Rmu_sc0004948.1_g000021

Glyco_18

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004948.1
Physical Location & Seq
Forward (+)
61695 .. 65475
3781 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004948.1_g000021.1.cds

Sequence Viewer

Length: 822 bp
atggcggtccaaggtggccagcgagtccagcacctcgtgcaagatcgccttgctgctgaccgctgcagtcttccgcatctcatcaacggagatgccggaatcgtgtcatggatcaacgacgccggaatctcaaccaagaagatagctattggtcttccgttttacgggttcgcttggaaatggttaaaccctaacaaccatggatttttcgctcaggctgatcgctcgggtatcggggctgaagaccagcgctacaaccggaataggaggcgtatcatacacgctgtctccaccgtcgcggcttccatcccttgctctagtcccaccgcttccggcgcgacttccagttttccttgcctccatcgcttccgtcgcggttccagctcaccatctacattcccacccaacgccgcccactggttcaaagcatcgacgtcggcgatccagtctgccctattcctgccggaccgccttcgtcttctccaggccctcttctctagtcgctcacctgcagcccatctcagaccggtctcagccctaacacagcaacacccctgcttgctcgtccgtaccggcctcgtccagacctacatgtgccccatgttggcgctctccacagtcacagccaccatctctcgacgtctccagatcaccgtcccgaactatacaacatcaagggacctcagctcctcagatcaccggcgatctcagcgacaacctccggtattctcagccacctcagcgatgacctacacgccagacgaaatcagacccagaccgcctgcaacctgctacaccttggccacgtcactcagcaactag

Protein Analysis

273

Amino Acids

29.9

Weight (kDa)

10.8

Isoelectric Point (pI)

