FvH4_1g01321

Glyco_18

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Forward (+)
666217 .. 667933
1717 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g01321.t1

Sequence Viewer

Length: 1134 bp
ATGTCTTCCAAATCAATAACTCTTCCATTTCTCTTCTCCCTCATCCTCTTATTCCTTAGCCACTACCTCAATGTCTCCGCCGCCCAAACCACCGTCGTTAAAGCCGCTTACTGGTTTCCAGACAGCGGCCAAGCAGTCTCCGCCATAAACTCCACCCTCTTCACCCACCTCTTCTGTGCTTTCGCAGATCTCAACCCCACCACTTACCAAGTCGCCATTTCCTCCGCAAACTCGCCTCAGTTCTCAACTTTCACTCAAACAGTCCAACAGAAAAACCCTAACGTCAAAACCCTCCTCTCCATCGGCGGAGGAAACTCCAGCCCCTCCACCTTCGCCGCCATGGCAAGCCAGGCCACTCGTCGCAAAGCATTTATAGACTCGTCCATCAAATTAGCGAGAAACTACTCCTTCTACGGCCTTGACCTAGATTGGGAGTACCCTTCCTCCGCCACCGAGATGACCAACTTCGGCAGCCTCCTCACGGAATGGCGCTCCGCGGTGGCCAACGAGTCAAGCACCTCCGGCAAGACGGCGTTGCTGTTGACCGCTGCAGTCTTCCGCAATGCGGATTACTACAGCATAAACTATCCGTTCCAGGCTGTTTCGAGCAGCCTGGACTGGATCAACGTCATGACGTACGATTACTACGGTCCTAGTTTCGCCGAAGGTAAAACAAAAACTTACCCGCCAGCTGCATTATACAACGGCCGATCCACCACTCTCATCAACGGAGACGCCGGAATCGTGTCGTGGATCAACAACGCCGGAATCTCAACCAAGAAGATAGTCATTGGTCTTCCGTTTTATGGGTACGCTTGGAGATTGTTAAACTCTAATAACCATGCATTTTTCGCTCCGGCTAATGGCTCGGCTATCGGAGCTAACGGAGACCAGGGTTACAACCAGATTAGGGTTTTGATCAGCCGAGGGTTTCAGACGGTGTACAATGCGACGGTGGTTAGTAACTACTGTTACAATGGGACGACTTGGATTGGTTACGATGATACGCAGAGTATTGGCGCCAAGGTTTCGTATGCTAAAGGAAAGTCTCTTCTTGGTTACTTTGCTTGGCATACTGGTGCTGACACGACTACCTGGACTCTCTCTCAAACAGCTTTCAGTACATGGGGATGA

Protein Analysis

378

Amino Acids

41.07

Weight (kDa)

8.95

Isoelectric Point (pI)

