FvH4_1g01382

Glyco_18

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Forward (+)
704049 .. 705271
1223 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g01382.t1

Sequence Viewer

Length: 1134 bp
ATGTCTTCCAAATCAATAACTCTTCCATTTCTCTTCTCCCTCATCCTCTTATTCCTTAGCCACTACCTCAATGTCTCCGCCGCCCAAACCACCGTCGTTAAAGCCGCTTACTGGTTCCCGGACAGCGGCCAAGCAGCCTCCGCCATAAACTCCACCCTCTTCACTCACCTCTTCTGTGCTTTCGCAGATCTCAACCCCACCACTTACCAAGTCGCCATTTCCTCCGCAAACTCGCCTCAGTTCTCAACTTTCACTCAAACAGTCCAACAGAAAAACCCTAACGTCAAAACCCTCCTCTCCATCGGCGGAGGAAACTCCAGCCCCTCCACCTTCGCCGCCATGGCCAGCCAGGCCGCTCGTCGCAAAGCATTCATAGACTCATCAATCAAATTAGCGAGAAACTACTCCTTCTACGGCCTTGACCTAGATTGGGAATACCCTTCCTCCACCACCGAGATGACCAACTTTGGCAGCCTCCTCACGGAATGGCGCTCCGCGGTGGCCAACGAGTCAAGCACCTCCGGCAAGACGGCGTTGCTGTTGACCGCTGCAGTCTTCCGCAATGCGGATTACTACAGCATAAACTATCCGTTCCAGGCTGTTTCGAGCAGCCTGGACTGGATCAACGTCATGACGTACGATTACTACGGTCCTAGTTTCGCCGAAGGTAAAACCAACACTTACCCGCCAGCTGCATTATACAACGGCGGATCCACCACTCTCATCAACGGAGACGCCGGAATCGTGTCGTGGATCAACAACGCCGGAATCTCAACCAAGAAGATAGTCATTGGTCTTCCGTTTTACGGGTACGCTTGGAGATTGTTAAACCCTAATAACCATGGATTTTTCGCTCCGGCTAATGGCTCGGCTATCGGAGTTAACGGAGACCAGGGTTACAACCAGATTAGGGTTTTGATCAGCCGAGGGTTTCAGACGGTGTACAATGCGACGGTGGTTAGTAACTACTGTTACAATGGGACGACTTGGATTGGTTACGATGATACGCAGAGTATTGGCGCCAAGGTTTCGTATGCTAAAGGAAAGTCTCTTCTTGGTTACTTTGCTTGGCATACTGGTGCTGACACAACTACCTGGACTCTCTCTCAAACAGCTTTCAGTACATGGGGATGA

Protein Analysis

378

Amino Acids

40.95

Weight (kDa)

8.62

Isoelectric Point (pI)