56.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 517
AatII GACGTC 2 cut(s) 437, 643
Acc36I ACCTGC 2 cut(s) 517, 797
AccII CGCG 3 cut(s) 299, 338, 375
AciI CCGC 9 cut(s) 5, 61, 74, 299, 327, 375, 411, 469, 779
AclWI GGATC 2 cut(s) 119, 436
AcoI YGGCCR 2 cut(s) 16, 801
AcuI CTGAAG 1 cut(s) 261
AcyI GRCGYC 3 cut(s) 120, 434, 640
AdeI CACNNNGTG 1 cut(s) 37
AfaI GTAC 1 cut(s) 571
AfeI AGCGCT 1 cut(s) 251
AfiI CCNNNNNNNGG 3 cut(s) 164, 417, 604
AflIII ACRYGT 1 cut(s) 591
AgeI ACCGGT 1 cut(s) 526
AgsI TTSAA 1 cut(s) 424
AjiI CACGTC 1 cut(s) 807
AjnI CCWGG 1 cut(s) 483
AluBI AGCT 3 cut(s) 146, 384, 687
AluI AGCT 3 cut(s) 146, 384, 687
Alw26I GTCTC 3 cut(s) 292, 535, 647
AlwI GGATC 2 cut(s) 119, 436
Ama87I CYCGRG 1 cut(s) 226
Aor51HI AGCGCT 1 cut(s) 251
AoxI GGCC 4 cut(s) 16, 486, 574, 801
ApeKI GCWGC 3 cut(s) 53, 63, 512
AsiGI ACCGGT 1 cut(s) 526
AspLEI GCGC 3 cut(s) 252, 338, 610
AspS9I GGNCC 4 cut(s) 7, 466, 487, 679
AsuHPI GGTGA 4 cut(s) 378, 498, 643, 689
AvaI CYCGRG 1 cut(s) 226
AvaII GGWCC 3 cut(s) 7, 466, 679
BaeGI GKGCMC 1 cut(s) 599
BalI TGGCCA 2 cut(s) 18, 803
BauI CACGAG 1 cut(s) 35
BbsI GAAGAC 4 cut(s) 62, 146, 249, 470
BbvCI CCTCAGC 2 cut(s) 683, 739
BbvI GCAGC 3 cut(s) 40, 50, 524
BccI CCATC 5 cut(s) 314, 369, 397, 525, 638
BcgI CGANNNNNNTGC 2 cut(s) 417, 451
BciT130I CCWGG 1 cut(s) 485
BcoDI GTCTC 3 cut(s) 292, 535, 647
BfaI CTAG 3 cut(s) 318, 498, 820
BfmI CTRYAG 2 cut(s) 64, 510
BfoI RGCGCY 2 cut(s) 253, 611
BfuAI ACCTGC 2 cut(s) 517, 797
BisI GCNGC 5 cut(s) 54, 64, 300, 411, 513
BlsI GCNGC 5 cut(s) 55, 65, 301, 412, 514
Bme1390I CCNGG 1 cut(s) 485
Bme18I GGWCC 3 cut(s) 7, 466, 679
BmeT110I CYCGRG 1 cut(s) 226
BmgBI CACGTC 1 cut(s) 807
BmgT120I GGNCC 4 cut(s) 7, 466, 487, 679
BmiI GGNNCC 2 cut(s) 379, 680
BmrFI CCNGG 1 cut(s) 485
BmsI GCATC 3 cut(s) 82, 85, 437
BpiI GAAGAC 4 cut(s) 62, 146, 249, 470
BpmI CTGGAG 2 cut(s) 467, 629
Bpu10I CCTNAGC 3 cut(s) 213, 683, 739
BsaHI GRCGYC 3 cut(s) 120, 434, 640
BsaI GGTCTC 1 cut(s) 535
BsaJI CCNNGG 3 cut(s) 10, 199, 798
BsaWI WCCGGW 3 cut(s) 258, 526, 721
BsaXI ACNNNNNCTCC 4 cut(s) 272, 302, 671, 701
Bsc4I CCNNNNNNNGG 3 cut(s) 164, 417, 604
Bse118I RCCGGY 3 cut(s) 526, 572, 699
Bse1I ACTGG 3 cut(s) 345, 422, 445
BseBI CCWGG 1 cut(s) 485
BseDI CCNNGG 3 cut(s) 10, 199, 798
BseGI GGATG 1 cut(s) 306
BseLI CCNNNNNNNGG 3 cut(s) 164, 417, 604
BseMII CTCAG 8 cut(s) 227, 535, 546, 697, 705, 722, 744, 753
BseNI ACTGG 3 cut(s) 345, 422, 445
BseRI GAGGAG 1 cut(s) 679
BseSI GKGCMC 1 cut(s) 599
BseXI GCAGC 3 cut(s) 40, 50, 524
