Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004690

Physical Location & Seq

Genomic Coordinates Reverse (-)

10763206 .. 10765795

Gene Structure 2590 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G19810.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGTCTTCAACAAAACTCATATCGCTCATTGTCTCCATAACATTCTTCCTCACTCTCCAATGCTCAATGGCACAAACTGTCGTAAAAGCTTCGTACTGGTTCCCGGCGAGTGAATTTCCGGTTACCGACATTGACTCATCTCTCTTCACTCACCTTTTTTGTGCTTTCGCTGATCTCAACTCTCAAACCAATCAAGTCACTGTCTCCTCCGCAAACCAACCTAAATTCTCAACCTTTACACAAACTGTCCAACGCAGAAACCCTTCTGTTAAAACCCTCTTGTCCATCGGCGGTGGAATAGCAGATAAAACCGCGTATGCTTCTATGGCAAGTAACCCCACTTCTCGAAAATCATTCATTGATTCTTCGATAAGAGTGGCTAGATCCTATGGATTCCACGGTCTTGATCTAGACTGGGAGTATCCGAGCAGTGCGACGGAGATGACCAACTTCGGAACGCTACTTCGAGAATGGCGATCAGCGGTTGTAGCAGAAGCTAGTAGCAGCGGTAAACCGCGTTTGCTTTTGGCGGCTGCGGTTTTCTACTCCAACAATTACTATTCGGTACTGTACCCGGTTTCAGCCGTTGCTAGCAGCTTGGATTGGGTTAATCTTATGGCCTATGATTTTTACGGACCGGGTTGGTCCAGAGTGACCGGTCCACCAGCCGCTCTGTTTGATCCTTCAAACGCAGGTCCAAGCGGAGACGCTGGAACAAGGTCATGGATTCAAGCTGGACTCCCAGCGAAGAAAGCTGTCTTGGGATTTCCATACTACGGGTACGCGTGGCGTCTCACAAACGCCAACAGTCATAGCTACTACGCGCCTACCACTGGAGCGGCGATATCACCAGATGGTTCGATAGGTTACGGTCAGATAAGGAAGTTTATAGTAGATAACGGAGCAACAACGGTTTATAACTCCACAGTGGTCGGAGATTATTGTTATGCCGGCACGAATTGGATTGGTTACGATGATAATCAGAGTATTGTGACGAAAGTTAGATATGCCAAGCAGAGAGGTTTGCTTGGTTACTTCTCGTGGCATGTCGGTGCTGACGATAATTCTGGTCTATCTCGTGCAGCTTCACAGGCATGGGATGCTACGACGGCAACCACCAGAACTATACAGAAGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004553 GO:0004568 GO:0005488 GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0006022 GO:0006026 GO:0006030 GO:0006032 GO:0006040 GO:0006807 GO:0006950 GO:0006970 GO:0008061 GO:0008144 GO:0008150 GO:0008152 GO:0008843 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009753 GO:0009987 GO:0010033 GO:0016787 GO:0016798 GO:0017144 GO:0030312 GO:0033993 GO:0035885 GO:0042221 GO:0042737 GO:0043170 GO:0044237 GO:0044248 GO:0044464 GO:0046348 GO:0050896 GO:0071704 GO:0071944 GO:0097305 GO:0097367 GO:1901071 GO:1901072 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Glyco_hydro_18

Protein Analysis

379

Amino Acids

41.13

Weight (kDa)

8.91

Isoelectric Point (pI)