30.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_18 PF00704 36 - 362 5.2e-72 Glycosyl hydrolases family 18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1019
AccII CGCG 1 cut(s) 497
AclWI GGATC 3 cut(s) 629, 705, 761
AcoI YGGCCR 3 cut(s) 127, 501, 706
AcyI GRCGYC 2 cut(s) 735, 1020
AfaI GTAC 5 cut(s) 437, 638, 812, 944, 1123
AfiI CCNNNNNNNGG 8 cut(s) 111, 125, 430, 481, 565, 806, 863, 910
AjnI CCWGG 5 cut(s) 348, 594, 612, 891, 1094
AluBI AGCT 3 cut(s) 692, 881, 1115
AluI AGCT 3 cut(s) 692, 881, 1115
Alw26I GTCTC 5 cut(s) 79, 142, 726, 882, 1053
AlwI GGATC 3 cut(s) 629, 705, 761
AoxI GGCC 5 cut(s) 127, 351, 415, 501, 706
ApeKI GCWGC 4 cut(s) 471, 548, 609, 692
AspLEI GCGC 2 cut(s) 492, 1022
AspS9I GGNCC 1 cut(s) 650
AsuHPI GGTGA 1 cut(s) 154
AvaII GGWCC 1 cut(s) 650
BalI TGGCCA 1 cut(s) 503
BanI GGYRCC 1 cut(s) 1019
BbsI GAAGAC 2 cut(s) 547, 788
BbvI GCAGC 4 cut(s) 483, 535, 621, 679
BccI CCATC 2 cut(s) 308, 392
BceAI ACGGC 3 cut(s) 430, 546, 721
BciT130I CCWGG 5 cut(s) 350, 596, 614, 893, 1096
BclI TGATCA 1 cut(s) 918
BcoDI GTCTC 5 cut(s) 79, 142, 726, 882, 1053
BfaI CTAG 2 cut(s) 425, 654
BfmI CTRYAG 2 cut(s) 549, 574
BfoI RGCGCY 2 cut(s) 493, 1023
BglI GCCNNNNNGGC 1 cut(s) 341
BglII AGATCT 1 cut(s) 187
BisI GCNGC 8 cut(s) 81, 105, 127, 336, 472, 549, 610, 693
BlsI GCNGC 8 cut(s) 82, 106, 128, 337, 473, 550, 611, 694
Bme1390I CCNGG 5 cut(s) 350, 596, 614, 893, 1096
Bme18I GGWCC 1 cut(s) 650
BmgT120I GGNCC 1 cut(s) 650
BmiI GGNNCC 1 cut(s) 1021
BmrFI CCNGG 5 cut(s) 350, 596, 614, 893, 1096
BpiI GAAGAC 2 cut(s) 547, 788
BpmI CTGGAG 1 cut(s) 301
Bpu10I CCTNAGC 1 cut(s) 56
BsaHI GRCGYC 2 cut(s) 735, 1020
BsaI GGTCTC 1 cut(s) 882
BsaJI CCNNGG 5 cut(s) 339, 495, 892, 925, 1023
BsaXI ACNNNNNCTCC 2 cut(s) 428, 458
Bsc4I CCNNNNNNNGG 8 cut(s) 111, 125, 430, 481, 565, 806, 863, 910
Bse1I ACTGG 3 cut(s) 116, 623, 1081
Bse3DI GCAATG 1 cut(s) 568
BseBI CCWGG 5 cut(s) 350, 596, 614, 893, 1096
BseDI CCNNGG 5 cut(s) 339, 495, 892, 925, 1023
BseGI GGATG 1 cut(s) 42
BseLI CCNNNNNNNGG 8 cut(s) 111, 125, 430, 481, 565, 806, 863, 910
BseMI GCAATG 1 cut(s) 568
BseMII CTCAG 1 cut(s) 251
BseNI ACTGG 3 cut(s) 116, 623, 1081
BseRI GAGGAG 2 cut(s) 284, 467
BseX3I CGGCCG 1 cut(s) 706
BseXI GCAGC 4 cut(s) 483, 535, 621, 679
Bsh1236I CGCG 1 cut(s) 497
Bsh1285I CGRYCG 1 cut(s) 709
BshFI GGCC 5 cut(s) 129, 353, 417, 503, 708
BshNI GGYRCC 1 cut(s) 1019
BsiEI CGRYCG 1 cut(s) 709
BsiSI CCGG 4 cut(s) 522, 738, 765, 857
BsiWI CGTACG 1 cut(s) 636
