
BspLI GGNNCC 1 cut(s) 35
BspPI GGATC 2 cut(s) 635, 855
BsrBI CCGCTC 1 cut(s) 632
BsrDI GCAATG 1 cut(s) 775
BsrFI RCCGGY 1 cut(s) 862
BssAI RCCGGY 1 cut(s) 862
BssMI GATC 6 cut(s) 336, 373, 640, 823, 847, 928
BssNAI GTATAC 1 cut(s) 6
BssSI CACGAG 1 cut(s) 1029
Bst1107I GTATAC 1 cut(s) 6
Bst2BI CACGAG 1 cut(s) 1029
Bst2UI CCWGG 1 cut(s) 751
Bst4CI ACNGT 1 cut(s) 880
Bst6I CTCTTC 2 cut(s) 116, 607
BstAPI GCANNNNNTGC 1 cut(s) 1052
BstBAI YACGTR 1 cut(s) 235
BstC8I GCNNGC 1 cut(s) 1044
BstDEI CTNAG 3 cut(s) 85, 150, 804
BstF5I GGATG 5 cut(s) 23, 50, 605, 749, 1057
BstFNI CGCG 1 cut(s) 281
BstH2I RGCGCY 2 cut(s) 180, 348
BstHHI GCGC 3 cut(s) 131, 179, 347
BstKTI GATC 6 cut(s) 339, 376, 643, 826, 850, 931
BstMAI GTCTC 3 cut(s) 175, 1055, 1074
BstMBI GATC 6 cut(s) 336, 373, 640, 823, 847, 928
BstMWI GCNNNNNNNGC 5 cut(s) 293, 716, 800, 1043, 1052
BstNI CCWGG 1 cut(s) 751
BstNSI RCATGY 1 cut(s) 1001
BstSCI CCNGG 2 cut(s) 749, 902
BstUI CGCG 1 cut(s) 281
BstV1I GCAGC 2 cut(s) 487, 1046
BstZ17I GTATAC 1 cut(s) 6
Bsu15I ATCGAT 2 cut(s) 99, 358
BsuRI GGCC 3 cut(s) 698, 779, 1023
BsuTUI ATCGAT 2 cut(s) 99, 358
BtgZI GCGATG 1 cut(s) 1023
BtsCI GGATG 5 cut(s) 23, 50, 605, 749, 1057
Cac8I GCNNGC 1 cut(s) 1044
CfoI GCGC 3 cut(s) 131, 179, 347
Cfr10I RCCGGY 1 cut(s) 862
Cfr13I GGNCC 3 cut(s) 620, 659, 747
ClaI ATCGAT 2 cut(s) 99, 358
CseI GACGC 3 cut(s) 151, 276, 928
Csp6I GTAC 2 cut(s) 388, 922
CspAI ACCGGT 1 cut(s) 862
CspCI CAANNNNNGTGG 2 cut(s) 598, 633
CviAII CATG 4 cut(s) 663, 993, 998, 1047
CviQI GTAC 2 cut(s) 388, 922
DdeI CTNAG 3 cut(s) 85, 150, 804
DpnI GATC 6 cut(s) 338, 375, 642, 825, 849, 930
DpnII GATC 6 cut(s) 336, 373, 640, 823, 847, 928
DriI GACNNNNNGTC 1 cut(s) 753
EaeI YGGCCR 1 cut(s) 777
Eam1104I CTCTTC 2 cut(s) 116, 607
Eam1105I GACNNNNNGTC 1 cut(s) 753
EarI CTCTTC 2 cut(s) 116, 607
EciI GGCGGA 1 cut(s) 273
Eco47I GGWCC 3 cut(s) 620, 659, 747
Eco47III AGCGCT 1 cut(s) 346
Eco72I CACGTG 1 cut(s) 235
EcoRI GAATTC 1 cut(s) 191
EcoRII CCWGG 1 cut(s) 749
FaeI CATG 4 cut(s) 666, 996, 1001, 1050
FaiI YATR 9 cut(s) 6, 293, 591, 664, 675, 736, 994, 999, 1048