33.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_18	PF00704	31 - 353	3.4e-80	Glycosyl hydrolases family 18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004690)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19720 AT4G19740 AT4G19750 AT4G19760 AT4G19770 AT4G19800 AT4G19810 AT4G19810 AT4G19820
fragaria_vesca	FvH4_1g01321 FvH4_1g01362 FvH4_1g01382
malus_domestica	MD02G1011100.v1.1 MD15G1156100.v1.1
prunus_persica	Prupe.4G180800_v2.0.a1 Prupe.7G258500_v2.0.a1 Prupe.7G259000_v2.0.a1
pyrus_communis	pycom02g01000
rosa_chinensis	RchiOBHm_Chr2g0086161
rosa_laevigata	RLG00000027969 RLG00000033389
rosa_multiflora	Rmu_co8454935.1_g000002 Rmu_sc0004510.1_g000010 Rmu_sc0004948.1_g000003 Rmu_sc0004948.1_g000021
rosa_roxburghii	Rroxscaffold_152G00434840
rosa_rugosa	Rorug01G0466300
rosa_samantha	Rh2AG016100 Rh2CG017000 Rh2DG018100
rosa_wichuraiana	Rw2G001390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	918
Acc36I	ACCTGC	1 cut(s)	683
AccBSI	CCGCTC	2 cut(s)	671, 839
AccII	CGCG	4 cut(s)	314, 517, 785, 824
AclWI	GGATC	2 cut(s)	378, 674
AcsI	RAATTY	2 cut(s)	113, 224
AcyI	GRCGYC	1 cut(s)	790
AfaI	GTAC	4 cut(s)	95, 567, 572, 782
AfiI	CCNNNNNNNGG	2 cut(s)	776, 833
AflIII	ACRYGT	1 cut(s)	783
AgeI	ACCGGT	1 cut(s)	656
AgsI	TTSAA	3 cut(s)	9, 687, 731
AjuI	GAANNNNNNNTTGG	2 cut(s)	743, 775
AluBI	AGCT	7 cut(s)	89, 497, 597, 734, 755, 816, 1085
AluI	AGCT	7 cut(s)	89, 497, 597, 734, 755, 816, 1085
Alw26I	GTCTC	4 cut(s)	37, 208, 699, 797
AlwI	GGATC	2 cut(s)	378, 674
AoxI	GGCC	1 cut(s)	618
ApeKI	GCWGC	4 cut(s)	504, 533, 594, 1082
ApoI	RAATTY	2 cut(s)	113, 224
AsiGI	ACCGGT	1 cut(s)	656
Asp700I	GAANNNNTTC	1 cut(s)	262
AspLEI	GCGC	1 cut(s)	826
AspS9I	GGNCC	4 cut(s)	635, 645, 659, 695
AsuC2I	CCSGG	3 cut(s)	104, 575, 639
AsuHPI	GGTGA	2 cut(s)	143, 840
AsuNHI	GCTAGC	1 cut(s)	590
AvaII	GGWCC	4 cut(s)	635, 645, 659, 695
BarI	GAAGNNNNNNTAC	2 cut(s)	325, 357
BauI	CACGAG	2 cut(s)	1039, 1077
BbvI	GCAGC	4 cut(s)	516, 520, 606, 1094
BccI	CCATC	2 cut(s)	293, 848
BceAI	ACGGC	2 cut(s)	569, 1125
BciVI	GTATCC	1 cut(s)	432
BcnI	CCSGG	3 cut(s)	104, 575, 639
BcoDI	GTCTC	4 cut(s)	37, 208, 699, 797
BfaI	CTAG	4 cut(s)	381, 410, 498, 591
BfuAI	ACCTGC	1 cut(s)	683
BfuI	GTATCC	1 cut(s)	432
BisI	GCNGC	7 cut(s)	505, 531, 534, 595, 669, 840, 1083
BlsI	GCNGC	7 cut(s)	506, 532, 535, 596, 670, 841, 1084
Bme1390I	CCNGG	3 cut(s)	104, 575, 639
Bme18I	GGWCC	4 cut(s)	635, 645, 659, 695
BmgT120I	GGNCC	4 cut(s)	635, 645, 659, 695
BmiI	GGNNCC	1 cut(s)	101
BmrFI	CCNGG	3 cut(s)	104, 575, 639