BslFI GGGAC 1 cut(s) 994
BslI CCNNNNNNNGG 8 cut(s) 111, 125, 430, 481, 565, 806, 863, 910
BsmAI GTCTC 5 cut(s) 79, 142, 726, 882, 1053
BsmBI CGTCTC 1 cut(s) 726
BsmFI GGGAC 1 cut(s) 994
BsnI GGCC 5 cut(s) 129, 353, 417, 503, 708
Bso31I GGTCTC 1 cut(s) 882
Bsp1407I TGTACA 1 cut(s) 942
Bsp143I GATC 5 cut(s) 187, 621, 710, 753, 918
Bsp19I CCATGG 1 cut(s) 339
BspANI GGCC 5 cut(s) 129, 353, 417, 503, 708
BspCNI CTCAG 1 cut(s) 250
BspFNI CGCG 1 cut(s) 497
BspHI TCATGA 1 cut(s) 630
BspLI GGNNCC 1 cut(s) 1021
BspMAI CTGCAG 1 cut(s) 553
BspPI GGATC 3 cut(s) 629, 705, 761
BspT107I GGYRCC 1 cut(s) 1019
BspTNI GGTCTC 1 cut(s) 882
BsrDI GCAATG 1 cut(s) 568
BsrGI TGTACA 1 cut(s) 942
BsrI ACTGG 3 cut(s) 116, 623, 1081
BssECI CCNNGG 5 cut(s) 339, 495, 892, 925, 1023
BssMI GATC 5 cut(s) 187, 621, 710, 753, 918
BssNI GRCGYC 2 cut(s) 735, 1020
BssT1I CCWWGG 2 cut(s) 339, 1023
Bst2UI CCWGG 5 cut(s) 350, 596, 614, 893, 1096
Bst4CI ACNGT 6 cut(s) 94, 262, 650, 940, 955, 971
Bst6I CTCTTC 5 cut(s) 27, 38, 164, 176, 1056
BstACI GRCGYC 2 cut(s) 735, 1020
BstAUI TGTACA 1 cut(s) 942
BstC8I GCNNGC 2 cut(s) 346, 690
BstDEI CTNAG 2 cut(s) 56, 237
BstDSI CCRYGG 2 cut(s) 339, 495
BstF5I GGATG 1 cut(s) 42
BstFNI CGCG 1 cut(s) 497
BstH2I RGCGCY 2 cut(s) 493, 1023
BstHHI GCGC 2 cut(s) 492, 1022
BstKTI GATC 5 cut(s) 190, 624, 713, 756, 921
BstMAI GTCTC 5 cut(s) 79, 142, 726, 882, 1053
BstMBI GATC 5 cut(s) 187, 621, 710, 753, 918
BstMCI CGRYCG 1 cut(s) 709
BstMWI GCNNNNNNNGC 6 cut(s) 140, 341, 350, 522, 851, 878
BstNI CCWGG 5 cut(s) 350, 596, 614, 893, 1096
BstSCI CCNGG 5 cut(s) 348, 594, 612, 891, 1094
BstSFI CTRYAG 2 cut(s) 549, 574
BstUI CGCG 1 cut(s) 497
BstV1I GCAGC 4 cut(s) 483, 535, 621, 679
BstV2I GAAGAC 2 cut(s) 547, 788
BstX2I RGATCY 1 cut(s) 187
BstYI RGATCY 1 cut(s) 187
BstZI CGGCCG 1 cut(s) 706
BsuRI GGCC 5 cut(s) 129, 353, 417, 503, 708
BtgI CCRYGG 2 cut(s) 339, 495
BtsCI GGATG 1 cut(s) 42
Cac8I GCNNGC 2 cut(s) 346, 690
CciI TCATGA 1 cut(s) 630
CfoI GCGC 2 cut(s) 492, 1022
Cfr13I GGNCC 1 cut(s) 650
Cfr42I CCGCGG 1 cut(s) 498
CseI GACGC 1 cut(s) 743
Csp6I GTAC 5 cut(s) 436, 637, 811, 943, 1122
CviAII CATG 4 cut(s) 340, 631, 842, 1125
CviQI GTAC 5 cut(s) 436, 637, 811, 943, 1122
DdeI CTNAG 2 cut(s) 56, 237
DinI GGCGCC 1 cut(s) 1021
DpnI GATC 5 cut(s) 189, 623, 712, 755, 920
DpnII GATC 5 cut(s) 187, 621, 710, 753, 918
EaeI YGGCCR 3 cut(s) 127, 501, 706
EagI CGGCCG 1 cut(s) 706
Eam1104I CTCTTC 5 cut(s) 27, 38, 164, 176, 1056