Bsh1236I CGCG 3 cut(s) 299, 338, 375
BshFI GGCC 4 cut(s) 18, 488, 576, 803
BshTI ACCGGT 1 cut(s) 526
BsiHKCI CYCGRG 1 cut(s) 226
BsiSI CCGG 9 cut(s) 96, 123, 259, 333, 464, 527, 573, 700, 722
BslFI GGGAC 3 cut(s) 306, 641, 692
BslI CCNNNNNNNGG 3 cut(s) 164, 417, 604
BsmAI GTCTC 3 cut(s) 292, 535, 647
BsmBI CGTCTC 1 cut(s) 647
BsmFI GGGAC 3 cut(s) 306, 641, 692
BsnI GGCC 4 cut(s) 18, 488, 576, 803
Bso31I GGTCTC 1 cut(s) 535
BsoBI CYCGRG 1 cut(s) 226
Bsp1286I GDGCHC 1 cut(s) 599
Bsp143I GATC 7 cut(s) 43, 111, 220, 441, 648, 694, 704
Bsp19I CCATGG 1 cut(s) 199
BspACI CCGC 9 cut(s) 5, 61, 74, 299, 327, 375, 411, 469, 779
BspANI GGCC 4 cut(s) 18, 488, 576, 803
BspCNI CTCAG 8 cut(s) 226, 534, 545, 696, 704, 721, 743, 752
BspFNI CGCG 3 cut(s) 299, 338, 375
BspLI GGNNCC 2 cut(s) 379, 680
BspMAI CTGCAG 2 cut(s) 68, 514
BspMI ACCTGC 2 cut(s) 517, 797
BspPI GGATC 2 cut(s) 119, 436
BspTNI GGTCTC 1 cut(s) 535
BsrFI RCCGGY 3 cut(s) 526, 572, 699
BsrI ACTGG 3 cut(s) 345, 422, 445
BssAI RCCGGY 3 cut(s) 526, 572, 699
BssECI CCNNGG 3 cut(s) 10, 199, 798
BssMI GATC 7 cut(s) 43, 111, 220, 441, 648, 694, 704
BssNI GRCGYC 3 cut(s) 120, 434, 640
BssSI CACGAG 1 cut(s) 35
BssT1I CCWWGG 3 cut(s) 10, 199, 798
Bst2BI CACGAG 1 cut(s) 35
Bst2UI CCWGG 1 cut(s) 485
Bst4CI ACNGT 3 cut(s) 295, 619, 655
Bst6I CTCTTC 1 cut(s) 497
BstACI GRCGYC 3 cut(s) 120, 434, 640
BstAPI GCANNNNNTGC 1 cut(s) 37
BstC8I GCNNGC 3 cut(s) 20, 560, 783
BstDEI CTNAG 9 cut(s) 213, 521, 532, 683, 691, 708, 730, 739, 812
BstDSI CCRYGG 1 cut(s) 199
BstF5I GGATG 1 cut(s) 306
BstFNI CGCG 3 cut(s) 299, 338, 375
BstH2I RGCGCY 2 cut(s) 253, 611
BstHHI GCGC 3 cut(s) 252, 338, 610
BstKTI GATC 7 cut(s) 46, 114, 223, 444, 651, 697, 707
BstMAI GTCTC 3 cut(s) 292, 535, 647
BstMBI GATC 7 cut(s) 43, 111, 220, 441, 648, 694, 704
BstMWI GCNNNNNNNGC 8 cut(s) 28, 37, 335, 363, 372, 381, 709, 740
BstNI CCWGG 1 cut(s) 485
BstNSI RCATGY 1 cut(s) 595
BstSCI CCNGG 1 cut(s) 483
BstSFI CTRYAG 2 cut(s) 64, 510
BstSLI GKGCMC 1 cut(s) 599
BstUI CGCG 3 cut(s) 299, 338, 375
BstV1I GCAGC 3 cut(s) 40, 50, 524
BstV2I GAAGAC 4 cut(s) 62, 146, 249, 470
BsuRI GGCC 4 cut(s) 18, 488, 576, 803
BtgI CCRYGG 1 cut(s) 199
BtgZI GCGATG 2 cut(s) 347, 758
BtrI CACGTC 1 cut(s) 807
BtsCI GGATG 1 cut(s) 306
BtsIMutI CAGTG 1 cut(s) 415
BveI ACCTGC 2 cut(s) 517, 797
Cac8I GCNNGC 3 cut(s) 20, 560, 783
CfoI GCGC 3 cut(s) 252, 338, 610
Cfr10I RCCGGY 3 cut(s) 526, 572, 699
Cfr13I GGNCC 4 cut(s) 7, 466, 487, 679
CpoI CGGWCCG 1 cut(s) 466
CseI GACGC 1 cut(s) 128