FalI AAGNNNNNCTT 4 cut(s) 469, 501, 963, 995
FaqI GGGAC 3 cut(s) 59, 683, 919
FatI CATG 4 cut(s) 662, 992, 997, 1046
FauI CCCGC 1 cut(s) 634
FbaI TGATCA 1 cut(s) 928
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 5 cut(s) 501, 630, 766, 777, 1035
FokI GGATG 5 cut(s) 10, 37, 592, 756, 1064
Fsp4HI GCNGC 5 cut(s) 501, 630, 766, 777, 1035
FspBI CTAG 2 cut(s) 348, 758
GlaI GCGC 3 cut(s) 130, 178, 346
GluI GCNGC 5 cut(s) 501, 630, 766, 777, 1035
GsuI CTGGAG 2 cut(s) 325, 772
HaeII RGCGCY 2 cut(s) 180, 348
HaeIII GGCC 3 cut(s) 698, 779, 1023
HapII CCGG 7 cut(s) 63, 174, 518, 699, 707, 863, 903
HgaI GACGC 3 cut(s) 151, 276, 928
HhaI GCGC 3 cut(s) 131, 179, 347
Hin1II CATG 4 cut(s) 666, 996, 1001, 1050
Hin6I GCGC 3 cut(s) 129, 177, 345
HinP1I GCGC 3 cut(s) 129, 177, 345
HincII GTYRAC 2 cut(s) 425, 577
HindII GTYRAC 2 cut(s) 425, 577
HinfI GANTC 4 cut(s) 101, 527, 754, 872
HpaI GTTAAC 1 cut(s) 577
HpaII CCGG 7 cut(s) 63, 174, 518, 699, 707, 863, 903
Hpy166II GTNNAC 6 cut(s) 6, 425, 508, 523, 577, 623
Hpy188I TCNGA 3 cut(s) 153, 828, 936
Hpy188III TCNNGA 3 cut(s) 182, 217, 548
Hpy8I GTNNAC 6 cut(s) 6, 425, 508, 523, 577, 623
Hpy99I CGWCG 3 cut(s) 167, 880, 944
HpyAV CCTTC 1 cut(s) 331
HpyCH4III ACNGT 1 cut(s) 880
HpyCH4IV ACGT 2 cut(s) 234, 738
HpyCH4V TGCA 3 cut(s) 47, 238, 1034
HpyF10VI GCNNNNNNNGC 5 cut(s) 293, 716, 800, 1043, 1052
HpyF3I CTNAG 3 cut(s) 85, 150, 804
HpySE526I ACGT 2 cut(s) 234, 738
Hsp92II CATG 4 cut(s) 666, 996, 1001, 1050
HspAI GCGC 3 cut(s) 129, 177, 345
Ksp22I TGATCA 1 cut(s) 928
KspAI GTTAAC 1 cut(s) 577
Kzo9I GATC 6 cut(s) 336, 373, 640, 823, 847, 928
LmnI GCTCC 1 cut(s) 1004
Lsp1109I GCAGC 2 cut(s) 487, 1046
LweI GCATC 6 cut(s) 32, 56, 451, 763, 1042, 1046
MaeI CTAG 2 cut(s) 348, 758
MaeII ACGT 2 cut(s) 234, 738
MaeIII GTNAC 2 cut(s) 299, 983
MalI GATC 6 cut(s) 338, 375, 642, 825, 849, 930
MbiI CCGCTC 1 cut(s) 632
MboI GATC 6 cut(s) 336, 373, 640, 823, 847, 928
MboII GAAGA 5 cut(s) 103, 232, 273, 594, 724
MluCI AATT 4 cut(s) 191, 543, 563, 1015
MlyI GAGTC 2 cut(s) 763, 866
MmeI TCCRAC 4 cut(s) 222, 721, 865, 982
MnlI CCTC 7 cut(s) 94, 159, 240, 254, 448, 655, 799