EarI CTCTTC 5 cut(s) 27, 38, 164, 176, 1056
EciI GGCGGA 4 cut(s) 67, 130, 321, 436
EclXI CGGCCG 1 cut(s) 706
Eco130I CCWWGG 2 cut(s) 339, 1023
Eco31I GGTCTC 1 cut(s) 882
Eco47I GGWCC 1 cut(s) 650
Eco52I CGGCCG 1 cut(s) 706
EcoRII CCWGG 5 cut(s) 348, 594, 612, 891, 1094
EcoT14I CCWWGG 2 cut(s) 339, 1023
EcoT22I ATGCAT 1 cut(s) 847
EgeI GGCGCC 1 cut(s) 1021
EheI GGCGCC 1 cut(s) 1021
ErhI CCWWGG 2 cut(s) 339, 1023
Esp3I CGTCTC 1 cut(s) 726
FaeI CATG 4 cut(s) 343, 634, 845, 1128
FaqI GGGAC 1 cut(s) 994
FatI CATG 4 cut(s) 339, 630, 841, 1124
FauI CCCGC 1 cut(s) 693
FbaI TGATCA 1 cut(s) 918
Fnu4HI GCNGC 8 cut(s) 81, 105, 127, 336, 472, 549, 610, 693
FokI GGATG 1 cut(s) 29
Fsp4HI GCNGC 8 cut(s) 81, 105, 127, 336, 472, 549, 610, 693
FspBI CTAG 2 cut(s) 425, 654
GlaI GCGC 2 cut(s) 491, 1021
GluI GCNGC 8 cut(s) 81, 105, 127, 336, 472, 549, 610, 693
GsuI CTGGAG 1 cut(s) 301
HaeII RGCGCY 2 cut(s) 493, 1023
HaeIII GGCC 5 cut(s) 129, 353, 417, 503, 708
HapII CCGG 4 cut(s) 522, 738, 765, 857
HgaI GACGC 1 cut(s) 743
HhaI GCGC 2 cut(s) 492, 1022
Hin1I GRCGYC 2 cut(s) 735, 1020
Hin1II CATG 4 cut(s) 343, 634, 845, 1128
Hin6I GCGC 2 cut(s) 490, 1020
HinP1I GCGC 2 cut(s) 490, 1020
HincII GTYRAC 1 cut(s) 543
HindII GTYRAC 1 cut(s) 543
HinfI GANTC 5 cut(s) 377, 509, 741, 768, 1099
HpaII CCGG 4 cut(s) 522, 738, 765, 857
HphI GGTGA 1 cut(s) 154
Hpy166II GTNNAC 2 cut(s) 543, 943
Hpy188I TCNGA 2 cut(s) 878, 936
Hpy188III TCNNGA 2 cut(s) 119, 631
Hpy8I GTNNAC 2 cut(s) 543, 943
Hpy99I CGWCG 3 cut(s) 98, 363, 955
HpyAV CCTTC 4 cut(s) 340, 418, 450, 659
HpyCH4III ACNGT 6 cut(s) 94, 262, 650, 940, 955, 971
HpyCH4IV ACGT 3 cut(s) 282, 627, 635
HpyCH4V TGCA 3 cut(s) 551, 695, 845
HpyF10VI GCNNNNNNNGC 6 cut(s) 140, 341, 350, 522, 851, 878
HpyF3I CTNAG 2 cut(s) 56, 237
HpySE526I ACGT 3 cut(s) 282, 627, 635
Hsp92I GRCGYC 2 cut(s) 735, 1020
Hsp92II CATG 4 cut(s) 343, 634, 845, 1128
HspAI GCGC 2 cut(s) 490, 1020
KasI GGCGCC 1 cut(s) 1019
Ksp22I TGATCA 1 cut(s) 918
KspI CCGCGG 1 cut(s) 498
Kzo9I GATC 5 cut(s) 187, 621, 710, 753, 918
LmnI GCTCC 3 cut(s) 497, 859, 878
Lsp1109I GCAGC 4 cut(s) 483, 535, 621, 679
MaeI CTAG 2 cut(s) 425, 654
MaeII ACGT 3 cut(s) 282, 627, 635
MaeIII GTNAC 5 cut(s) 896, 962, 971, 995, 1058
MalI GATC 5 cut(s) 189, 623, 712, 755, 920
MboI GATC 5 cut(s) 187, 621, 710, 753, 918
MboII GAAGA 8 cut(s) 14, 25, 151, 163, 547, 788, 793, 1043
MflI RGATCY 1 cut(s) 187
MlsI TGGCCA 1 cut(s) 503
MluCI AATT 1 cut(s) 389
MluNI TGGCCA 1 cut(s) 503
Mly113I GGCGCC 1 cut(s) 1020