Csp6I GTAC 1 cut(s) 570
CspAI ACCGGT 1 cut(s) 526
CspI CGGWCCG 1 cut(s) 466
CviAII CATG 4 cut(s) 108, 200, 592, 601
CviQI GTAC 1 cut(s) 570
DdeI CTNAG 9 cut(s) 213, 521, 532, 683, 691, 708, 730, 739, 812
DpnI GATC 7 cut(s) 45, 113, 222, 443, 650, 696, 706
DpnII GATC 7 cut(s) 43, 111, 220, 441, 648, 694, 704
DraIII CACNNNGTG 1 cut(s) 37
EaeI YGGCCR 2 cut(s) 16, 801
Eam1104I CTCTTC 1 cut(s) 497
EarI CTCTTC 1 cut(s) 497
Eco130I CCWWGG 3 cut(s) 10, 199, 798
Eco31I GGTCTC 1 cut(s) 535
Eco47I GGWCC 3 cut(s) 7, 466, 679
Eco47III AGCGCT 1 cut(s) 251
Eco57I CTGAAG 1 cut(s) 261
Eco88I CYCGRG 1 cut(s) 226
EcoO109I RGGNCCY 2 cut(s) 487, 679
EcoRII CCWGG 1 cut(s) 483
EcoT14I CCWWGG 3 cut(s) 10, 199, 798
ErhI CCWWGG 3 cut(s) 10, 199, 798
Esp3I CGTCTC 1 cut(s) 647
FaeI CATG 4 cut(s) 111, 203, 595, 604
FaiI YATR 6 cut(s) 109, 201, 278, 593, 602, 666
FalI AAGNNNNNCTT 2 cut(s) 33, 65
FaqI GGGAC 3 cut(s) 306, 641, 692
FatI CATG 4 cut(s) 107, 199, 591, 600
Fnu4HI GCNGC 5 cut(s) 54, 64, 300, 411, 513
FokI GGATG 1 cut(s) 293
Fsp4HI GCNGC 5 cut(s) 54, 64, 300, 411, 513
FspBI CTAG 3 cut(s) 318, 498, 820
GlaI GCGC 3 cut(s) 251, 337, 609
GluI GCNGC 5 cut(s) 54, 64, 300, 411, 513
GsuI CTGGAG 2 cut(s) 467, 629
HaeII RGCGCY 2 cut(s) 253, 611
HaeIII GGCC 4 cut(s) 18, 488, 576, 803
HapII CCGG 9 cut(s) 96, 123, 259, 333, 464, 527, 573, 700, 722
HgaI GACGC 1 cut(s) 128
HhaI GCGC 3 cut(s) 252, 338, 610
Hin1I GRCGYC 3 cut(s) 120, 434, 640
Hin1II CATG 4 cut(s) 111, 203, 595, 604
Hin6I GCGC 3 cut(s) 250, 336, 608
HinP1I GCGC 3 cut(s) 250, 336, 608
HinfI GANTC 3 cut(s) 24, 99, 126
HpaII CCGG 9 cut(s) 96, 123, 259, 333, 464, 527, 573, 700, 722
HphI GGTGA 4 cut(s) 378, 498, 643, 689
Hpy188I TCNGA 3 cut(s) 524, 694, 770
Hpy188III TCNNGA 4 cut(s) 583, 636, 646, 658
Hpy99I CGWCG 6 cut(s) 122, 299, 375, 436, 439, 642
HpyAV CCTTC 1 cut(s) 482
HpyCH4III ACNGT 3 cut(s) 295, 619, 655
HpyCH4IV ACGT 3 cut(s) 434, 640, 806
HpyCH4V TGCA 4 cut(s) 40, 66, 512, 785
HpyF10VI GCNNNNNNNGC 8 cut(s) 28, 37, 335, 363, 372, 381, 709, 740
HpyF3I CTNAG 9 cut(s) 213, 521, 532, 683, 691, 708, 730, 739, 812
HpySE526I ACGT 3 cut(s) 434, 640, 806
Hsp92I GRCGYC 3 cut(s) 120, 434, 640
Hsp92II CATG 4 cut(s) 111, 203, 595, 604
HspAI GCGC 3 cut(s) 250, 336, 608
Kzo9I GATC 7 cut(s) 43, 111, 220, 441, 648, 694, 704
LmnI GCTCC 1 cut(s) 692
Lsp1109I GCAGC 3 cut(s) 40, 50, 524
LweI GCATC 3 cut(s) 82, 85, 437
MaeI CTAG 3 cut(s) 318, 498, 820
MaeII ACGT 3 cut(s) 434, 640, 806
MaeIII GTNAC 2 cut(s) 619, 807