28.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_18 PF00704 36 - 362 6.7e-72 Glycosyl hydrolases family 18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1019
AccBSI CCGCTC 1 cut(s) 356
AccII CGCG 1 cut(s) 497
AclWI GGATC 4 cut(s) 629, 705, 718, 761
AcoI YGGCCR 3 cut(s) 127, 342, 501
AcyI GRCGYC 2 cut(s) 735, 1020
AfaI GTAC 4 cut(s) 638, 812, 944, 1123
AfiI CCNNNNNNNGG 8 cut(s) 111, 125, 430, 481, 565, 806, 863, 910
AjnI CCWGG 5 cut(s) 348, 594, 612, 891, 1094
AluBI AGCT 2 cut(s) 692, 1115
AluI AGCT 2 cut(s) 692, 1115
Alw26I GTCTC 4 cut(s) 79, 726, 882, 1053
AlwI GGATC 4 cut(s) 629, 705, 718, 761
AoxI GGCC 5 cut(s) 127, 342, 351, 415, 501
ApeKI GCWGC 5 cut(s) 134, 471, 548, 609, 692
AspLEI GCGC 2 cut(s) 492, 1022
AspS9I GGNCC 1 cut(s) 650
AsuC2I CCSGG 1 cut(s) 119
AsuHPI GGTGA 1 cut(s) 158
AvaII GGWCC 1 cut(s) 650
BalI TGGCCA 2 cut(s) 344, 503
BamHI GGATCC 1 cut(s) 710
BanI GGYRCC 1 cut(s) 1019
BbsI GAAGAC 2 cut(s) 547, 788
BbvI GCAGC 5 cut(s) 146, 483, 535, 621, 679
BccI CCATC 1 cut(s) 308
BceAI ACGGC 3 cut(s) 430, 546, 721
BciT130I CCWGG 5 cut(s) 350, 596, 614, 893, 1096
BclI TGATCA 1 cut(s) 918
BcnI CCSGG 1 cut(s) 119
BcoDI GTCTC 4 cut(s) 79, 726, 882, 1053
BfaI CTAG 2 cut(s) 425, 654
BfmI CTRYAG 2 cut(s) 549, 574
BfoI RGCGCY 2 cut(s) 493, 1023
BglI GCCNNNNNGGC 2 cut(s) 341, 350
BglII AGATCT 1 cut(s) 187
Bme1390I CCNGG 6 cut(s) 119, 350, 596, 614, 893, 1096
Bme18I GGWCC 1 cut(s) 650
BmgT120I GGNCC 1 cut(s) 650
BmiI GGNNCC 3 cut(s) 116, 712, 1021
BmrFI CCNGG 6 cut(s) 119, 350, 596, 614, 893, 1096
BpiI GAAGAC 2 cut(s) 547, 788
BpmI CTGGAG 1 cut(s) 301
Bpu10I CCTNAGC 1 cut(s) 56
BpuMI CCSGG 1 cut(s) 119
BsaHI GRCGYC 2 cut(s) 735, 1020
BsaI GGTCTC 1 cut(s) 882
BsaJI CCNNGG 6 cut(s) 339, 495, 841, 892, 925, 1023
BsaXI ACNNNNNCTCC 2 cut(s) 428, 458
Bsc4I CCNNNNNNNGG 8 cut(s) 111, 125, 430, 481, 565, 806, 863, 910
Bse1I ACTGG 3 cut(s) 116, 623, 1081
Bse3DI GCAATG 1 cut(s) 568
BseBI CCWGG 5 cut(s) 350, 596, 614, 893, 1096
BseDI CCNNGG 6 cut(s) 339, 495, 841, 892, 925, 1023
BseGI GGATG 1 cut(s) 42
BseLI CCNNNNNNNGG 8 cut(s) 111, 125, 430, 481, 565, 806, 863, 910
BseMI GCAATG 1 cut(s) 568
BseMII CTCAG 1 cut(s) 251
BseNI ACTGG 3 cut(s) 116, 623, 1081
BseRI GAGGAG 2 cut(s) 284, 467
BseXI GCAGC 5 cut(s) 146, 483, 535, 621, 679
Bsh1236I CGCG 1 cut(s) 497
BshFI GGCC 5 cut(s) 129, 344, 353, 417, 503
BshNI GGYRCC 1 cut(s) 1019
BsiSI CCGG 5 cut(s) 119, 522, 738, 765, 857
BsiWI CGTACG 1 cut(s) 636