MlyI GAGTC 3 cut(s) 371, 518, 1093
MmeI TCCRAC 1 cut(s) 289
Mox20I TGGCCA 1 cut(s) 503
Mph1103I ATGCAT 1 cut(s) 847
MscI TGGCCA 1 cut(s) 503
MseI TTAA 2 cut(s) 99, 827
MslI CAYNNNNRTG 3 cut(s) 455, 1077, 1129
Msp20I TGGCCA 1 cut(s) 503
MspA1I CMGCKG 4 cut(s) 126, 497, 548, 692
MspI CCGG 4 cut(s) 522, 738, 765, 857
MspR9I CCNGG 5 cut(s) 350, 596, 614, 893, 1096
MvaI CCWGG 5 cut(s) 350, 596, 614, 893, 1096
MvnI CGCG 1 cut(s) 497
MwoI GCNNNNNNNGC 6 cut(s) 140, 341, 350, 522, 851, 878
NarI GGCGCC 1 cut(s) 1020
NcoI CCATGG 1 cut(s) 339
NdeII GATC 5 cut(s) 187, 621, 710, 753, 918
NlaIII CATG 4 cut(s) 343, 634, 845, 1128
NlaIV GGNNCC 1 cut(s) 1021
NmeAIII GCCGAG 2 cut(s) 848, 950
NsiI ATGCAT 1 cut(s) 847
PagI TCATGA 1 cut(s) 630
PcsI WCGNNNNNNNCGW 1 cut(s) 741
PfeI GAWTC 2 cut(s) 741, 768
Pfl23II CGTACG 1 cut(s) 636
PkrI GCNGC 8 cut(s) 82, 106, 128, 337, 473, 550, 611, 694
PleI GAGTC 3 cut(s) 371, 517, 1093
PluTI GGCGCC 1 cut(s) 1023
PpsI GAGTC 3 cut(s) 371, 517, 1093
Psp6I CCWGG 5 cut(s) 348, 594, 612, 891, 1094
PspGI CCWGG 5 cut(s) 348, 594, 612, 891, 1094
PspLI CGTACG 1 cut(s) 636
PspN4I GGNNCC 1 cut(s) 1021
PspPI GGNCC 1 cut(s) 650
PstI CTGCAG 1 cut(s) 553
PsuI RGATCY 1 cut(s) 187
PvuII CAGCTG 1 cut(s) 692
RsaI GTAC 5 cut(s) 437, 638, 812, 944, 1123
RsaNI GTAC 5 cut(s) 436, 637, 811, 943, 1122
RseI CAYNNNNRTG 3 cut(s) 455, 1077, 1129
SacII CCGCGG 1 cut(s) 498
SaqAI TTAA 2 cut(s) 99, 827
SatI GCNGC 8 cut(s) 81, 105, 127, 336, 472, 549, 610, 693
Sau3AI GATC 5 cut(s) 187, 621, 710, 753, 918
Sau96I GGNCC 1 cut(s) 650
SchI GAGTC 3 cut(s) 371, 518, 1093
ScrFI CCNGG 5 cut(s) 350, 596, 614, 893, 1096
SfcI CTRYAG 2 cut(s) 549, 574
SfoI GGCGCC 1 cut(s) 1021
Sfr303I CCGCGG 1 cut(s) 498
SgrBI CCGCGG 1 cut(s) 498
SinI GGWCC 1 cut(s) 650
SmiMI CAYNNNNRTG 3 cut(s) 455, 1077, 1129
Sse9I AATT 1 cut(s) 389
SspDI GGCGCC 1 cut(s) 1019
SspMI CTAG 2 cut(s) 425, 654
StyD4I CCNGG 5 cut(s) 348, 594, 612, 891, 1094
StyI CCWWGG 2 cut(s) 339, 1023
TaaI ACNGT 6 cut(s) 94, 262, 650, 940, 955, 971
TaiI ACGT 3 cut(s) 285, 630, 638
TaqI TCGA 1 cut(s) 605
TasI AATT 1 cut(s) 389
TatI WGTACW 2 cut(s) 942, 1121
TauI GCSGC 4 cut(s) 83, 107, 129, 338
TfiI GAWTC 2 cut(s) 741, 768
Tru1I TTAA 2 cut(s) 99, 827
Tru9I TTAA 2 cut(s) 99, 827
TseI GCWGC 4 cut(s) 471, 548, 609, 692
TspGWI ACGGA 5 cut(s) 497, 579, 744, 789, 900
VpaK11BI GGWCC 1 cut(s) 650
XspI CTAG 2 cut(s) 425, 654
Zsp2I ATGCAT 1 cut(s) 847
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.