BmrI	ACTGGG	1 cut(s)	424
BmsI	GCATC	1 cut(s)	1090
BmtI	GCTAGC	1 cut(s)	594
BmuI	ACTGGG	1 cut(s)	424
BpmI	CTGGAG	1 cut(s)	855
BpuMI	CCSGG	3 cut(s)	104, 575, 639
BsaBI	GATNNNNATC	1 cut(s)	978
BsaHI	GRCGYC	1 cut(s)	790
BsaJI	CCNNGG	1 cut(s)	397
BsaWI	WCCGGW	2 cut(s)	118, 656
Bsc4I	CCNNNNNNNGG	2 cut(s)	776, 833
Bse118I	RCCGGY	2 cut(s)	656, 950
Bse1I	ACTGG	3 cut(s)	101, 419, 838
Bse8I	GATNNNNATC	1 cut(s)	978
BseDI	CCNNGG	1 cut(s)	397
BseGI	GGATG	1 cut(s)	1105
BseJI	GATNNNNATC	1 cut(s)	978
BseLI	CCNNNNNNNGG	2 cut(s)	776, 833
BseNI	ACTGG	3 cut(s)	101, 419, 838
BseRI	GAGGAG	1 cut(s)	196
BseXI	GCAGC	4 cut(s)	516, 520, 606, 1094
BseYI	CCCAGC	1 cut(s)	742
BsgI	GTGCAG	1 cut(s)	1101
Bsh1236I	CGCG	4 cut(s)	314, 517, 785, 824
BshFI	GGCC	1 cut(s)	620
BshTI	ACCGGT	1 cut(s)	656
BsiSI	CCGG	6 cut(s)	104, 119, 575, 638, 657, 951
BslI	CCNNNNNNNGG	2 cut(s)	776, 833
BsmAI	GTCTC	4 cut(s)	37, 208, 699, 797
BsmBI	CGTCTC	2 cut(s)	699, 797
BsnI	GGCC	1 cut(s)	620
Bsp143I	GATC	5 cut(s)	172, 383, 406, 476, 679
BspANI	GGCC	1 cut(s)	620
BspFNI	CGCG	4 cut(s)	314, 517, 785, 824
BspLI	GGNNCC	1 cut(s)	101
BspMI	ACCTGC	1 cut(s)	683
BspOI	GCTAGC	1 cut(s)	594
BspPI	GGATC	2 cut(s)	378, 674
BsrBI	CCGCTC	2 cut(s)	671, 839
BsrFI	RCCGGY	2 cut(s)	656, 950
BsrI	ACTGG	3 cut(s)	101, 419, 838
BssAI	RCCGGY	2 cut(s)	656, 950
BssECI	CCNNGG	1 cut(s)	397
BssMI	GATC	5 cut(s)	172, 383, 406, 476, 679
BssNI	GRCGYC	1 cut(s)	790
BssSI	CACGAG	2 cut(s)	1039, 1077
Bst2BI	CACGAG	2 cut(s)	1039, 1077
Bst4CI	ACNGT	9 cut(s)	79, 202, 247, 401, 570, 809, 872, 913, 928
Bst6I	CTCTTC	1 cut(s)	149
BstACI	GRCGYC	1 cut(s)	790
BstAPI	GCANNNNNTGC	1 cut(s)	1100
BstC8I	GCNNGC	2 cut(s)	592, 952
BstDSI	CCRYGG	1 cut(s)	397
BstEII	GGTNACC	1 cut(s)	121
BstF5I	GGATG	1 cut(s)	1105
BstFNI	CGCG	4 cut(s)	314, 517, 785, 824
BstHHI	GCGC	1 cut(s)	826
BstKTI	GATC	5 cut(s)	175, 386, 409, 479, 682
BstMAI	GTCTC	4 cut(s)	37, 208, 699, 797
BstMBI	GATC	5 cut(s)	172, 383, 406, 476, 679
BstMWI	GCNNNNNNNGC	6 cut(s)	326, 488, 752, 1091, 1100, 1109
BstNSI	RCATGY	1 cut(s)	1049
BstPI	GGTNACC	1 cut(s)	121
BstSCI	CCNGG	3 cut(s)	102, 573, 637
BstUI	CGCG	4 cut(s)	314, 517, 785, 824
BstV1I	GCAGC	4 cut(s)	516, 520, 606, 1094
BstX2I	RGATCY	1 cut(s)	383
BstYI	RGATCY	1 cut(s)	383
BsuI	GTATCC	1 cut(s)	432
BsuRI	GGCC	1 cut(s)	620
BtgI	CCRYGG	1 cut(s)	397
BtsCI	GGATG	1 cut(s)	1105
BtsI	GCAGTG	1 cut(s)	436
BtsIMutI	CAGTG	4 cut(s)	198, 436, 831, 933
BveI	ACCTGC	1 cut(s)	683
Cac8I	GCNNGC	2 cut(s)	592, 952
CfoI	GCGC	1 cut(s)	826