BslFI GGGAC 1 cut(s) 994
BslI CCNNNNNNNGG 8 cut(s) 111, 125, 430, 481, 565, 806, 863, 910
BsmAI GTCTC 4 cut(s) 79, 726, 882, 1053
BsmBI CGTCTC 1 cut(s) 726
BsmFI GGGAC 1 cut(s) 994
BsmI GAATGC 1 cut(s) 368
BsnI GGCC 5 cut(s) 129, 344, 353, 417, 503
Bso31I GGTCTC 1 cut(s) 882
Bsp1407I TGTACA 1 cut(s) 942
Bsp143I GATC 5 cut(s) 187, 621, 710, 753, 918
Bsp19I CCATGG 2 cut(s) 339, 841
BspANI GGCC 5 cut(s) 129, 344, 353, 417, 503
BspCNI CTCAG 1 cut(s) 250
BspFNI CGCG 1 cut(s) 497
BspHI TCATGA 1 cut(s) 630
BspLI GGNNCC 3 cut(s) 116, 712, 1021
BspMAI CTGCAG 1 cut(s) 553
BspPI GGATC 4 cut(s) 629, 705, 718, 761
BspT107I GGYRCC 1 cut(s) 1019
BspTNI GGTCTC 1 cut(s) 882
BsrBI CCGCTC 1 cut(s) 356
BsrDI GCAATG 1 cut(s) 568
BsrGI TGTACA 1 cut(s) 942
BsrI ACTGG 3 cut(s) 116, 623, 1081
BssECI CCNNGG 6 cut(s) 339, 495, 841, 892, 925, 1023
BssMI GATC 5 cut(s) 187, 621, 710, 753, 918
BssNI GRCGYC 2 cut(s) 735, 1020
BssT1I CCWWGG 3 cut(s) 339, 841, 1023
Bst2UI CCWGG 5 cut(s) 350, 596, 614, 893, 1096
Bst4CI ACNGT 6 cut(s) 94, 262, 650, 940, 955, 971
Bst6I CTCTTC 5 cut(s) 27, 38, 164, 176, 1056
BstACI GRCGYC 2 cut(s) 735, 1020
BstAUI TGTACA 1 cut(s) 942
BstC8I GCNNGC 2 cut(s) 346, 690
BstDEI CTNAG 2 cut(s) 56, 237
BstDSI CCRYGG 3 cut(s) 339, 495, 841
BstF5I GGATG 1 cut(s) 42
BstFNI CGCG 1 cut(s) 497
BstH2I RGCGCY 2 cut(s) 493, 1023
BstHHI GCGC 2 cut(s) 492, 1022
BstKTI GATC 5 cut(s) 190, 624, 713, 756, 921
BstMAI GTCTC 4 cut(s) 79, 726, 882, 1053
BstMBI GATC 5 cut(s) 187, 621, 710, 753, 918
BstMWI GCNNNNNNNGC 4 cut(s) 140, 341, 350, 522
BstNI CCWGG 5 cut(s) 350, 596, 614, 893, 1096
BstSCI CCNGG 6 cut(s) 117, 348, 594, 612, 891, 1094
BstSFI CTRYAG 2 cut(s) 549, 574
BstUI CGCG 1 cut(s) 497
BstV1I GCAGC 5 cut(s) 146, 483, 535, 621, 679
BstV2I GAAGAC 2 cut(s) 547, 788
BstX2I RGATCY 2 cut(s) 187, 710
BstYI RGATCY 2 cut(s) 187, 710
BsuRI GGCC 5 cut(s) 129, 344, 353, 417, 503
BtgI CCRYGG 3 cut(s) 339, 495, 841
BtsCI GGATG 1 cut(s) 42
Cac8I GCNNGC 2 cut(s) 346, 690
CciI TCATGA 1 cut(s) 630
CfoI GCGC 2 cut(s) 492, 1022
Cfr13I GGNCC 1 cut(s) 650
Cfr42I CCGCGG 1 cut(s) 498
CseI GACGC 1 cut(s) 743
Csp6I GTAC 4 cut(s) 637, 811, 943, 1122
CviAII CATG 4 cut(s) 340, 631, 842, 1125
CviQI GTAC 4 cut(s) 637, 811, 943, 1122
DdeI CTNAG 2 cut(s) 56, 237
DinI GGCGCC 1 cut(s) 1021
DpnI GATC 5 cut(s) 189, 623, 712, 755, 920
DpnII GATC 5 cut(s) 187, 621, 710, 753, 918
EaeI YGGCCR 3 cut(s) 127, 342, 501
Eam1104I CTCTTC 5 cut(s) 27, 38, 164, 176, 1056