MalI GATC 7 cut(s) 45, 113, 222, 443, 650, 696, 706
MboI GATC 7 cut(s) 43, 111, 220, 441, 648, 694, 704
MboII GAAGA 6 cut(s) 62, 146, 151, 254, 470, 484
MhlI GDGCHC 1 cut(s) 599
MlsI TGGCCA 2 cut(s) 18, 803
MluNI TGGCCA 2 cut(s) 18, 803
MlyI GAGTC 1 cut(s) 33
MnlI CCTC 9 cut(s) 44, 261, 368, 500, 587, 692, 700, 729, 748
Mox20I TGGCCA 2 cut(s) 18, 803
MscI TGGCCA 2 cut(s) 18, 803
MseI TTAA 1 cut(s) 185
Msp20I TGGCCA 2 cut(s) 18, 803
MspA1I CMGCKG 1 cut(s) 63
MspI CCGG 9 cut(s) 96, 123, 259, 333, 464, 527, 573, 700, 722
MspR9I CCNGG 1 cut(s) 485
MvaI CCWGG 1 cut(s) 485
MvnI CGCG 3 cut(s) 299, 338, 375
MwoI GCNNNNNNNGC 8 cut(s) 28, 37, 335, 363, 372, 381, 709, 740
NcoI CCATGG 1 cut(s) 199
NdeII GATC 7 cut(s) 43, 111, 220, 441, 648, 694, 704
NlaIII CATG 4 cut(s) 111, 203, 595, 604
NlaIV GGNNCC 2 cut(s) 379, 680
NmuCI GTSAC 2 cut(s) 619, 807
NspI RCATGY 1 cut(s) 595
PaqCI CACCTGC 1 cut(s) 517
PciI ACATGT 1 cut(s) 591
PcsI WCGNNNNNNNCGW 1 cut(s) 437
PfeI GAWTC 2 cut(s) 99, 126
PinAI ACCGGT 1 cut(s) 526
PkrI GCNGC 5 cut(s) 55, 65, 301, 412, 514
PleI GAGTC 1 cut(s) 32
PpsI GAGTC 1 cut(s) 32
PpuMI RGGWCCY 1 cut(s) 679
PscI ACATGT 1 cut(s) 591
Psp5II RGGWCCY 1 cut(s) 679
Psp6I CCWGG 1 cut(s) 483
PspGI CCWGG 1 cut(s) 483
PspN4I GGNNCC 2 cut(s) 379, 680
PspPI GGNCC 4 cut(s) 7, 466, 487, 679
PspPPI RGGWCCY 1 cut(s) 679
PstI CTGCAG 2 cut(s) 68, 514
RsaI GTAC 1 cut(s) 571
RsaNI GTAC 1 cut(s) 570
Rsr2I CGGWCCG 1 cut(s) 466
RsrII CGGWCCG 1 cut(s) 466
SaqAI TTAA 1 cut(s) 185
SatI GCNGC 5 cut(s) 54, 64, 300, 411, 513
Sau3AI GATC 7 cut(s) 43, 111, 220, 441, 648, 694, 704
Sau96I GGNCC 4 cut(s) 7, 466, 487, 679
SchI GAGTC 1 cut(s) 33
ScrFI CCNGG 1 cut(s) 485
SduI GDGCHC 1 cut(s) 599
SfaNI GCATC 3 cut(s) 82, 85, 437
SfcI CTRYAG 2 cut(s) 64, 510
SgrAI CRCCGGYG 1 cut(s) 699
SinI GGWCC 3 cut(s) 7, 466, 679
SsiI CCGC 9 cut(s) 5, 61, 74, 299, 327, 375, 411, 469, 779
SspMI CTAG 3 cut(s) 318, 498, 820
StyD4I CCNGG 1 cut(s) 483
StyI CCWWGG 3 cut(s) 10, 199, 798
TaaI ACNGT 3 cut(s) 295, 619, 655
TaiI ACGT 3 cut(s) 437, 643, 809
TaqI TCGA 2 cut(s) 431, 637
TauI GCSGC 2 cut(s) 302, 413
TfiI GAWTC 2 cut(s) 99, 126
Tru1I TTAA 1 cut(s) 185
Tru9I TTAA 1 cut(s) 185
TscAI CASTG 1 cut(s) 422
TseFI GTSAC 2 cut(s) 619, 807
TseI GCWGC 3 cut(s) 53, 63, 512
Tsp45I GTSAC 2 cut(s) 619, 807
TspGWI ACGGA 4 cut(s) 102, 147, 359, 557
TspRI CASTG 1 cut(s) 422
VpaK11BI GGWCC 3 cut(s) 7, 466, 679
XceI RCATGY 1 cut(s) 595
XspI CTAG 3 cut(s) 318, 498, 820
ZraI GACGTC 2 cut(s) 435, 641
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.