Cfr10I	RCCGGY	2 cut(s)	656, 950
Cfr13I	GGNCC	4 cut(s)	635, 645, 659, 695
CpoI	CGGWCCG	1 cut(s)	635
CseI	GACGC	2 cut(s)	716, 779
Csp6I	GTAC	4 cut(s)	94, 566, 571, 781
CspAI	ACCGGT	1 cut(s)	656
CspI	CGGWCCG	1 cut(s)	635
CviAII	CATG	3 cut(s)	723, 1046, 1095
CviQI	GTAC	4 cut(s)	94, 566, 571, 781
DpnI	GATC	5 cut(s)	174, 385, 408, 478, 681
DpnII	GATC	5 cut(s)	172, 383, 406, 476, 679
Eam1104I	CTCTTC	1 cut(s)	149
EarI	CTCTTC	1 cut(s)	149
Eco32I	GATATC	1 cut(s)	846
Eco47I	GGWCC	4 cut(s)	635, 645, 659, 695
Eco91I	GGTNACC	1 cut(s)	121
EcoO65I	GGTNACC	1 cut(s)	121
EcoRV	GATATC	1 cut(s)	846
Esp3I	CGTCTC	2 cut(s)	699, 797
FaeI	CATG	3 cut(s)	726, 1049, 1098
FatI	CATG	3 cut(s)	722, 1045, 1094
Fnu4HI	GCNGC	7 cut(s)	505, 531, 534, 595, 669, 840, 1083
FokI	GGATG	1 cut(s)	1112
Fsp4HI	GCNGC	7 cut(s)	505, 531, 534, 595, 669, 840, 1083
FspBI	CTAG	4 cut(s)	381, 410, 498, 591
GlaI	GCGC	1 cut(s)	825
GluI	GCNGC	7 cut(s)	505, 531, 534, 595, 669, 840, 1083
GsaI	CCCAGC	1 cut(s)	746
GsuI	CTGGAG	1 cut(s)	855
HaeIII	GGCC	1 cut(s)	620
HapII	CCGG	6 cut(s)	104, 119, 575, 638, 657, 951
HgaI	GACGC	2 cut(s)	716, 779
HhaI	GCGC	1 cut(s)	826
Hin1I	GRCGYC	1 cut(s)	790
Hin1II	CATG	3 cut(s)	726, 1049, 1098
Hin6I	GCGC	1 cut(s)	824
HinP1I	GCGC	1 cut(s)	824
HindIII	AAGCTT	1 cut(s)	87
HinfI	GANTC	5 cut(s)	134, 362, 393, 727, 738
HpaII	CCGG	6 cut(s)	104, 119, 575, 638, 657, 951
HphI	GGTGA	2 cut(s)	143, 840
Hpy166II	GTNNAC	2 cut(s)	512, 662
Hpy188I	TCNGA	5 cut(s)	426, 455, 876, 935, 984
Hpy188III	TCNNGA	5 cut(s)	345, 404, 410, 467, 648
Hpy8I	GTNNAC	2 cut(s)	512, 662
Hpy99I	CGWCG	2 cut(s)	439, 1111
HpyAV	CCTTC	3 cut(s)	273, 693, 1126
HpyCH4III	ACNGT	9 cut(s)	79, 202, 247, 401, 570, 809, 872, 913, 928
HpyCH4V	TGCA	1 cut(s)	1082
HpyF10VI	GCNNNNNNNGC	6 cut(s)	326, 488, 752, 1091, 1100, 1109
Hsp92I	GRCGYC	1 cut(s)	790
Hsp92II	CATG	3 cut(s)	726, 1049, 1098
HspAI	GCGC	1 cut(s)	824
KroI	GCCGGC	1 cut(s)	950
KroNI	GCCGGC	1 cut(s)	952
Kzo9I	GATC	5 cut(s)	172, 383, 406, 476, 679
LmnI	GCTCC	2 cut(s)	836, 902
Lsp1109I	GCAGC	4 cut(s)	516, 520, 606, 1094
LweI	GCATC	1 cut(s)	1090
MaeI	CTAG	4 cut(s)	381, 410, 498, 591
MaeIII	GTNAC	8 cut(s)	121, 196, 332, 652, 866, 968, 991, 1031
MalI	GATC	5 cut(s)	174, 385, 408, 478, 681
MbiI	CCGCTC	2 cut(s)	671, 839
MboI	GATC	5 cut(s)	172, 383, 406, 476, 679
MboII	GAAGA	4 cut(s)	37, 136, 357, 760
MflI	RGATCY	1 cut(s)	383
MluCI	AATT	5 cut(s)	113, 224, 553, 958, 1063
MluI	ACGCGT	1 cut(s)	783
MlyI	GAGTC	2 cut(s)	128, 732
MmeI	TCCRAC	3 cut(s)	274, 573, 913
MnlI	CCTC	4 cut(s)	59, 217, 287, 1013