MseI TTAA 5 cut(s) 18, 555, 576, 693, 839
MspA1I CMGCKG 2 cut(s) 803, 1077
MspI CCGG 7 cut(s) 63, 174, 518, 699, 707, 863, 903
MspR9I CCNGG 2 cut(s) 751, 904
Mva1269I GAATGC 1 cut(s) 486
MvaI CCWGG 1 cut(s) 751
MvnI CGCG 1 cut(s) 281
MwoI GCNNNNNNNGC 5 cut(s) 293, 716, 800, 1043, 1052
NciI CCSGG 1 cut(s) 904
NdeII GATC 6 cut(s) 336, 373, 640, 823, 847, 928
NlaIII CATG 4 cut(s) 666, 996, 1001, 1050
NlaIV GGNNCC 1 cut(s) 35
NmeAIII GCCGAG 1 cut(s) 812
NspI RCATGY 1 cut(s) 1001
PctI GAATGC 1 cut(s) 486
PfeI GAWTC 2 cut(s) 101, 527
PflMI CCANNNNNTGG 1 cut(s) 740
PinAI ACCGGT 1 cut(s) 862
PkrI GCNGC 5 cut(s) 502, 631, 767, 778, 1036
PleI GAGTC 2 cut(s) 762, 866
PmaCI CACGTG 1 cut(s) 235
PmlI CACGTG 1 cut(s) 235
PpsI GAGTC 2 cut(s) 762, 866
Ppu21I YACGTR 1 cut(s) 235
Psp6I CCWGG 1 cut(s) 749
PspCI CACGTG 1 cut(s) 235
PspGI CCWGG 1 cut(s) 749
PspN4I GGNNCC 1 cut(s) 35
PspPI GGNCC 3 cut(s) 620, 659, 747
PvuII CAGCTG 1 cut(s) 803
RsaI GTAC 2 cut(s) 389, 923
RsaNI GTAC 2 cut(s) 388, 922
SaqAI TTAA 5 cut(s) 18, 555, 576, 693, 839
SatI GCNGC 5 cut(s) 501, 630, 766, 777, 1035
Sau3AI GATC 6 cut(s) 336, 373, 640, 823, 847, 928
Sau96I GGNCC 3 cut(s) 620, 659, 747
SchI GAGTC 2 cut(s) 763, 866
ScrFI CCNGG 2 cut(s) 751, 904
SfaNI GCATC 6 cut(s) 32, 56, 451, 763, 1042, 1046
SinI GGWCC 3 cut(s) 620, 659, 747
Sse9I AATT 4 cut(s) 191, 543, 563, 1015
SsiI CCGC 8 cut(s) 258, 279, 503, 627, 630, 765, 776, 1077
SspMI CTAG 2 cut(s) 348, 758
StyD4I CCNGG 2 cut(s) 749, 902
TaaI ACNGT 1 cut(s) 880
TaiI ACGT 2 cut(s) 237, 741
TaqI TCGA 3 cut(s) 99, 358, 875
TasI AATT 4 cut(s) 191, 543, 563, 1015
TauI GCSGC 3 cut(s) 632, 768, 779
TfiI GAWTC 2 cut(s) 101, 527
Tru1I TTAA 5 cut(s) 18, 555, 576, 693, 839
Tru9I TTAA 5 cut(s) 18, 555, 576, 693, 839
TseI GCWGC 2 cut(s) 500, 1034
TspDTI ATGAA 2 cut(s) 313, 594
TspGWI ACGGA 2 cut(s) 23, 381
Van91I CCANNNNNTGG 1 cut(s) 740
VpaK11BI GGWCC 3 cut(s) 620, 659, 747
XapI RAATTY 1 cut(s) 191
XceI RCATGY 1 cut(s) 1001
XcmI CCANNNNNNNNNTGG 1 cut(s) 741
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 2 cut(s) 348, 758
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.