EarI CTCTTC 5 cut(s) 27, 38, 164, 176, 1056
EciI GGCGGA 4 cut(s) 67, 130, 321, 723
Eco130I CCWWGG 3 cut(s) 339, 841, 1023
Eco31I GGTCTC 1 cut(s) 882
Eco47I GGWCC 1 cut(s) 650
EcoRII CCWGG 5 cut(s) 348, 594, 612, 891, 1094
EcoT14I CCWWGG 3 cut(s) 339, 841, 1023
EgeI GGCGCC 1 cut(s) 1021
EheI GGCGCC 1 cut(s) 1021
ErhI CCWWGG 3 cut(s) 339, 841, 1023
Esp3I CGTCTC 1 cut(s) 726
FaeI CATG 4 cut(s) 343, 634, 845, 1128
FaqI GGGAC 1 cut(s) 994
FatI CATG 4 cut(s) 339, 630, 841, 1124
FauI CCCGC 1 cut(s) 693
FbaI TGATCA 1 cut(s) 918
FokI GGATG 1 cut(s) 29
FspBI CTAG 2 cut(s) 425, 654
GlaI GCGC 2 cut(s) 491, 1021
GsuI CTGGAG 1 cut(s) 301
HaeII RGCGCY 2 cut(s) 493, 1023
HaeIII GGCC 5 cut(s) 129, 344, 353, 417, 503
HapII CCGG 5 cut(s) 119, 522, 738, 765, 857
HgaI GACGC 1 cut(s) 743
HhaI GCGC 2 cut(s) 492, 1022
Hin1I GRCGYC 2 cut(s) 735, 1020
Hin1II CATG 4 cut(s) 343, 634, 845, 1128
Hin6I GCGC 2 cut(s) 490, 1020
HinP1I GCGC 2 cut(s) 490, 1020
HincII GTYRAC 2 cut(s) 543, 883
HindII GTYRAC 2 cut(s) 543, 883
HinfI GANTC 5 cut(s) 377, 509, 741, 768, 1099
HpaI GTTAAC 1 cut(s) 883
HpaII CCGG 5 cut(s) 119, 522, 738, 765, 857
HphI GGTGA 1 cut(s) 158
Hpy166II GTNNAC 3 cut(s) 543, 883, 943
Hpy188I TCNGA 2 cut(s) 878, 936
Hpy188III TCNNGA 1 cut(s) 631
Hpy8I GTNNAC 3 cut(s) 543, 883, 943
Hpy99I CGWCG 3 cut(s) 98, 363, 955
HpyAV CCTTC 4 cut(s) 340, 418, 450, 659
HpyCH4III ACNGT 6 cut(s) 94, 262, 650, 940, 955, 971
HpyCH4IV ACGT 3 cut(s) 282, 627, 635
HpyCH4V TGCA 2 cut(s) 551, 695
HpyF10VI GCNNNNNNNGC 4 cut(s) 140, 341, 350, 522
HpyF3I CTNAG 2 cut(s) 56, 237
HpySE526I ACGT 3 cut(s) 282, 627, 635
Hsp92I GRCGYC 2 cut(s) 735, 1020
Hsp92II CATG 4 cut(s) 343, 634, 845, 1128
HspAI GCGC 2 cut(s) 490, 1020
KasI GGCGCC 1 cut(s) 1019
Ksp22I TGATCA 1 cut(s) 918
KspAI GTTAAC 1 cut(s) 883
KspI CCGCGG 1 cut(s) 498
Kzo9I GATC 5 cut(s) 187, 621, 710, 753, 918
LmnI GCTCC 2 cut(s) 497, 859
Lsp1109I GCAGC 5 cut(s) 146, 483, 535, 621, 679
MaeI CTAG 2 cut(s) 425, 654
MaeII ACGT 3 cut(s) 282, 627, 635
MaeIII GTNAC 5 cut(s) 896, 962, 971, 995, 1058
MalI GATC 5 cut(s) 189, 623, 712, 755, 920
MbiI CCGCTC 1 cut(s) 356
MboI GATC 5 cut(s) 187, 621, 710, 753, 918
MboII GAAGA 8 cut(s) 14, 25, 151, 163, 547, 788, 793, 1043
MflI RGATCY 2 cut(s) 187, 710
MlsI TGGCCA 2 cut(s) 344, 503
MluCI AATT 1 cut(s) 389
MluNI TGGCCA 2 cut(s) 344, 503
Mly113I GGCGCC 1 cut(s) 1020
MlyI GAGTC 3 cut(s) 371, 518, 1093
MmeI TCCRAC 1 cut(s) 289