MroNI	GCCGGC	1 cut(s)	950
MroXI	GAANNNNTTC	1 cut(s)	262
MseI	TTAA	3 cut(s)	270, 609, 1138
MslI	CAYNNNNRTG	2 cut(s)	1050, 1093
MspA1I	CMGCKG	2 cut(s)	482, 507
MspI	CCGG	6 cut(s)	104, 119, 575, 638, 657, 951
MspR9I	CCNGG	3 cut(s)	104, 575, 639
MvnI	CGCG	4 cut(s)	314, 517, 785, 824
MwoI	GCNNNNNNNGC	6 cut(s)	326, 488, 752, 1091, 1100, 1109
NaeI	GCCGGC	1 cut(s)	952
NciI	CCSGG	3 cut(s)	104, 575, 639
NdeII	GATC	5 cut(s)	172, 383, 406, 476, 679
NgoMIV	GCCGGC	1 cut(s)	950
NheI	GCTAGC	1 cut(s)	590
NlaIII	CATG	3 cut(s)	726, 1049, 1098
NlaIV	GGNNCC	1 cut(s)	101
NmuCI	GTSAC	3 cut(s)	196, 652, 991
NspI	RCATGY	1 cut(s)	1049
PcsI	WCGNNNNNNNCGW	2 cut(s)	472, 1056
PdiI	GCCGGC	1 cut(s)	952
PdmI	GAANNNNTTC	1 cut(s)	262
PfeI	GAWTC	3 cut(s)	362, 393, 727
PinAI	ACCGGT	1 cut(s)	656
PkrI	GCNGC	7 cut(s)	506, 532, 535, 596, 670, 841, 1084
PleI	GAGTC	2 cut(s)	128, 732
PpsI	GAGTC	2 cut(s)	128, 732
PsiI	TTATAA	1 cut(s)	918
PspEI	GGTNACC	1 cut(s)	121
PspFI	CCCAGC	1 cut(s)	742
PspN4I	GGNNCC	1 cut(s)	101
PspPI	GGNCC	4 cut(s)	635, 645, 659, 695
PsuI	RGATCY	1 cut(s)	383
RsaI	GTAC	4 cut(s)	95, 567, 572, 782
RsaNI	GTAC	4 cut(s)	94, 566, 571, 781
RseI	CAYNNNNRTG	2 cut(s)	1050, 1093
Rsr2I	CGGWCCG	1 cut(s)	635
RsrII	CGGWCCG	1 cut(s)	635
SaqAI	TTAA	3 cut(s)	270, 609, 1138
SatI	GCNGC	7 cut(s)	505, 531, 534, 595, 669, 840, 1083
Sau3AI	GATC	5 cut(s)	172, 383, 406, 476, 679
Sau96I	GGNCC	4 cut(s)	635, 645, 659, 695
SchI	GAGTC	2 cut(s)	128, 732
ScrFI	CCNGG	3 cut(s)	104, 575, 639
SfaNI	GCATC	1 cut(s)	1090
SinI	GGWCC	4 cut(s)	635, 645, 659, 695
SmiMI	CAYNNNNRTG	2 cut(s)	1050, 1093
Sse9I	AATT	5 cut(s)	113, 224, 553, 958, 1063
SspMI	CTAG	4 cut(s)	381, 410, 498, 591
StyD4I	CCNGG	3 cut(s)	102, 573, 637
TaaI	ACNGT	9 cut(s)	79, 202, 247, 401, 570, 809, 872, 913, 928
TaqI	TCGA	4 cut(s)	346, 368, 466, 860
TasI	AATT	5 cut(s)	113, 224, 553, 958, 1063
TauI	GCSGC	3 cut(s)	533, 671, 842
TfiI	GAWTC	3 cut(s)	362, 393, 727
Tru1I	TTAA	3 cut(s)	270, 609, 1138
Tru9I	TTAA	3 cut(s)	270, 609, 1138
TscAI	CASTG	4 cut(s)	205, 436, 838, 933
TseFI	GTSAC	3 cut(s)	196, 652, 991
TseI	GCWGC	4 cut(s)	504, 533, 594, 1082
Tsp45I	GTSAC	3 cut(s)	196, 652, 991
TspDTI	ATGAA	1 cut(s)	346
TspGWI	ACGGA	3 cut(s)	452, 648, 915
TspRI	CASTG	4 cut(s)	205, 436, 838, 933
VpaK11BI	GGWCC	4 cut(s)	635, 645, 659, 695
XapI	RAATTY	2 cut(s)	113, 224
XbaI	TCTAGA	1 cut(s)	409
XceI	RCATGY	1 cut(s)	1049
XmnI	GAANNNNTTC	1 cut(s)	262
XspI	CTAG	4 cut(s)	381, 410, 498, 591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.