Mox20I TGGCCA 2 cut(s) 344, 503
MscI TGGCCA 2 cut(s) 344, 503
MseI TTAA 3 cut(s) 99, 827, 882
MslI CAYNNNNRTG 3 cut(s) 455, 1077, 1129
Msp20I TGGCCA 2 cut(s) 344, 503
MspA1I CMGCKG 4 cut(s) 126, 497, 548, 692
MspI CCGG 5 cut(s) 119, 522, 738, 765, 857
MspR9I CCNGG 6 cut(s) 119, 350, 596, 614, 893, 1096
Mva1269I GAATGC 1 cut(s) 368
MvaI CCWGG 5 cut(s) 350, 596, 614, 893, 1096
MvnI CGCG 1 cut(s) 497
MwoI GCNNNNNNNGC 4 cut(s) 140, 341, 350, 522
NarI GGCGCC 1 cut(s) 1020
NciI CCSGG 1 cut(s) 119
NcoI CCATGG 2 cut(s) 339, 841
NdeII GATC 5 cut(s) 187, 621, 710, 753, 918
NlaIII CATG 4 cut(s) 343, 634, 845, 1128
NlaIV GGNNCC 3 cut(s) 116, 712, 1021
NmeAIII GCCGAG 2 cut(s) 848, 950
PagI TCATGA 1 cut(s) 630
PcsI WCGNNNNNNNCGW 1 cut(s) 741
PctI GAATGC 1 cut(s) 368
PfeI GAWTC 2 cut(s) 741, 768
Pfl23II CGTACG 1 cut(s) 636
PfoI TCCNGGA 1 cut(s) 117
PleI GAGTC 3 cut(s) 371, 517, 1093
PluTI GGCGCC 1 cut(s) 1023
PpsI GAGTC 3 cut(s) 371, 517, 1093
Psp6I CCWGG 5 cut(s) 348, 594, 612, 891, 1094
PspGI CCWGG 5 cut(s) 348, 594, 612, 891, 1094
PspLI CGTACG 1 cut(s) 636
PspN4I GGNNCC 3 cut(s) 116, 712, 1021
PspPI GGNCC 1 cut(s) 650
PstI CTGCAG 1 cut(s) 553
PsuI RGATCY 2 cut(s) 187, 710
PvuII CAGCTG 1 cut(s) 692
RsaI GTAC 4 cut(s) 638, 812, 944, 1123
RsaNI GTAC 4 cut(s) 637, 811, 943, 1122
RseI CAYNNNNRTG 3 cut(s) 455, 1077, 1129
SacII CCGCGG 1 cut(s) 498
SaqAI TTAA 3 cut(s) 99, 827, 882
Sau3AI GATC 5 cut(s) 187, 621, 710, 753, 918
Sau96I GGNCC 1 cut(s) 650
SchI GAGTC 3 cut(s) 371, 518, 1093
ScrFI CCNGG 6 cut(s) 119, 350, 596, 614, 893, 1096
SfcI CTRYAG 2 cut(s) 549, 574
SfiI GGCCNNNNNGGCC 1 cut(s) 350
SfoI GGCGCC 1 cut(s) 1021
Sfr303I CCGCGG 1 cut(s) 498
SgrBI CCGCGG 1 cut(s) 498
SinI GGWCC 1 cut(s) 650
SmiMI CAYNNNNRTG 3 cut(s) 455, 1077, 1129
Sse9I AATT 1 cut(s) 389
SspDI GGCGCC 1 cut(s) 1019
SspMI CTAG 2 cut(s) 425, 654
StyD4I CCNGG 6 cut(s) 117, 348, 594, 612, 891, 1094
StyI CCWWGG 3 cut(s) 339, 841, 1023
TaaI ACNGT 6 cut(s) 94, 262, 650, 940, 955, 971
TaiI ACGT 3 cut(s) 285, 630, 638
TaqI TCGA 1 cut(s) 605
TasI AATT 1 cut(s) 389
TatI WGTACW 2 cut(s) 942, 1121
TauI GCSGC 5 cut(s) 83, 107, 129, 338, 356
TfiI GAWTC 2 cut(s) 741, 768
Tru1I TTAA 3 cut(s) 99, 827, 882
Tru9I TTAA 3 cut(s) 99, 827, 882
TseI GCWGC 5 cut(s) 134, 471, 548, 609, 692
TspDTI ATGAA 1 cut(s) 361
TspGWI ACGGA 5 cut(s) 497, 579, 744, 789, 900
VpaK11BI GGWCC 1 cut(s) 650
XspI CTAG 2 cut(s) 425, 654
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.